檢索結果 - Nathan C. Sheffield

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  1. 1
    LOLA: enrichment analysis for genomic region sets and regulatory elements in R and Bioconductor

    LOLA: enrichment analysis for genomic region sets and regulatory elements in R and Bioconductor 由 Nathan C. Sheffield, Christoph Bock

    出版 2015
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  2. 2
    Multi-Omics of Single Cells: Strategies and Applications

    Multi-Omics of Single Cells: Strategies and Applications 由 Christoph Bock, Matthias Farlik, Nathan C. Sheffield

    出版 2016
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  3. 3
    ChIPmentation: fast, robust, low-input ChIP-seq for histones and transcription factors

    ChIPmentation: fast, robust, low-input ChIP-seq for histones and transcription factors 由 Christian Schmidl, André F. Rendeiro, Nathan C. Sheffield, Christoph Bock

    出版 2015
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  4. 4
    Opportunities and challenges in sharing and reusing genomic interval data

    Opportunities and challenges in sharing and reusing genomic interval data 由 Bingjie Xue, Oleksandr Khoroshevskyi, R. Ariel Gómez, Nathan C. Sheffield

    出版 2023
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  5. 5
    A Comparative Analysis of Mitochondrial Genomes in Coleoptera (Arthropoda: Insecta) and Genome Descriptions of Six New Beetles

    A Comparative Analysis of Mitochondrial Genomes in Coleoptera (Arthropoda: Insecta) and Genome Descriptions of Six New Beetles 由 Nathan C. Sheffield, Hojun Song, Stephen L. Cameron, Michael F. Whiting

    出版 2008
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  6. 6
    Nonstationary Evolution and Compositional Heterogeneity in Beetle Mitochondrial Phylogenomics

    Nonstationary Evolution and Compositional Heterogeneity in Beetle Mitochondrial Phylogenomics 由 Nathan C. Sheffield, Hojun Song, Stephen L. Cameron, Michael F. Whiting

    出版 2009
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  7. 7
    GEOfetch: a command-line tool for downloading data and standardized metadata from GEO and SRA

    GEOfetch: a command-line tool for downloading data and standardized metadata from GEO and SRA 由 Oleksandr Khoroshevskyi, Nathan J. LeRoy, Vincent Reuter, Nathan C. Sheffield

    出版 2023
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  8. 8
    Predicting cell-type–specific gene expression from regions of open chromatin

    Predicting cell-type–specific gene expression from regions of open chromatin 由 Anirudh Natarajan, Galip Gürkan Yardımcı, Nathan C. Sheffield, Gregory E. Crawford, Uwe Ohler

    出版 2012
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  9. 9
    Refgenie: a reference genome resource manager

    Refgenie: a reference genome resource manager 由 Michał Stolarczyk, Vincent Reuter, Jason P. Smith, Neal E. Magee, Nathan C. Sheffield

    出版 2020
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  10. 10
    Mitochondrial genomics in Orthoptera using MOSAS

    Mitochondrial genomics in Orthoptera using MOSAS 由 Nathan C. Sheffield, Kevin D. Hiatt, Mark C. Valentine, Hojun Song, Michael F. Whiting

    出版 2010
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  11. 11
    Single-Cell DNA Methylome Sequencing and Bioinformatic Inference of Epigenomic Cell-State Dynamics

    Single-Cell DNA Methylome Sequencing and Bioinformatic Inference of Epigenomic Cell-State Dynamics 由 Matthias Farlik, Nathan C. Sheffield, Angelo Nuzzo, Paul Datlinger, Andreas Schönegger, Johanna Klughammer, Christoph Bock

    出版 2015
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  12. 12
    BART: a transcription factor prediction tool with query gene sets or epigenomic profiles

    BART: a transcription factor prediction tool with query gene sets or epigenomic profiles 由 Zhenjia Wang, Mete Civelek, Clint L. Miller, Nathan C. Sheffield, Michael J. Guertin, Chongzhi Zang

    出版 2018
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  13. 13
    PEPATAC: an optimized pipeline for ATAC-seq data analysis with serial alignments

    PEPATAC: an optimized pipeline for ATAC-seq data analysis with serial alignments 由 Jason P. Smith, M. Ryan Corces, Jin Xu, Vincent Reuter, Howard Y. Chang, Nathan C. Sheffield

    出版 2021
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  14. 14
    Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions

    Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions 由 Nathan C. Sheffield, Robert E. Thurman, Lingyun Song, Alexias Safi, J Stamatoyannopoulos, Boris Lenhard, Gregory E. Crawford, Terrence S. Furey

    出版 2013
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  15. 15
    Epigenome Mapping Reveals Distinct Modes of Gene Regulation and Widespread Enhancer Reprogramming by the Oncogenic Fusion Protein EWS-FLI1

    Epigenome Mapping Reveals Distinct Modes of Gene Regulation and Widespread Enhancer Reprogramming by the Oncogenic Fusion Protein EWS-FLI1 由 Eleni M. Tomazou, Nathan C. Sheffield, Christian Schmidl, Michael Schuster, Andreas Schönegger, Paul Datlinger, Stefan Kubicek, Christoph Bock, Heinrich Kovar

    出版 2015
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  16. 16
    Single-cell epigenomic variability reveals functional cancer heterogeneity

    Single-cell epigenomic variability reveals functional cancer heterogeneity 由 Ulrike Litzenburger, Jason D. Buenrostro, Beijing Wu, Ying Shen, Nathan C. Sheffield, Arwa S. Kathiria, William J. Greenleaf, Howard Y. Chang

    出版 2017
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  17. 17
    Chromatin accessibility reveals insights into androgen receptor activation and transcriptional specificity

    Chromatin accessibility reveals insights into androgen receptor activation and transcriptional specificity 由 Alok K. Tewari, Galip Gürkan Yardımcı, Yoichiro Shibata, Nathan C. Sheffield, Lingyun Song, Barry S. Taylor, Stoyan Georgiev, Gerhard A. Coetzee, Uwe Ohler, Terrence S. Furey, Gregory E. Crawford, Phillip G. Febbo

    出版 2012
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  18. 18
    Single-cell transcriptome and accessible chromatin dynamics during endocrine pancreas development

    Single-cell transcriptome and accessible chromatin dynamics during endocrine pancreas development 由 Eliza Duvall, Cecil M. Benitez, Krissie Tellez, Martin Enge, Philip T. Pauerstein, Lingyu Li, Songjoon Baek, Stephen R. Quake, Jason P. Smith, Nathan C. Sheffield, Seung K. Kim, H. Efsun Arda

    出版 2022
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  19. 19
    Extensive Evolutionary Changes in Regulatory Element Activity during Human Origins Are Associated with Altered Gene Expression and Positive Selection

    Extensive Evolutionary Changes in Regulatory Element Activity during Human Origins Are Associated with Altered Gene Expression and Positive Selection 由 Yoichiro Shibata, Nathan C. Sheffield, Olivier Fédrigo, Courtney C. Babbitt, Matthew Wortham, Alok K. Tewari, Darin London, Lingyun Song, Bum-Kyu Lee, Vishwanath R. Iyer, Stephen C. J. Parker, Elliott H. Margulies, Gregory A. Wray, Terrence S. Furey, Gregory E. Crawford

    出版 2012
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  20. 20
    Integrative Single-Cell Meta-Analysis Reveals Disease-Relevant Vascular Cell States and Markers in Human Atherosclerosis

    Integrative Single-Cell Meta-Analysis Reveals Disease-Relevant Vascular Cell States and Markers in Human Atherosclerosis 由 José Verdezoto Mosquera, Gaëlle Auguste, Doris C. Wong, Adam W. Turner, Chani J. Hodonsky, Christian Lino Cardenas, Konstantinos Theofilatos, Maxime M. Bos, Maryam Kavousi, Patricia A. Peyser, Manuel Mayr, Jason Kovacic, Johan Björkegren, Rajeev Malhotra, Sander W. van der Laan, Chongzhi Zang, Nathan C. Sheffield, Clint L. Miller

    出版 2023
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