Søgeresultater - Nathan Boley

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  1. 1
    Subsampling methods for genomic inference

    Subsampling methods for genomic inference af Peter J. Bickel, Nathan Boley, James B. Brown, Haiyan Huang, Nancy Zhang

    Udgivet 2010
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  2. 2
    GenomeDISCO: a concordance score for chromosome conformation capture experiments using random walks on contact map graphs

    GenomeDISCO: a concordance score for chromosome conformation capture experiments using random walks on contact map graphs af Oana Ursu, Nathan Boley, Maryna Taranova, Y. X. Rachel Wang, Galip Gürkan Yardımcı, William Stafford Noble, Anshul Kundaje

    Udgivet 2018
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  3. 3
    Genome-guided transcript assembly by integrative analysis of RNA sequence data

    Genome-guided transcript assembly by integrative analysis of RNA sequence data af Nathan Boley, Marcus H. Stoiber, Benjamin W. Booth, Kenneth H. Wan, Roger A. Hoskins, Peter J. Bickel, S Celniker, James Brown

    Udgivet 2014
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  4. 4
    Selective time-dependent changes in activity and cell-specific gene expression in human postmortem brain

    Selective time-dependent changes in activity and cell-specific gene expression in human postmortem brain af Fabien Dachet, James Brown, Tibor Valyi‐Nagy, Kunwar Digvijay Narayan, Anna Serafini, Nathan Boley, T Gingeras, S Celniker, Gayatry Mohapatra, Jeffrey A. Loeb

    Udgivet 2021
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  5. 5
    Genome-wide analysis of promoter architecture in <i>Drosophila melanogaster</i>

    Genome-wide analysis of promoter architecture in <i>Drosophila melanogaster</i> af Roger A. Hoskins, Jane M. Landolin, James Brown, Jeremy E. Sandler, Hazuki Takahashi, Timo Lassmann, Charles Yu, Benjamin W. Booth, Dayu Zhang, Kenneth H. Wan, Li Yang, Nathan Boley, Justen Andrews, Thomas C. Kaufman, Brenton R. Graveley, Peter J. Bickel, Piero Carninci, Joseph W. Carlson, S Celniker

    Udgivet 2010
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  6. 6
    Machine learning enables detection of early-stage colorectal cancer by whole-genome sequencing of plasma cell-free DNA

    Machine learning enables detection of early-stage colorectal cancer by whole-genome sequencing of plasma cell-free DNA af Nathan Wan, David S. Weinberg, Tzu‐Yu Liu, Katherine E. Niehaus, Eric A. Ariazi, Daniel Delubac, Ajay Kannan, Brandon White, Mitch Bailey, Marvin Bertin, Nathan Boley, Derek Bowen, James M. Cregg, Adam Drake, Riley Ennis, Signe Fransen, Erik Gafni, Loren Hansen, Yaping Liu, Gabriel Otte, Jennifer Pecson, Brandon Rice, Gabriel E. Sanderson, Aarushi Sharma, John St. John, Catherina Tang, Abraham Tzou, Leilani Young, Girish Putcha, Imran S. Haque

    Udgivet 2019
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  7. 7
    Diversity and dynamics of the Drosophila transcriptome

    Diversity and dynamics of the Drosophila transcriptome af James Brown, Nathan Boley, Robert C. Eisman, Gemma E. May, Marcus H. Stoiber, Michael O. Duff, Ben W. Booth, Jiayu Wen, Soo Hyung Park, Ana Maria Suzuki, Kenneth H. Wan, Charles Yu, Dayu Zhang, Joseph W. Carlson, Lucy Cherbas, Brian D. Eads, David F. Miller, Keithanne Mockaitis, Johnny Roberts, Carrie Davis, Erwin Frise, Ann S. Hammonds, Sara Olson, Sol Shenker, David Sturgill, Anastasia Samsonova, Richard Weiszmann, Garret Robinson, Juan Hernandez, Justen Andrews, Peter J. Bickel, Piero Carninci, Peter Cherbas, T Gingeras, Roger A. Hoskins, Thomas C. Kaufman, Eric C. Lai, Brian Oliver, Norbert Perrimon, Brenton R. Graveley, S Celniker

    Udgivet 2014
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  8. 8
    The developmental transcriptome of Drosophila melanogaster

    The developmental transcriptome of Drosophila melanogaster af Brenton R. Graveley, Angela N. Brooks, Joseph W. Carlson, Michael O. Duff, Jane M. Landolin, Li Yang, Carlo G. Artieri, Marijke J. van Baren, Nathan Boley, Benjamin W. Booth, James B. Brown, Lucy Cherbas, Carrie Davis, Alexander Dobin, Renhua Li, Wei Lin, John H. Malone, Nicolas R. Mattiuzzo, David M. Miller, David Sturgill, Brian B. Tuch, Chris Zaleski, Dayu Zhang, Marco Blanchette, Sandrine Dudoit, Brian D. Eads, Richard E. Green, Ann S. Hammonds, Lichun Jiang, Phil Kapranov, Laura Langton, Norbert Perrimon, Jeremy E. Sandler, Kenneth H. Wan, Aarron Willingham, Yu Zhang, Yi Zou, Justen Andrews, Peter J. Bickel, Steven E. Brenner, Michael R. Brent, Peter Cherbas, T Gingeras, Roger A. Hoskins, Thomas C. Kaufman, Brian Oliver, S Celniker

    Udgivet 2010
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  9. 9
    The ENCODE Uniform Analysis Pipelines

    The ENCODE Uniform Analysis Pipelines af Benjamin C. Hitz, Jin-Wook Lee, Otto Jolanki, Meenakshi S. Kagda, Keenan Graham, Paul Sud, Idan Gabdank, J. Seth Strattan, Cricket A. Sloan, Timothy R. Dreszer, Laurence D. Rowe, Nikhil R. Podduturi, Venkat S. Malladi, Esther T. Chan, Jean M. Davidson, Marcus Ho, Stuart R. Miyasato, Matt Simison, Forrest Y. Tanaka, Yunhai Luo, Ian Whaling, Eurie L. Hong, Brian T. Lee, Richard Sandstrom, Eric Rynes, Jemma Nelson, Andrew Nishida, Alyssa Ingersoll, Michael Buckley, Mark Frerker, Daniel Sunwook Kim, Nathan Boley, Diane Trout, Alexander Dobin, Sorena Rahmanian, Dana Wyman, Gabriela Balderrama-Gutierrez, Fairlie Reese, Neva C. Durand, Olga Dudchenko, David Weisz, Suhas S.P. Rao, Alyssa Blackburn, Dimos Gkountaroulis, Mahdi Sadr, Moshe Olshansky, Yossi Eliaz, Dat Nguyen, Ivan D. Bochkov, Muhammad S. Shamim, Ragini Mahajan, Erez Lieberman Aiden, T Gingeras, Simon Heath, Martin Hirst, W. James Kent, Anshul Kundaje, A Mortazavi, B Wold, J. Michael Cherry

    Udgivet 2023
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  10. 10
    The ENCODE Uniform Analysis Pipelines

    The ENCODE Uniform Analysis Pipelines af Benjamin C. Hitz, Jin-Wook Lee, Otto Jolanki, Meenakshi S. Kagda, Keenan Graham, Paul Sud, Idan Gabdank, J. Seth Strattan, Cricket A. Sloan, Timothy R. Dreszer, Laurence D. Rowe, Nikhil R. Podduturi, Venkat S. Malladi, Esther T. Chan, Jean M. Davidson, Marcus Ho, Stuart R. Miyasato, Matt Simison, Forrest Y. Tanaka, Yunhai Luo, Ian Wahling, Khine Lin, Jennifer Jou, Eurie L. Hong, Brian T. Lee, Richard Sandstrom, Eric Rynes, Jemma Nelson, Andrew Nishida, Alyssa Ingersoll, Michael Buckley, Mark Frerker, Daniel S. Kim, Nathan Boley, Diane Trout, Alexander Dobin, Sorena Rahmanian, Dana Wyman, Gabriela Balderrama-Gutierrez, Fairlie Reese, Neva C. Durand, Olga Dudchenko, David Weisz, Suhas S.P. Rao, Alyssa Blackburn, Dimos Gkountaroulis, Mahdi Sadr, Moshe Olshansky, Yossi Eliaz, Dat Nguyen, Ivan D. Bochkov, Muhammad S. Shamim, Ragini Mahajan, Erez Lieberman Aiden, T Gingeras, Simon Heath, Martin Hirst, W. James Kent, Anshul Kundaje, A Mortazavi, B Wold, J. Michael Cherry

    Udgivet 2023
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  11. 11
    Comparative validation of the <i>D. melanogaster</i> modENCODE transcriptome annotation

    Comparative validation of the <i>D. melanogaster</i> modENCODE transcriptome annotation af Zhen‐Xia Chen, David Sturgill, Jiaxin Qu, Huaiyang Jiang, Soo Hyung Park, Nathan Boley, Ana Maria Suzuki, Anthony Fletcher, David C. Plachetzki, Peter Fitzgerald, Carlo G. Artieri, Joel Atallah, Olga Barmina, James Brown, Kerstin P. Blankenburg, Emily Clough, Abhijit Dasgupta, Sai Gubbala, Yi Han, Joy C. Jayaseelan, Divya Kalra, Yoo-Ah Kim, Christie Kovar, Sandra L. Lee, Mingmei Li, James D. Malley, John H. Malone, Tittu Mathew, Nicolas R. Mattiuzzo, Mala Munidasa, Donna M. Muzny, Fiona Ongeri, Lora Perales, Teresa M. Przytycka, Ling-Ling Pu, Garrett Robinson, Rebecca Thornton, Nehad Saada, Steven E. Scherer, Harold E. Smith, Charles Vinson, Crystal B. Warner, Kim C. Worley, Yuan-Qing Wu, Xiaoyan Zou, Peter Cherbas, Manolis Kellis, Michael B. Eisen, Fabio Piano, Karin Kionte, David Fitch, Paul W. Sternberg, Asher D. Cutter, Michael O. Duff, Roger A. Hoskins, Brenton R. Graveley, Richard A. Gibbs, Peter J. Bickel, Artyom Kopp, Piero Carninci, S Celniker, Brian Oliver, Stephen Richards

    Udgivet 2014
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  12. 12
    Perspectives on ENCODE

    Perspectives on ENCODE af Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal, Bronwen Aken, Rizi Ai, Jennifer A. Akiyama, Omar Al Jammal, Henry Amrhein, Stacie M. Anderson, Gregory R. Andrews, Igor Antoshechkin, Kristin Ardlie, Joel Armstrong, Matthew Astley, Budhaditya Banerjee, Amira Barkal, If H. A. Barnes, Iros Barozzi, Daniel Barrell, Gemma Barson, Daniel J. Bates, Ulugbek K. Baymuradov, Cassandra Bazile, M Beer, Samantha Beik, M. A. Bender, Ruth Bennett, Louis Philip Benoit Bouvrette, B Bernstein, Andrew Berry, Anand Bhaskar, Alexandra Bignell, Steven M. Blue, David M. Bodine, Carles Boix, Nathan Boley, Tyler Borrman, Beatrice Borsari, Alan P. Boyle, Laurel A. Brandsmeier, Alessandra Breschi, Emery H. Bresnick, Jason A. Brooks, Michael Buckley, Christopher B. Burge, Rachel Byron, Eileen Cahill, Lingling Cai, Lulu Cao, Mark Carty, Rosa Castanon, Andrés Castillo, Hassan Chaı̈b, Esther T. Chan, Daniel R. Chee, Sora Chee, Hao Chen, Huaming Chen, Jiayu Chen, Songjie Chen, J. Michael Cherry, Surya B. Chhetri, Jyoti S. Choudhary, Jacqueline Chrast, Dongjun Chung, Declan Clarke, Neal Cody, Candice J. Coppola, Julie Coursen, Anthony D’Ippolito, Stephen Dalton, Cassidy Danyko, Claire Davidson, José Dávila-Velderrain, Carrie Davis, Job Dekker, Alden Deran, Gilberto DeSalvo, Gloria Despacio-Reyes, Colin N. Dewey, Diane E. Dickel, Morgan Diegel, Mark Diekhans, Vishnu Dileep, Bo Ding, Sarah Djebali, Alexander Dobin, Daniel Domı́nguez, Sarah Donaldson, Jörg Drenkow, Timothy R. Dreszer, Yotam Drier, Michael O. Duff, Douglass Dunn, Catharine Eastman, Joseph R. Ecker, Matthew D. Edwards, Nicole El-Ali

    Udgivet 2020
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  13. 13
    Expanded encyclopaedias of DNA elements in the human and mouse genomes

    Expanded encyclopaedias of DNA elements in the human and mouse genomes af Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal, Rizi Ai, Bronwen Aken, Jennifer A. Akiyama, Omar Al Jammal, Henry Amrhein, Stacie M. Anderson, Gregory R. Andrews, Igor Antoshechkin, Kristin Ardlie, Joel Armstrong, Matthew Astley, Budhaditya Banerjee, Amira Barkal, If H. A. Barnes, Iros Barozzi, Daniel Barrell, Gemma Barson, Daniel J. Bates, Ulugbek K. Baymuradov, Cassandra Bazile, M Beer, Samantha Beik, M. A. Bender, Ruth Bennett, Louis Philip Benoit Bouvrette, B Bernstein, Andrew Berry, Anand Bhaskar, Alexandra Bignell, Steven M. Blue, David M. Bodine, Carles Boix, Nathan Boley, Tyler Borrman, Beatrice Borsari, Alan P. Boyle, Laurel A. Brandsmeier, Alessandra Breschi, Emery H. Bresnick, Jason A. Brooks, Michael Buckley, Christopher B. Burge, Rachel Byron, Eileen Cahill, Lingling Cai, Lulu Cao, Mark Carty, Rosa G. Castanon, Andres Castillo, Hassan Chaı̈b, Esther T. Chan, Daniel R. Chee, Sora Chee, Hao Chen, Huaming Chen, Jiayu Chen, Songjie Chen, J. Michael Cherry, Surya B. Chhetri, Jyoti S. Choudhary, Jacqueline Chrast, Dongjun Chung, Declan Clarke, Neal Cody, Candice J. Coppola, Julie Coursen, Anthony D’Ippolito, Stephen Dalton, Cassidy Danyko, Claire Davidson, José Dávila-Velderrain, Carrie Davis, Job Dekker, Alden Deran, Gilberto DeSalvo, Gloria Despacio-Reyes, Colin N. Dewey, Diane E. Dickel, Morgan Diegel, Mark Diekhans, Vishnu Dileep, Bo Ding, Sarah Djebali, Alexander Dobin, Daniel Domı́nguez, Sarah Donaldson, Jörg Drenkow, Timothy R. Dreszer, Yotam Drier, Michael O. Duff, Douglass Dunn, Catharine Eastman, Joseph R. Ecker, Matthew D. Edwards, Nicole El-Ali

    Udgivet 2020
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