Rezultaty - Mohammed Alser

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  1. 1
    Taming large-scale genomic analyses via sparsified genomics

    Taming large-scale genomic analyses via sparsified genomics od Mohammed Alser, Julien Eudine, Onur Mutlu

    Wydane 2025
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  2. 2
    Shouji: a fast and efficient pre-alignment filter for sequence alignment

    Shouji: a fast and efficient pre-alignment filter for sequence alignment od Mohammed Alser, Hasan Hassan, Akash Kumar, Onur Mutlu, Can Alkan

    Wydane 2019
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  3. 3
    Metalign: efficient alignment-based metagenomic profiling via containment min hash

    Metalign: efficient alignment-based metagenomic profiling via containment min hash od Nathan LaPierre, Mohammed Alser, Eleazar Eskin, David Koslicki, Serghei Mangul

    Wydane 2020
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  4. 4
    GateKeeper: a new hardware architecture for accelerating pre-alignment in DNA short read mapping

    GateKeeper: a new hardware architecture for accelerating pre-alignment in DNA short read mapping od Mohammed Alser, Hasan Hassan, Hongyi Xin, Oğuz Ergin, Onur Mutlu, Can Alkan

    Wydane 2017
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  5. 5
    A framework for high-throughput sequence alignment using real processing-in-memory systems

    A framework for high-throughput sequence alignment using real processing-in-memory systems od Safaa Diab, Amir Nassereldine, Mohammed Alser, Juan Gómez-Luna, Onur Mutlu, Izzat El Hajj

    Wydane 2023
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  6. 6
    Accelerating Genome Analysis: A Primer on an Ongoing Journey

    Accelerating Genome Analysis: A Primer on an Ongoing Journey od Mohammed Alser, Zülal Bingöl, Damla Senol Cali, Jeremie Kim, Saugata Ghose, Can Alkan, Onur Mutlu

    Wydane 2020
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  7. 7
    Apollo: a sequencing-technology-independent, scalable and accurate assembly polishing algorithm

    Apollo: a sequencing-technology-independent, scalable and accurate assembly polishing algorithm od Can Fırtına, Jeremie S. Kim, Mohammed Alser, Damla Senol Cali, A. Ercüment Çiçek, Can Alkan, Onur Mutlu

    Wydane 2020
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  8. 8
    From molecules to genomic variations: Accelerating genome analysis via intelligent algorithms and architectures

    From molecules to genomic variations: Accelerating genome analysis via intelligent algorithms and architectures od Mohammed Alser, Joël Lindegger, Can Fırtına, Nour Almadhoun, Haiyu Mao, Gagandeep Singh, Juan Gómez-Luna, Onur Mutlu

    Wydane 2022
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  9. 9
    RUBICON: a framework for designing efficient deep learning-based genomic basecallers

    RUBICON: a framework for designing efficient deep learning-based genomic basecallers od Gagandeep Singh, Mohammed Alser, Kristof Denolf, Can Fırtına, Alireza Khodamoradi, Meryem Banu Cavlak, Henk Corporaal, Onur Mutlu

    Wydane 2024
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  10. 10
    GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies

    GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies od Jeremie S. Kim, Damla Senol Cali, Hongyi Xin, Donghyuk Lee, Saugata Ghose, Mohammed Alser, Hasan Hassan, Oğuz Ergin, Can Alkan, Onur Mutlu

    Wydane 2018
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  11. 11
    Technology dictates algorithms: recent developments in read alignment

    Technology dictates algorithms: recent developments in read alignment od Mohammed Alser, Jeremy Rotman, Dhrithi Deshpande, Kodi Taraszka, Huwenbo Shi, Pelin Icer Baykal, Harry Taegyun Yang, Victor Xue, Sergey Knyazev, Benjamin D. Singer, Brunilda Balliu, David Koslicki, Pavel Skums, Alex Zelikovsky, Can Alkan, Onur Mutlu, Serghei Mangul

    Wydane 2021
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  12. 12
    Awareness of ovarian cancer risk and protective factors: A national cross-sectional study from Palestine

    Awareness of ovarian cancer risk and protective factors: A national cross-sectional study from Palestine od Mohamedraed Elshami, Aya Tuffaha, Areej Yaseen, Mohammed Alser, Ibrahim Al‐Slaibi, Hadeel Jabr, Sara Nawaf Ubaiat, Salma Khader, Reem Khraishi, Inas Jaber, Zeina Abu Arafeh, Sondos Al-Madhoun, Aya Alqattaa, Asmaa Abd El Hadi, Ola Barhoush, Maysun Hijazy, Tamara Eleyan, Amany Alser, Amal Abu Hziema, Amany Shatat, Falasteen Almakhtoob, Balqees Mohamad, Walaa Farhat, Yasmeen Abuamra, Hanaa Mousa, Reem Adawi, Alaa Musallam, Nasser Abu-El-Noor, Bettina Böttcher

    Wydane 2022
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  13. 13
    Critical Assessment of Metagenome Interpretation: the second round of challenges

    Critical Assessment of Metagenome Interpretation: the second round of challenges od Fernando Meyer, Adrian Fritz, Zhi-Luo Deng, David Koslicki, Till Robin Lesker, Alexey Gurevich, Gary Robertson, Mohammed Alser, Dmitry Antipov, Francesco Beghini, Denis Bertrand, Jaqueline Brito, C. Titus Brown, Jan P. Buchmann, Aydın Buluç, Bo Chen, Rayan Chikhi, Philip T. L. C. Clausen, Alexandru Cristian, Piotr Wojciech Dąbrowski, Aaron E. Darling, Rob Egan, Eleazar Eskin, Evangelos Georganas, Eugene Goltsman, Melissa A. Gray, Lars Hestbjerg Hansen, Steven Hofmeyr, Pingqin Huang, Luiz Irber, Huijue Jia, Tue Sparholt Jørgensen, Silas Kieser, Terje Klemetsen, Axel Kola, Mikhail Kolmogorov, Anton Korobeynikov, Jason C. Kwan, Nathan LaPierre, Claire Lemaitre, Chenhao Li, Antoine Limasset, Fábio Malcher Miranda, Serghei Mangul, Vanessa R. Marcelino, Camille Marchet, Pierre Marijon, Dmitry Meleshko, Daniel R. Mende, Alessio Milanese, Niranjan Nagarajan, Jakob Nybo Nissen, Sergey Nurk, Leonid Oliker, Lucas Paoli, Pierre Peterlongo, Vitor C. Piro, Jacob S. Porter, Simon Rasmussen, Evan Rees, Knut Reinert, Bernhard Y. Renard, Espen Mikal Robertsen, Gail Rosen, Hans‐Joachim Ruscheweyh, Varuni Sarwal, Nicola Segata, Enrico Seiler, Lizhen Shi, Fengzhu Sun, Shinichi Sunagawa, Søren J. Sørensen, Ashleigh Thomas, Chengxuan Tong, Mirko Trajkovski, Julien Tremblay, Gherman Uritskiy, Riccardo Vicedomini, Zhengyang Wang, Ziye Wang, Zhong Wang, Andrew Warren, Nils Peder Willassen, Katherine Yelick, Ronghui You, Georg Zeller, Zhengqiao Zhao, Shanfeng Zhu, Jie Zhu, Rubén Garrido‐Oter, Petra Gastmeier, Stéphane Hacquard, Susanne Häußler, Ariane Khaledi, Friederike Maechler, Fantin Mesny, Simona Radutoiu, Paul Schulze‐Lefert, Nathiana Smit, Till Strowig

    Wydane 2022
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