Resultats de la cerca - Mohammad Lotfollahi

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  1. 1
    Predicting cell morphological responses to perturbations using generative modeling

    Predicting cell morphological responses to perturbations using generative modeling per Alessandro Palma, Fabian J. Theis, Mohammad Lotfollahi

    Publicat 2025
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  2. 2
    Conditional out-of-distribution generation for unpaired data using transfer VAE

    Conditional out-of-distribution generation for unpaired data using transfer VAE per Mohammad Lotfollahi, Mohsen Naghipourfar, Fabian J. Theis, Florian Wolf

    Publicat 2020
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  3. 3
    Machine learning for perturbational single-cell omics

    Machine learning for perturbational single-cell omics per Yuge Ji, Mohammad Lotfollahi, Florian Wolf, Fabian J. Theis

    Publicat 2021
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  4. 4
    The future of rapid and automated single-cell data analysis using reference mapping

    The future of rapid and automated single-cell data analysis using reference mapping per Mohammad Lotfollahi, Yuhan Hao, Fabian J. Theis, Rahul Satija

    Publicat 2024
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  5. 5
    Multigrate: single-cell multi-omic data integration

    Multigrate: single-cell multi-omic data integration per Anastasia Litinetskaya, Maiia Shulman, Fabiola Curion, Artur Szałata, Alireza Omidi, Mohammad Lotfollahi, Fabian J. Theis

    Publicat 2022
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  6. 6
    Single-cell reference mapping to construct and extend cell-type hierarchies

    Single-cell reference mapping to construct and extend cell-type hierarchies per Lieke Michielsen, Mohammad Lotfollahi, Daniel Strobl, Lisa Sikkema, Marcel J. T. Reinders, Fabian J. Theis, Ahmed Mahfouz

    Publicat 2023
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  7. 7
    Deep generative modeling of transcriptional dynamics for RNA velocity analysis in single cells

    Deep generative modeling of transcriptional dynamics for RNA velocity analysis in single cells per Adam Gayoso, Philipp Weiler, Mohammad Lotfollahi, Dominik Klein, Justin Hong, Aaron Streets, Fabian J. Theis, Nir Yosef

    Publicat 2023
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  8. 8
    Biologically informed deep learning to query gene programs in single-cell atlases

    Biologically informed deep learning to query gene programs in single-cell atlases per Mohammad Lotfollahi, Sergei Rybakov, Karin Hrovatin, Soroor Hediyeh-zadeh, Carlos Talavera‐López, Alexander V. Misharin, Fabian J. Theis

    Publicat 2023
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  9. 9
    Population-level integration of single-cell datasets enables multi-scale analysis across samples

    Population-level integration of single-cell datasets enables multi-scale analysis across samples per Carlo De Donno, Soroor Hediyeh-zadeh, Amir Ali Moinfar, Marco Wagenstetter, Luke Zappia, Mohammad Lotfollahi, Fabian J. Theis

    Publicat 2023
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  10. 10
    Query to reference single-cell integration with transfer learning

    Query to reference single-cell integration with transfer learning per Mohammad Lotfollahi, Mohsen Naghipourfar, Malte D. Luecken, M. Javad Khajavi, Maren Büttner, Žiga Avsec, Alexander V. Misharin, Fabian J. Theis

    Publicat 2020
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  11. 11
    Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases

    Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases per Anastasia Litinetskaya, Maiia Shulman, Soroor Hediyeh-zadeh, Amir Ali Moinfar, Fabiola Curion, Artur Szałata, Alireza Omidi, Mohammad Lotfollahi, Fabian J. Theis

    Publicat 2024
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  12. 12
    Deep learning in spatially resolved transcriptomics: a comprehensive technical view

    Deep learning in spatially resolved transcriptomics: a comprehensive technical view per Roxana Zahedi, Mohammad Reza Eftekhariyan Ghamsari, Ahmadreza Argha, Callum Macphillamy, Amin Beheshti, Roohallah Alizadehsani, Nigel H. Lovell, Mohammad Lotfollahi, Hamid Alinejad‐Rokny

    Publicat 2024
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  13. 13
    Learning interpretable cellular responses to complex perturbations in high-throughput screens

    Learning interpretable cellular responses to complex perturbations in high-throughput screens per Mohammad Lotfollahi, Anna Klimovskaia Susmelj, Carlo De Donno, Yuge Ji, Ignacio L. Ibarra, F. Alexander Wolf, Nafissa Yakubova, Fabian J. Theis, David López-Paz

    Publicat 2021
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  14. 14
    Multi-modal generative modeling for joint analysis of single-cell T cell receptor and gene expression data

    Multi-modal generative modeling for joint analysis of single-cell T cell receptor and gene expression data per Felix Drost, 洋一 岸, Irene Bonafonte-Pardàs, Lisa M. Dratva, Rik G.H. Lindeboom, Muzlifah Haniffa, Sarah A. Teichmann, Fabian J. Theis, Mohammad Lotfollahi, Benjamin Schubert

    Publicat 2024
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  15. 15
    Mapping single-cell data to reference atlases by transfer learning

    Mapping single-cell data to reference atlases by transfer learning per Mohammad Lotfollahi, Mohsen Naghipourfar, Malte D. Luecken, M. Javad Khajavi, Maren Büttner, Marco Wagenstetter, Žiga Avsec, Adam Gayoso, Nir Yosef, Marta Interlandi, Sergei Rybakov, Alexander V. Misharin, Fabian J. Theis

    Publicat 2021
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  16. 16
    Squidpy: a scalable framework for spatial omics analysis

    Squidpy: a scalable framework for spatial omics analysis per Giovanni Palla, Hannah Spitzer, Michal Klein, David S. Fischer, Anna C. Schaar, Louis B. Kuemmerle, Sergei Rybakov, Ignacio L. Ibarra, Olle Holmberg, Isaac Virshup, Mohammad Lotfollahi, Sabrina Richter, Fabian J. Theis

    Publicat 2022
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  17. 17
    Squidpy: a scalable framework for spatial single cell analysis

    Squidpy: a scalable framework for spatial single cell analysis per Giovanni Palla, Hannah Spitzer, Michal Klein, David S. Fischer, Anna C. Schaar, Louis B. Kuemmerle, Sergei Rybakov, Ignacio L. Ibarra, Olle Holmberg, Isaac Virshup, Mohammad Lotfollahi, Sabrina Richter, Fabian J. Theis

    Publicat 2021
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  18. 18
    Quantitative characterization of cell niches in spatial atlases

    Quantitative characterization of cell niches in spatial atlases per Sebastian Birk, Irene Bonafonte-Pardàs, Adib Miraki Feriz, Adam Boxall, Eneritz Agirre, Fani Memi, Anna Maguza, Rong Fan, Gonçalo Castelo‐Branco, Fabian J. Theis, Omer Ali Bayraktar, Carlos Talavera‐López, Mohammad Lotfollahi

    Publicat 2024
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  19. 19
    Quantitative characterization of cell niches in spatially resolved omics data

    Quantitative characterization of cell niches in spatially resolved omics data per Sebastian Birk, Irene Bonafonte-Pardàs, Adib Miraki Feriz, Adam R. Boxall, Eneritz Agirre, Fani Memi, Anna Maguza, Anamika Yadav, Erick Armingol, Rong Fan, Gonçalo Castelo‐Branco, Fabian J. Theis, Omer Ali Bayraktar, Carlos Talavera‐López, Mohammad Lotfollahi

    Publicat 2025
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  20. 20
    Predicting cellular responses to complex perturbations in high‐throughput screens

    Predicting cellular responses to complex perturbations in high‐throughput screens per Mohammad Lotfollahi, Anna Klimovskaia Susmelj, Carlo De Donno, Leon Hetzel, Yuge Ji, Ignacio L. Ibarra, Sanjay Srivatsan, Mohsen Naghipourfar, Riza M. Daza, Beth Martin, Jay Shendure, José L. McFaline‐Figueroa, Pierre Boyeau, F. Alexander Wolf, Nafissa Yakubova, Stephan Günnemann, Cole Trapnell, David López-Paz, Fabian J. Theis

    Publicat 2023
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