Risultati della ricerca - Mingchao Xie

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  1. 1
    MSIsensor: microsatellite instability detection using paired tumor-normal sequence data

    MSIsensor: microsatellite instability detection using paired tumor-normal sequence data di Beifang Niu, Kai Ye, Qunyuan Zhang, Charles Lu, Mingchao Xie, Michael D. McLellan, Michael C. Wendl, Li Ding

    Pubblicazione 2013
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  2. 2
    Landscape of homologous recombination deficiencies in solid tumours: analyses of two independent genomic datasets

    Landscape of homologous recombination deficiencies in solid tumours: analyses of two independent genomic datasets di Zhongwu Lai, Matthew Brosnan, Ethan S. Sokol, Mingchao Xie, Jonathan R. Dry, Elizabeth A. Harrington, J. Carl Barrett, Darren Hodgson

    Pubblicazione 2022
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  3. 3
    Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods

    Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods di Michael Stevens, Jeffrey B. Cheng, Daofeng Li, Mingchao Xie, Chibo Hong, Cécile L. Maire, Keith L. Ligon, Martin Hirst, Marco A. Marra, J Costello, Ting Wang

    Pubblicazione 2013
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  4. 4
    Comparative Epigenomic Annotation of Regulatory DNA

    Comparative Epigenomic Annotation of Regulatory DNA di Shu Dong XIAO, Dan Xie, Xiaoyi Cao, Pengfei Yu, Xiaoyun Xing, Chieh-Chun Chen, Meagan Musselman, Mingchao Xie, Franklin D. West, Harris A. Lewin, Ting Wang, Sheng Zhong

    Pubblicazione 2012
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  5. 5
    The impact of chromosomal translocation locus and fusion oncogene coding sequence in synovial sarcomagenesis

    The impact of chromosomal translocation locus and fusion oncogene coding sequence in synovial sarcomagenesis di Kevin B. Jones, Jared J. Barrott, Mingchao Xie, Malay Haldar, H Jin, J-F Zhu, Michael J. Monument, Tim Mosbruger, Ellen M. Langer, R. Lor Randall, Richard K. Wilson, Bradley R. Cairns, Li Ding, Mario R. Capecchi

    Pubblicazione 2016
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  6. 6
    The Human Epigenome Browser at Washington University

    The Human Epigenome Browser at Washington University di Xin Zhou, Brett Maricque, Mingchao Xie, Daofeng Li, Vasavi Sundaram, Eric A Martin, Brian C. Koebbe, Cydney Nielsen, Martin Hirst, Peggy Farnham, Robert M. Kuhn, Jingchun Zhu, Ivan Smirnov, W. James Kent, David Haussler, Pamela A. F. Madden, J Costello, Ting Wang

    Pubblicazione 2011
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  7. 7
    Divergent viral presentation among human tumors and adjacent normal tissues

    Divergent viral presentation among human tumors and adjacent normal tissues di Song Cao, Michael C. Wendl, Matthew A. Wyczalkowski, Kristine M. Wylie, Kai Ye, Reyka G. Jayasinghe, Mingchao Xie, Song Wu, Beifang Niu, Robert L. Grubb, Kimberly Johnson, Hiram A. Gay, Ken Chen, Janet S. Rader, John F. DiPersio, Feng Chen, Li Ding

    Pubblicazione 2016
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  8. 8
    Molecular classification and biomarkers of outcome with immunotherapy in extensive-stage small-cell lung cancer: analyses of the CASPIAN phase 3 study

    Molecular classification and biomarkers of outcome with immunotherapy in extensive-stage small-cell lung cancer: analyses of the CASPIAN phase 3 study di Mingchao Xie, Miljenka Vuko, Jaime Rodriguez‐Canales, Johannes Zimmermann, Markus Schick, Cathy O’Brien, Luis Paz‐Ares, Jonathan W. Goldman, Marina Chiara Garassino, Carl M. Gay, John V. Heymach, Haiyi Jiang, J. Carl Barrett, Ross Stewart, Zhongwu Lai, Lauren A. Byers, Charles M. Rudin, Yashaswi Shrestha

    Pubblicazione 2024
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  9. 9
    Mutational landscape and significance across 12 major cancer types

    Mutational landscape and significance across 12 major cancer types di Cyriac Kandoth, Michael D. McLellan, Fabio Vandin, Kai Ye, Beifang Niu, Charles Lu, Mingchao Xie, Qunyuan Zhang, Joshua F. McMichael, Matthew A. Wyczalkowski, Mark D.M. Leiserson, Christopher A. Miller, John S. Welch, Matthew J. Walter, Michael C. Wendl, Timothy J. Ley, Richard K. Wilson, Benjamin J. Raphael, Li Ding

    Pubblicazione 2013
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  10. 10
    Systematic discovery of complex insertions and deletions in human cancers

    Systematic discovery of complex insertions and deletions in human cancers di Kai Ye, Jiayin Wang, Reyka G. Jayasinghe, Eric-Wubbo Lameijer, Joshua F. McMichael, Jie Ning, Michael D. McLellan, Mingchao Xie, Song Cao, Venkata Yellapantula, Kuan‐lin Huang, Adam Scott, Steven M. Foltz, Beifang Niu, Kimberly J. Johnson, Matthijs Moed, P. Eline Slagboom, Feng Chen, Michael C. Wendl, Li Ding

    Pubblicazione 2015
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  11. 11
    Durvalumab ± Tremelimumab + Platinum-Etoposide in Extensive-Stage Small Cell Lung Cancer (CASPIAN): Outcomes by PD-L1 Expression and Tissue Tumor Mutational Burden

    Durvalumab ± Tremelimumab + Platinum-Etoposide in Extensive-Stage Small Cell Lung Cancer (CASPIAN): Outcomes by PD-L1 Expression and Tissue Tumor Mutational Burden di Luis Paz‐Ares, Marina Chiara Garassino, Yuanbin Chen, Niels Reinmuth, Katsuyuki Hotta, Artem Poltoratskiy, Dmytro Trukhin, Maximilian J. Hochmair, Mustafa Özgüroğlu, Jun Ho Ji, Galina Statsenko, Nikolay Conev, Igor Bondarenko, Libor Havel, György Losonczy, Mingchao Xie, Zhongwu Lai, Nadia Godin-Heymann, Helen Mann, Haiyi Jiang, Yashaswi Shrestha, Jonathan W. Goldman

    Pubblicazione 2023
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  12. 12
    Age-related mutations associated with clonal hematopoietic expansion and malignancies

    Age-related mutations associated with clonal hematopoietic expansion and malignancies di Mingchao Xie, Charles Lu, Jiayin Wang, Michael D. McLellan, Kimberly Johnson, Michael C. Wendl, Joshua F. McMichael, Heather K. Schmidt, Venkata Yellapantula, Christopher A. Miller, Bradley A. Ozenberger, John S. Welch, Daniel C. Link, Matthew J. Walter, Elaine R. Mardis, John F. DiPersio, Feng Chen, Richard K. Wilson, Timothy J. Ley, Li Ding

    Pubblicazione 2014
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  13. 13
    <i>STAT3</i>Antisense Oligonucleotide Remodels the Suppressive Tumor Microenvironment to Enhance Immune Activation in Combination with Anti–PD-L1

    <i>STAT3</i>Antisense Oligonucleotide Remodels the Suppressive Tumor Microenvironment to Enhance Immune Activation in Combination with Anti–PD-L1 di Theresa A. Proia, Maneesh Singh, Richard Woessner, Larissa S. Carnevalli, Gayathri Bommakanti, Łukasz Magiera, Srimathi Srinivasan, Shaun Grosskurth, Michael P. Collins, Chris Womack, Matthew D. Griffin, Minwei Ye, Susan Cantin, Deanna L. Russell, Mingchao Xie, Adina Hughes, Nanhua Deng, Deanna A. Mele, Stephen E. Fawell, Simon T. Barry, Corinne Reimer, J. Carl Barrett, Patricia McCoon

    Pubblicazione 2020
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  14. 14
    Multifactorial Deep Learning Reveals Pan-Cancer Genomic Tumor Clusters with Distinct Immunogenomic Landscape and Response to Immunotherapy

    Multifactorial Deep Learning Reveals Pan-Cancer Genomic Tumor Clusters with Distinct Immunogenomic Landscape and Response to Immunotherapy di Feng Xie, Jianjun Zhang, Jiayin Wang, Alexandre Reuben, Wei Xu, Xin Yi, Frederick S. Varn, Yongsheng Ye, Junwen Cheng, Miao Yu, Yue Wang, Yufeng Liu, Mingchao Xie, Peng Du, Ke Ma, Xin Ma, Penghui Zhou, Shengli Yang, Yaobing Chen, Guoping Wang, Xuefeng Xia, Zhongxing Liao, John V. Heymach, Ignacio I. Wistuba, P. Andrew Futreal, Kai Ye, Chao Cheng, Tian Xia

    Pubblicazione 2020
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  15. 15
    DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape

    DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape di Mingchao Xie, Chibo Hong, Bo Zhang, Rebecca F. Lowdon, Xiaoyun Xing, Daofeng Li, Xin Zhou, Hyung Joo Lee, Cécile L. Maire, Keith L. Ligon, Philippe Gascard, Mahvash Sigaroudinia, Thea D. Tlsty, Theresa A. Kadlecek, Arthur Weiss, Henriette O’Geen, Peggy Farnham, Pamela A. F. Madden, Andrew J. Mungall, Angela Tam, Baljit Kamoh, Stephanie Cho, Richard A. Moore, Martin Hirst, Marco A. Marra, J Costello, Ting Wang

    Pubblicazione 2013
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  16. 16
    Integrated analysis of germline and somatic variants in ovarian cancer

    Integrated analysis of germline and somatic variants in ovarian cancer di Krishna Kanchi, Kimberly Johnson, Charles Lu, Michael D. McLellan, Mark D.M. Leiserson, Michael C. Wendl, Qunyuan Zhang, Daniel C. Koboldt, Mingchao Xie, Cyriac Kandoth, Joshua F. McMichael, Matthew A. Wyczalkowski, David E. Larson, Heather K. Schmidt, Christopher A. Miller, Robert S. Fulton, Paul T. Spellman, Elaine R. Mardis, Todd E. Druley, Timothy A. Graubert, Paul J. Goodfellow, Benjamin J. Raphael, Richard K. Wilson, Li Ding

    Pubblicazione 2014
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  17. 17
    Establishing guidelines to harmonize tumor mutational burden (TMB): in silico assessment of variation in TMB quantification across diagnostic platforms: phase I of the Friends of Cancer Research TMB Harmonization Project

    Establishing guidelines to harmonize tumor mutational burden (TMB): in silico assessment of variation in TMB quantification across diagnostic platforms: phase I of the Friends of C... di Diana M. Merino, Lisa M. McShane, David Fabrizio, Vincent Funari, Shu‐Jen Chen, James R. White, Paul Wenz, Jonathan Baden, J. Carl Barrett, Ruchi Chaudhary, Li Chen, Wangjuh Chen, Jen‐Hao Cheng, Dinesh Cyanam, Jennifer S. Dickey, Vikas Gupta, Matthew D. Hellmann, Elena Helman, Yali Li, Joerg Maas, Arnaud Papin, Rajesh Patidar, Katie Quinn, Naiyer A. Rizvi, Hongseok Tae, Christine K. Ward, Mingchao Xie, Ahmet Zehir, Chen Zhao, Manfred Dietel, Albrecht Stenzinger, Mark Stewart, Jeff Allen

    Pubblicazione 2020
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  18. 18
    Patterns and functional implications of rare germline variants across 12 cancer types

    Patterns and functional implications of rare germline variants across 12 cancer types di Charles Lu, Mingchao Xie, Michael C. Wendl, Jiayin Wang, Michael D. McLellan, Mark D.M. Leiserson, Kuan‐lin Huang, Matthew A. Wyczalkowski, Reyka G. Jayasinghe, Tapahsama Banerjee, Jie Ning, Piyush Tripathi, Qunyuan Zhang, Beifang Niu, Kai Ye, Heather K. Schmidt, Robert S. Fulton, Joshua F. McMichael, Prag Batra, Cyriac Kandoth, Maheetha Bharadwaj, Daniel C. Koboldt, Christopher A. Miller, Krishna Kanchi, James M. Eldred, David E. Larson, John S. Welch, Ming You, Bradley A. Ozenberger, Ramaswamy Govindan, Matthew J. Walter, Matthew J. Ellis, Elaine R. Mardis, Timothy A. Graubert, John F. DiPersio, Timothy J. Ley, Richard K. Wilson, Paul J. Goodfellow, Benjamin J. Raphael, Feng Chen, Kimberly J. Johnson, Jeffrey D. Parvin, Li Ding

    Pubblicazione 2015
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  19. 19
    Aligning tumor mutational burden (TMB) quantification across diagnostic platforms: phase II of the Friends of Cancer Research TMB Harmonization Project

    Aligning tumor mutational burden (TMB) quantification across diagnostic platforms: phase II of the Friends of Cancer Research TMB Harmonization Project di Diana Merino Vega, Laura M. Yee, Lisa M. McShane, P. Mickey Williams, L. Chen, Tomas Vilimas, David Fabrizio, Vincent Funari, Justin Y. Newberg, L.K. Bruce, S.-J. Chen, Jonathan Baden, J. Carl Barrett, Philip Beer, Matthew G. Butler, Jen‐Hao Cheng, Jeffrey Conroy, Dinesh Cyanam, Kenneth R. Eyring, E. Garcia, G. Green, Vivi Raundahl Gregersen, Matthew D. Hellmann, Laurel A. Keefer, Laura Lasiter, Alexander J. Lazar, M.-C. Li, Laura E. MacConaill, K. Meier, Hestia Mellert, Sarabjot Pabla, Aparna Pallavajjalla, Gary A. Pestano, Roberto Salgado, Raed Samara, Ethan S. Sokol, Phillip Stafford, Jan Budczies, Albrecht Stenzinger, W Tom, Kenneth C. Valkenburg, X.Z. Wang, Victor Weigman, Mingchao Xie, Qiqi Xie, Ahmet Zehir, Chen Zhao, Yiqiang Zhao, Mark Stewart, Jeff Allen

    Pubblicazione 2021
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