Ohcanbohtosat - Miller, Webb

Gene Length and Proximity to Neighbors Affect Genome-Wide Expression Levels Dahkki Chiaromonte, Francesca, Miller, Webb, Bouhassira,, Eric E.

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CAGE: Combinatorial Analysis of Gene-Cluster Evolution Dahkki Song, Giltae, Zhang, Louxin, Vinar, Tomas, Miller, Webb

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CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets Dahkki Addo-Quaye, Charles, Miller, Webb, Axtell, Michael J.

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SIMULTANEOUS HISTORY RECONSTRUCTION FOR COMPLEX GENE CLUSTERS IN MULTIPLE SPECIES Dahkki Zhang, Yu, Song, Giltae, Hsu, Chih-Hao, Miller, Webb

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Evaluation of methods for detecting conversion events in gene clusters Dahkki Song, Giltae, Hsu, Chih-Hao, Riemer, Cathy, Miller, Webb

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Reconstructing large regions of an ancestral mammalian genome in silico Dahkki Blanchette, Mathieu, Green, Eric D., Miller, Webb, Haussler, David

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Identification of indels in next-generation sequencing data Dahkki Ratan, Aakrosh, Olson, Thomas L, Loughran, Thomas P, Miller, Webb

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EnteriX 2003: visualization tools for genome alignments of Enterobacteriaceae Dahkki Florea, Liliana, McClelland, Michael, Riemer, Cathy, Schwartz, Scott, Miller, Webb

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Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes Dahkki Kent, W. James, Baertsch, Robert, Hinrichs, Angie, Miller, Webb, Haussler, David

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A Computer Program for Aligning a cDNA Sequence with a Genomic DNA Sequence Dahkki Florea, Liliana, Hartzell, George, Zhang, Zheng, Rubin, Gerald M., Miller, Webb

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Phenotype Association Tools in Galaxy Dahkki Giardine, Belinda M., Riemer, Cathy, Burhans, Richard, Ratan, Aakrosh, Miller, Webb

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Calling SNPs without a reference sequence Dahkki Ratan, Aakrosh, Zhang, Yu, Hayes, Vanessa M, Schuster, Stephan C, Miller, Webb

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Analysis of the Quality and Utility of Random Shotgun Sequencing at Low Redundancies Dahkki Bouck, John, Miller, Webb, Gorrell, James H., Muzny, Donna, Gibbs, Richard A.

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zPicture: Dynamic Alignment and Visualization Tool for Analyzing Conservation Profiles Dahkki Ovcharenko, Ivan, Loots, Gabriela G., Hardison, Ross C., Miller, Webb, Stubbs, Lisa

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Using genomic data to unravel the root of the placental mammal phylogeny Dahkki Murphy, William J., Pringle, Thomas H., Crider, Tess A., Springer, Mark S., Miller, Webb

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Evolutionary History Reconstruction for Mammalian Complex Gene Clusters Dahkki Zhang, Yu, Song, Giltae, Vinař, Tomáš, Green, Eric D., Siepel, Adam, Miller, Webb

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Genomic Sequence Analysis of the Mouse Naip Gene Array Dahkki Endrizzi, Matthew G., Hadinoto, Vey, Growney, Joseph D., Miller, Webb, Dietrich, William F.

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An Effective Method for Detecting Gene Conversion Events in Whole Genomes Dahkki Hsu, Chih-Hao, Zhang, Yu, Hardison, Ross C., Green, Eric D., Miller, Webb

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Comparison of Sequencing Platforms for Single Nucleotide Variant Calls in a Human Sample Dahkki Ratan, Aakrosh, Miller, Webb, Guillory, Joseph, Stinson, Jeremy, Seshagiri, Somasekar, Schuster, Stephan C.

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Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences Dahkki King, David C., Taylor, James, Elnitski, Laura, Chiaromonte, Francesca, Miller, Webb, Hardison, Ross C.

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