Search Results - Michal Slyper

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  1. 1
    Control of Breast Cancer Growth and Initiation by the Stem Cell–Associated Transcription Factor TCF3

    Control of Breast Cancer Growth and Initiation by the Stem Cell–Associated Transcription Factor TCF3 by Michal Slyper, Amit Shahar, Anat Bar-Ziv, Roy Z. Granit, Tamar Hamburger, Bella Maly, Tamar Peretz, Ittai Ben‐Porath

    Published 2012
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  2. 2
    Cumulus provides cloud-based data analysis for large-scale single-cell and single-nucleus RNA-seq

    Cumulus provides cloud-based data analysis for large-scale single-cell and single-nucleus RNA-seq by Bo Li, Joshua Gould, Yiming Yang, Siranush Sarkizova, Marcin Tabaka, Orr Ashenberg, Yanay Rosen, Michal Slyper, Monika S. Kowalczyk, Alexandra‐Chloé Villani, Timothy L. Tickle, Nir Hacohen, Orit Rozenblatt–Rosen, Aviv Regev

    Published 2020
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  3. 3
    Single cell census of human kidney organoids shows reproducibility and diminished off-target cells after transplantation

    Single cell census of human kidney organoids shows reproducibility and diminished off-target cells after transplantation by Ayshwarya Subramanian, Eriene-Heidi Sidhom, Maheswarareddy Emani, Katherine A. Vernon, Nareh Sahakian, Yiming Zhou, Maria Kost‐Alimova, Michal Slyper, Julia Waldman, Danielle Dionne, Lan Nguyễn, Astrid Weins, Jamie L. Marshall, Orit Rosenblatt-Rosen, Aviv Regev, Anna Greka

    Published 2019
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  4. 4
    N-acetylneuraminic acid links immune exhaustion and accelerated memory deficit in diet-induced obese Alzheimer’s disease mouse model

    N-acetylneuraminic acid links immune exhaustion and accelerated memory deficit in diet-induced obese Alzheimer’s disease mouse model by Stefano Suzzi, Tommaso Croese, Adi Ravid, Or Gold, Abbe R. Clark, Sedi Medina, Daniel Kitsberg, Miriam Adam, Katherine A. Vernon, Eva Kohnert, Inbar Shapira, Sergey Malitsky, Maxim Itkin, Alexander Brandis, Tevie Mehlman, Tomer Meir Salame, Sarah Phoebeluc Colaiuta, Liora Cahalon, Michal Slyper, Anna Greka, Naomi Habib, Michal Schwartz

    Published 2023
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  5. 5
    Integrated scRNA-Seq Identifies Human Postnatal Thymus Seeding Progenitors and Regulatory Dynamics of Differentiating Immature Thymocytes

    Integrated scRNA-Seq Identifies Human Postnatal Thymus Seeding Progenitors and Regulatory Dynamics of Differentiating Immature Thymocytes by Marieke Lavaert, Kai Ling Liang, Niels Vandamme, Jong-Eun Park, Juliette Roels, Monica S. Kowalczyk, Bo Li, Orr Ashenberg, Marcin Tabaka, Danielle Dionne, Timothy L. Tickle, Michal Slyper, Orit Rozenblatt–Rosen, Bart Vandekerckhove, Georges Leclercq, Aviv Regev, Pieter Van Vlierberghe, Martin Guilliams, Sarah A. Teichmann, Yvan Saeys, Tom Taghon

    Published 2020
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  6. 6
    Single‐Cell, Single‐Nucleus, and Spatial RNA Sequencing of the Human Liver Identifies Cholangiocyte and Mesenchymal Heterogeneity

    Single‐Cell, Single‐Nucleus, and Spatial RNA Sequencing of the Human Liver Identifies Cholangiocyte and Mesenchymal Heterogeneity by Tallulah Andrews, Jawairia Atif, Jeff C. Liu, Cátia T. Perciani, Xue‐Zhong Ma, Cornelia Thoeni, Michal Slyper, Gökçen Eraslan, Åsa Segerstolpe, Justin Manuel, Sai Chung, Erin Winter, Iulia Cirlan, Nicholas Khuu, Sandra E. Fischer, Orit Rozenblatt‐Rosen, Aviv Regev, Ian D. McGilvray, Gary D. Bader, Sonya A. MacParland

    Published 2021
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  7. 7
    Inference of single cell profiles from histology stains with the Single-Cell omics from Histology Analysis Framework (SCHAF)

    Inference of single cell profiles from histology stains with the Single-Cell omics from Histology Analysis Framework (SCHAF) by Charles Comiter, Eeshit Dhaval Vaishnav, Metamia Ciampricotti, Bo Li, Yiming Yang, Scott J. Rodig, Madison Turner, Kathleen L. Pfaff, Judit Jané‐Valbuena, Michal Slyper, Julia Waldman, Sébastien Vigneau, Jingyi Wu, Timothy R. Blosser, Åsa Segerstolpe, Daniel L. Abravanel, Nikil Wagle, Xiaowei Zhuang, Charles M. Rudin, Johanna Klughammer, Orit Rozenblatt–Rosen, Koseki J. Kobayash-Kirschvink, Jian Shu, Aviv Regev

    Published 2023
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  8. 8
    Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function

    Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function by Gökçen Eraslan, Eugene Drokhlyansky, Shankara Anand, Evgenij Fiškin, Ayshwarya Subramanian, Michal Slyper, Jiali Wang, Nicholas Van Wittenberghe, John M. Rouhana, Julia Waldman, Orr Ashenberg, Monkol Lek, Danielle Dionne, Thet Su Win, Michael S. Cuoco, Olena Kuksenko, Alexander M. Tsankov, Philip A. Branton, Jamie L. Marshall, Anna Greka, Gad Getz, Ayellet V. Segrè, François Aguet, Orit Rozenblatt–Rosen, Kristin Ardlie, Aviv Regev

    Published 2022
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  9. 9
    A revised airway epithelial hierarchy includes CFTR-expressing ionocytes

    A revised airway epithelial hierarchy includes CFTR-expressing ionocytes by Daniel T. Montoro, Adam L. Haber, Moshe Biton, Vladimír Vinarský, Brian Lin, Susan E. Birket, Feng Yuan, Sijia Chen, Hui Min Leung, Jorge Villoria, Noga Rogel, Grace Burgin, Alexander M. Tsankov, Avinash Waghray, Michal Slyper, Julia Waldman, Lan Nguyễn, Danielle Dionne, Orit Rozenblatt–Rosen, Purushothama Rao Tata, Hongmei Mou, Manjunatha Shivaraju, Hermann Bihler, Martin Mense, Guillermo J. Tearney, Steven M. Rowe, John F. Engelhardt, Aviv Regev, Jayaraj Rajagopal

    Published 2018
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  10. 10
    Single-cell RNA-seq reveals cell type–specific molecular and genetic associations to lupus

    Single-cell RNA-seq reveals cell type–specific molecular and genetic associations to lupus by Richard K. Perez, M. Grace Gordon, Meena Subramaniam, Min Cheol Kim, George C. Hartoularos, Sasha Targ, Yang Sun, Anton Ogorodnikov, Raymund Bueno, Andrew Lu, Michael Thompson, Nadav Rappoport, Andrew Dahl, Cristina Lanata, Mehrdad Matloubian, Lenka Maliskova, Serena S. Kwek, Tony Li, Michal Slyper, Julia Waldman, Danielle Dionne, Orit Rozenblatt–Rosen, Lawrence Fong, Maria Dall’Era, Brunilda Balliu, Aviv Regev, Jinoos Yazdany, Lindsey A. Criswell, Noah Zaitlen, Chun Ye

    Published 2022
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  11. 11
    Skin-resident innate lymphoid cells converge on a pathogenic effector state

    Skin-resident innate lymphoid cells converge on a pathogenic effector state by Piotr Bielecki, Samantha J. Riesenfeld, Jan-Christian Hütter, Elena Torlai Triglia, Monika S. Kowalczyk, Roberto R. Ricardo-González, Lian Mi, María Carolina Amezcua Vesely, Lina Kroehling, Hao Xu, Michal Slyper, Christoph Muus, Leif S. Ludwig, Elena Christian, Liming Tao, Amanda J. Kedaigle, Holly R. Steach, Autumn G. York, Mathias Skadow, Parastou Yaghoubi, Danielle Dionne, Abigail Jarret, Heather M. McGee, Caroline Porter, Paula Licona-Limón, Will Bailis, Ruaidhrí Jackson, Nicola Gagliani, Georg Gasteiger, Richard M. Locksley, Aviv Regev, Richard A. Flavell

    Published 2021
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  12. 12
    Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis

    Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis by Christopher S. Smillie, Moshe Biton, José Ordovás-Montañés, Keri M. Sullivan, Grace Burgin, Daniel B. Graham, Rebecca H. Herbst, Noga Rogel, Michal Slyper, Julia Waldman, Malika Sud, Elizabeth Andrews, Gabriella Velonias, Adam L. Haber, Karthik A. Jagadeesh, Sanja Vicković, Junmei Yao, Christine Stevens, Danielle Dionne, Lan Nguyễn, Alexandra‐Chloé Villani, Matan Hofree, Elizabeth A. Creasey, Hailiang Huang, Orit Rozenblatt–Rosen, John J. Garber, Hamed Khalili, A. Nicole Desch, Mark J. Daly, Ashwin N. Ananthakrishnan, Alex K. Shalek, Ramnik J. Xavier, Aviv Regev

    Published 2019
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  13. 13
    A single-cell landscape of high-grade serous ovarian cancer

    A single-cell landscape of high-grade serous ovarian cancer by Benjamin Izar, Itay Tirosh, Elizabeth H. Stover, Isaac Wakiro, Michael S. Cuoco, Idan Alter, Christopher Rodman, Rachel Leeson, Mei-Ju Su, Parin Shah, Marcin Iwanicki, Sarah R. Walker, Abhay Kanodia, Johannes C. Melms, Shaolin Mei, Jia‐Ren Lin, Caroline Porter, Michal Slyper, Julia Waldman, Livnat Jerby‐Arnon, Orr Ashenberg, Titus J. Brinker, Caitlin E. Mills, Meri Rogava, Sébastien Vigneau, Peter K. Sorger, Levi A. Garraway, Panagiotis A. Konstantinopoulos, Joyce F. Liu, Ursula A. Matulonis, Bruce E. Johnson, Orit Rozenblatt–Rosen, Asaf Rotem, Aviv Regev

    Published 2020
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  14. 14
    Protective role for kidney TREM2 macrophages in obesity- and diabetes-induced kidney injury

    Protective role for kidney TREM2 macrophages in obesity- and diabetes-induced kidney injury by Ayshwarya Subramanian, Katherine A. Vernon, Yiming Zhou, Jamie L. Marshall, Maria Alimova, Carlos Arevalo, Fan Zhang, Michal Slyper, Julia Waldman, Mónica S. Montesinos, Danielle Dionne, Lan Nguyễn, Michael S. Cuoco, Dan Dubinsky, Jason Q. Purnell, Keith Keller, Samuel H. Sturner, Elizabeth Grinkevich, Ayan Ghoshal, A. Kötek, Giorgio Trivioli, Nathan Richoz, Mary Beth Humphrey, Isabella G. Darby, Sarah J. Miller, Yingping Xu, Astrid Weins, Alexandra Chloe-Villani, Steven L. Chang, Matthias Kretzler, Orit Rosenblatt-Rosen, Jillian L. Shaw, Kurt A. Zimmerman, Menna R. Clatworthy, Aviv Regev, Anna Greka

    Published 2024
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  15. 15
    Decoding human fetal liver haematopoiesis

    Decoding human fetal liver haematopoiesis by Dorin-Mirel Popescu, Rachel A. Botting, Emily Stephenson, Kile Green, Simone Webb, Laura Jardine, Emily F. Calderbank, Krzysztof Polański, Issac Goh, Mirjana Efremova, Meghan Acres, Daniel Maunder, Péter Végh, Yorick Gitton, Jong-Eun Park, Roser Vento‐Tormo, Zhichao Miao, David Dixon, Rachel Rowell, David McDonald, James Fletcher, Elizabeth Poyner, Gary Reynolds, Michael Mather, Corina Moldovan, Lira Mamanova, Frankie Greig, Matthew D. Young, Kerstin B. Meyer, Steven Lisgo, Jaume Bacardit, Andrew Fuller, Ben Millar, Barbara A. Innes, Susan Lindsay, Michael J. T. Stubbington, Monika S. Kowalczyk, Bo Li, Orr Ashenberg, Marcin Tabaka, Danielle Dionne, Timothy L. Tickle, Michal Slyper, Orit Rozenblatt–Rosen, Andrew Filby, Peter J Carey, Alexandra‐Chloé Villani, Anindita Roy, Aviv Regev, Alain Chédotal, Irene Roberts, Berthold Göttgens, Sam Behjati, Elisa Laurenti, Sarah A. Teichmann, Muzlifah Haniffa

    Published 2019
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  16. 16
    A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

    A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors by Michal Slyper, Caroline Porter, Orr Ashenberg, Julia Waldman, Eugene Drokhlyansky, Isaac Wakiro, Christopher S. Smillie, Gabriela Smith-Rosario, Jingyi Wu, Danielle Dionne, Sébastien Vigneau, Judit Jané‐Valbuena, Timothy L. Tickle, Sara Napolitano, Mei-Ju Su, Anand G. Patel, Åsa Karlström, Simon Gritsch, Masashi Nomura, Avinash Waghray, Satyen H. Gohil, Alexander M. Tsankov, Livnat Jerby‐Arnon, Ofir Cohen, Johanna Klughammer, Yanay Rosen, Joshua Gould, Lan Nguyễn, Matan Hofree, Peter J. Tramontozzi, Bo Li, Catherine J. Wu, Benjamin Izar, Rizwan Haq, F. Stephen Hodi, Charles H. Yoon, Aaron N. Hata, Suzanne J. Baker, Mario L. Suvà, Raphael Bueno, Elizabeth H. Stover, Michael R. Clay, Michael A. Dyer, Natalie B. Collins, Ursula A. Matulonis, Nikhil Wagle, Bruce E. Johnson, Asaf Rotem, Orit Rozenblatt–Rosen, Aviv Regev

    Published 2020
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  17. 17
    A spatial cell atlas of neuroblastoma reveals developmental, epigenetic and spatial axis of tumor heterogeneity

    A spatial cell atlas of neuroblastoma reveals developmental, epigenetic and spatial axis of tumor heterogeneity by Anand G. Patel, Orr Ashenberg, Natalie B. Collins, Åsa Segerstolpe, Sizun Jiang, Michal Slyper, Xin Huang, Chiara Caraccio, Hongjian Jin, Heather Sheppard, Ke Xu, Ti‐Cheng Chang, Brent A. Orr, Abbas Shirinifard, Richard H. Chapple, Amber Shen, Michael R. Clay, Ruth Tatevossian, Colleen Reilly, Jaimin Patel, Marybeth Lupo, Cynthia Cline, Danielle Dionne, Caroline Porter, Julia Waldman, Yunhao Bai, Bokai Zhu, Irving Barrera, Evan Murray, Sébastien Vigneau, Sara Napolitano, Isaac Wakiro, Jingyi Wu, Grace Grimaldi, Laura DelloStritto, Karla Helvie, Asaf Rotem, Ana Lako, Nicole Cullen, Kathleen L. Pfaff, Åsa Karlström, Judit Jané‐Valbuena, Ellen Todres, Aaron R. Thorner, Paul Geeleher, Scott J. Rodig, Xin Zhou, Elizabeth Stewart, Bruce E. Johnson, Gang Wu, Fei Chen, Jiyang Yu, Yury Goltsev, Garry P. Nolan, Orit Rozenblatt–Rosen, Aviv Regev, Michael A. Dyer

    Published 2024
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  18. 18
    A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features

    A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features by Johanna Klughammer, Daniel L. Abravanel, Åsa Segerstolpe, Timothy R. Blosser, Yury Goltsev, Yi Cui, Daniel Goodwin, Anubhav Sinha, Orr Ashenberg, Michal Slyper, Sébastien Vigneau, Judit Jané‐Valbuena, Shahar Alon, Chiara Caraccio, Judy Chen, Ofir Cohen, Nicole Cullen, Laura DelloStritto, Danielle Dionne, Janet Files, Allison Frangieh, Karla Helvie, Melissa E. Hughes, Stephanie Inga, Abhay Kanodia, Ana Lako, Colin MacKichan, Simon Mages, Noa Moriel, Evan Murray, Sara Napolitano, Kyleen Nguyen, Mor Nitzan, Rebecca Ortiz, Miraj Patel, Kathleen L. Pfaff, Caroline Porter, Asaf Rotem, Sarah Strauß, Ralf Strasser, Aaron R. Thorner, Madison Turner, Isaac Wakiro, Julia Waldman, Jingyi Wu, Jorge Gómez Tejeda Zañudo, Diane Zhang, Nancy U. Lin, Sara M. Tolaney, Eric P. Winer, Edward S. Boyden, Fei Chen, Garry P. Nolan, Scott J. Rodig, Xiaowei Zhuang, Orit Rozenblatt‐Rosen, Bruce E. Johnson, Aviv Regev, Nikhil Wagle

    Published 2024
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  19. 19
    Blood and immune development in human fetal bone marrow and Down syndrome

    Blood and immune development in human fetal bone marrow and Down syndrome by Laura Jardine, Simone Webb, Issac Goh, Mariana Quiroga Londoño, Gary Reynolds, Michael Mather, Bayanne Olabi, Emily Stephenson, Rachel A. Botting, Dave Horsfall, Justin Engelbert, Daniel Maunder, Nicole Mende, Caitlin Murnane, Emma Dann, Jim McGrath, Hamish W. King, Iwo Kuciński, Rachel Queen, Christopher D. Carey, Caroline Shrubsole, Elizabeth Poyner, Meghan Acres, Claire Jones, Thomas Ness, Rowen Coulthard, Natalina Elliott, Sorcha O’Byrne, Myriam Haltalli, John E. Lawrence, Steven Lisgo, Petra Balogh, Kerstin B. Meyer, Elena Prigmore, Kirsty Ambridge, Mika Sarkin Jain, Mirjana Efremova, Keir Pickard, Thomas Creasey, Jaume Bacardit, Deborah J. Henderson, Jonathan Coxhead, Andrew Filby, Rafiqul Hussain, David Dixon, David McDonald, Dorin-Mirel Popescu, Monika S. Kowalczyk, Bo Li, Orr Ashenberg, Marcin Tabaka, Danielle Dionne, Timothy L. Tickle, Michal Slyper, Orit Rozenblatt–Rosen, Aviv Regev, Sam Behjati, Elisa Laurenti, Nicola K. Wilson, Anindita Roy, Berthold Göttgens, Irene Roberts, Sarah A. Teichmann, Muzlifah Haniffa

    Published 2021
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  20. 20
    Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral entry and highlights inflammatory programs in putative target cells

    Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral entry and highlig... by Christoph Muus, Malte D. Luecken, Gökcen Eraslan, Avinash Waghray, Graham Heimberg, Lisa Sikkema, Yoshihiko Kobayashi, Eeshit Dhaval Vaishnav, Ayshwarya Subramanian, Christopher Smilie, Karthik Jagadeesh, Thu Elizabeth Duong, Evgenij Fiškin, Elena Torlai Triglia, Meshal Ansari, Peiwen Cai, Brian Lin, Justin Buchanan, Sijia Chen, Jian Shu, Adam L. Haber, Hattie Chung, Daniel T. Montoro, Taylor Adams, Hananeh Aliee, Jane Samuel, Allon Zaneta Andrusivova, Ilias Angelidis, Orr Ashenberg, Kevin Baßler, Christophe Bécavin, Inbal Benhar, Joseph Bergenstråhle, Ludvig Bergenstråhle, Liam Bolt, Emelie Braun, Linh T. Bui, Mark Chaffin, Evgeny Chichelnitskiy, Joshua Chiou, Thomas M. Conlon, Michael S. Cuoco, Marie Deprez, David S. Fischer, Astrid Gillich, Joshua Gould, Minzhe Guo, Austin J. Gutierrez, Arun C Habermann, Tyler Harvey, Peng He, Xiaomeng Hou, Lijuan Hu, Alok Jaiswal, Peiyong Jiang, Theodoros Kapellos, Christin S Kuo, Ludvig Larsson, Michael Leney-Greene, Kyungtae Lim, Monika Litviňuková, Lu Ji, Leif S. Ludwig, Wendy Luo, Henrike Maatz, Elo Madissoon, Lira Mamanova, Kasidet Manakongtreecheep, Charles‐Hugo Marquette, Ian Mbano, Alexi McAdams, Ross J. Metzger, Ahmad N. Nabhan, Sarah K. Nyquist, Lolita Penland, Olivier Poirion, Sergio Poli, CanCan Qi, Rachel Queen, Daniel Reichart, Iván O. Rosas, Jonas C. Schupp, Rahul Sinha, Rene Sit, Kamil Slowikowski, Michal Slyper, Neal Smith, Alex Sountoulidis, Maximilian Strunz, Dawei Sun, Carlos Talavera‐López, Peng Tan, Jessica Tantivit, Kyle J. Travaglini, Nathan R. Tucker, Katherine Vernon, Marc H. Wadsworth, Julia Waldman, Xiuting Wang, Wenjun Yan

    Published 2020
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