Rezultati - McLellan, Michael D.

PolyScan: An automatic indel and SNP detection approach to the analysis of human resequencing data od Chen, Ken, McLellan, Michael D., Ding, Li, Wendl, Michael C., Kasai, Yumi, Wilson, Richard K., Mardis, Elaine R.

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MSIsensor: microsatellite instability detection using paired tumor-normal sequence data od Niu, Beifang, Ye, Kai, Zhang, Qunyuan, Lu, Charles, Xie, Mingchao, McLellan, Michael D., Wendl, Michael C., Ding, Li

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VarScan: variant detection in massively parallel sequencing of individual and pooled samples od Koboldt, Daniel C., Chen, Ken, Wylie, Todd, Larson, David E., McLellan, Michael D., Mardis, Elaine R., Weinstock, George M., Wilson, Richard K., Ding, Li

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VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing od Koboldt, Daniel C., Zhang, Qunyuan, Larson, David E., Shen, Dong, McLellan, Michael D., Lin, Ling, Miller, Christopher A., Mardis, Elaine R., Ding, Li, Wilson, Richard K.

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Clonal Evolution Revealed by Whole Genome Sequencing in a Case of Primary Myelofibrosis Transformed to Secondary Acute Myeloid Leukemia od Engle, Elizabeth K., Fisher, Daniel A.C., Miller, Christopher A., McLellan, Michael D., Fulton, Robert S., Moore, Deborah M., Wilson, Richard K., Ley, Timothy J., Oh, Stephen T.

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BreakPoint Surveyor: a pipeline for structural variant visualization od Wyczalkowski, Matthew A, Wylie, Kristine M, Cao, Song, McLellan, Michael D, Flynn, Jennifer, Huang, Mo, Ye, Kai, Fan, Xian, Chen, Ken, Wendl, Michael C, Ding, Li

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HPV-EM: an accurate HPV detection and genotyping EM algorithm od Inkman, Matthew J., Jayachandran, Kay, Ellis, Thomas M., Ruiz, Fiona, McLellan, Michael D., Miller, Christopher A., Wu, Yufeng, Ojesina, Akinyemi I., Schwarz, Julie K., Zhang, Jin

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HPV transcript expression affects cervical cancer response to chemoradiation od Ruiz, Fiona J., Inkman, Matthew, Rashmi, Ramachandran, Muhammad, Naoshad, Gabriel, Nishanth, Miller, Christopher A., McLellan, Michael D., Goldstein, Michael, Markovina, Stephanie, Grigsby, Perry W., Zhang, Jin, Schwarz, Julie K.

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CMDS: a population-based method for identifying recurrent DNA copy number aberrations in cancer from high-resolution data od Zhang, Qunyuan, Ding, Li, Larson, David E., Koboldt, Daniel C., McLellan, Michael D., Chen, Ken, Shi, Xiaoqi, Kraja, Aldi, Mardis, Elaine R., Wilson, Richard K., Borecki, Ingrid B., Province, Michael A.

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Identification of a pan-cancer oncogenic microRNA superfamily anchored by a central core seed motif od Hamilton, Mark P., Rajapakshe, Kimal, Hartig, Sean M., Reva, Boris, McLellan, Michael D., Kandoth, Cyriac, Ding, Li, Zack, Travis I., Gunaratne, Preethi H., Wheeler, David A., Coarfa, Cristian, McGuire, Sean E.

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Clinical outcomes and differential effects of PI3K pathway mutation in obese versus non-obese patients with cervical cancer od Grigsby, Perry, Elhammali, Adnan, Ruiz, Fiona, Markovina, Stephanie, McLellan, Michael D., Miller, Christopher A., Chundury, Anupama, Ta, Ngoc-Anh L., Rashmi, Ramachandran, Pfeifer, John D., Fulton, Robert S., DeWees, Todd, Schwarz, Julie K.

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Pan-cancer analysis of somatic mutations across 21 neuroendocrine tumor types od Cao, Yanan, Zhou, Weiwei, Li, Lin, Wang, Jiaqian, Gao, Zhibo, Jiang, Yiran, Jiang, Xiuli, Shan, Aijing, Bailey, Matthew H., Huang, Kuan-lin, Sun, Sam Q., McLellan, Michael D., Niu, Beifang, Wang, Weiqing, Ding, Li, Ning, Guang

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Somatic neurofibromatosis type 1 (NF1) inactivation characterizes NF1-associated pilocytic astrocytoma od Gutmann, David H., McLellan, Michael D., Hussain, Ibrahim, Wallis, John W., Fulton, Lucinda L., Fulton, Robert S., Magrini, Vincent, Demeter, Ryan, Wylie, Todd, Kandoth, Cyriac, Leonard, Jeffrey R., Guha, Abhijit, Miller, Christopher A., Ding, Li, Mardis, Elaine R.

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Novel MEK1 Mutation Identified by Mutational Analysis of Epidermal Growth Factor Receptor Signaling Pathway Genes in Lung Adenocarcinoma od Marks, Jenifer L., Gong, Yixuan, Chitale, Dhananjay, Golas, Ben, McLellan, Michael D., Kasai, Yumi, Ding, Li, Mardis, Elaine R., Wilson, Richard K., Solit, David, Levine, Ross, Michel, Kathrin, Thomas, Roman K., Rusch, Valerie W., Ladanyi, Marc, Pao, William

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BreakTrans: uncovering the genomic architecture of gene fusions od Chen, Ken, Navin, Nicholas E, Wang, Yong, Schmidt, Heather K, Wallis, John W, Niu, Beifang, Fan, Xian, Zhao, Hao, McLellan, Michael D, Hoadley, Katherine A, Mardis, Elaine R, Ley, Timothy J, Perou, Charles M, Wilson, Richard K, Ding, Li

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BreakDancer: An algorithm for high resolution mapping of genomic structural variation od Chen, Ken, Wallis, John W., McLellan, Michael D., Larson, David E., Kalicki, Joelle M., Pohl, Craig S., McGrath, Sean D., Wendl, Michael C., Zhang, Qunyuan, Locke, Devin P., Shi, Xiaoqi, Fulton, Robert S., Ley, Timothy J., Wilson, Richard K., Ding, Li, Mardis, Elaine R.

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Protein structure guided discovery of functional mutations across 19 cancer types od Niu, Beifang, Scott, Adam D., Sengupta, Sohini, Bailey, Matthew H., Batra, Prag, Ning, Jie, Wyczalkowski, Matthew A., Liang, Wen-Wei, Zhang, Qunyuan, McLellan, Michael D., Sun, Sam Q., Tripathi, Piyush, Lou, Carolyn, Ye, Kai, Mashl, R. Jay, Wallis, John, Wendl, Michael C., Chen, Feng, Ding, Li

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Mutational Analysis of EGFR and Related Signaling Pathway Genes in Lung Adenocarcinomas Identifies a Novel Somatic Kinase Domain Mutation in FGFR4 od Marks, Jenifer L., McLellan, Michael D., Zakowski, Maureen F., Lash, Alex E., Kasai, Yumi, Broderick, Stephen, Sarkaria, Inderpal S., Pham, DuyKhanh, Singh, Bhuvanesh, Miner, Tracie L., Fewell, Ginger A., Fulton, Lucinda L., Mardis, Elaine R., Wilson, Richard K., Kris, Mark G., Rusch, Valerie W., Varmus, Harold, Pao, William

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Systematic Discovery of Complex Indels in Human Cancers od Ye, Kai, Wang, Jiayin, Jayasinghe, Reyka, Lameijer, Eric-Wubbo, McMichael, Joshua F., Ning, Jie, McLellan, Michael D., Xie, Mingchao, Cao, Song, Yellapantula, Venkata, Huang, Kuan-lin, Scott, Adam, Foltz, Steven, Niu, Beifang, Johnson, Kimberly J., Moed, Matthijs, Slagboom, P. Eline, Chen, Feng, Wendl, Michael C., Ding, Li

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Mutational landscape and significance across 12 major cancer types od Kandoth, Cyriac, McLellan, Michael D., Vandin, Fabio, Ye, Kai, Niu, Beifang, Lu, Charles, Xie, Mingchao, Zhang, Qunyuan, McMichael, Joshua F., Wyczalkowski, Matthew A., Leiserson, Mark D. M., Miller, Christopher A., Welch, John S., Walter, Matthew J., Wendl, Michael C., Ley, Timothy J., Wilson, Richard K., Raphael, Benjamin J., Ding, Li

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