Search Results - Matthew Loose

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  1. 1
    Whale watching with BulkVis: A graphical viewer for Oxford Nanopore bulk fast5 files

    Whale watching with BulkVis: A graphical viewer for Oxford Nanopore bulk fast5 files by Alexander Payne, Nadine Holmes, Vardhman K. Rakyan, Matthew Loose

    Published 2018
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  2. 2
    BulkVis: a graphical viewer for Oxford nanopore bulk FAST5 files

    BulkVis: a graphical viewer for Oxford nanopore bulk FAST5 files by Alexander Payne, Nadine Holmes, Vardhman K. Rakyan, Matthew Loose

    Published 2018
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  3. 3
    Nanopore adaptive sequencing for mixed samples, whole exome capture and targeted panels

    Nanopore adaptive sequencing for mixed samples, whole exome capture and targeted panels by Alexander Payne, Nadine Holmes, Thomas B. Clarke, Rory Munro, Johnny Debebe, Matthew Loose

    Published 2020
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  4. 4
    Readfish enables targeted nanopore sequencing of gigabase-sized genomes

    Readfish enables targeted nanopore sequencing of gigabase-sized genomes by Alexander Payne, Nadine Holmes, Thomas B. Clarke, Rory Munro, Johnny Debebe, Matthew Loose

    Published 2020
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  5. 5
    minoTour, real-time monitoring and analysis for nanopore sequencers

    minoTour, real-time monitoring and analysis for nanopore sequencers by Rory Munro, Roberto Santos, Alexander Payne, Teri Forey, Solomon Osei, Nadine Holmes, Matthew Loose

    Published 2021
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  6. 6
    5-hydroxymethyl-cytosine enrichment of non-committed cells is not a universal feature of vertebrate development

    5-hydroxymethyl-cytosine enrichment of non-committed cells is not a universal feature of vertebrate development by Rimple D. Almeida, Matthew Loose, Virginie Sottile, Elena Matsa, Chris Denning, Lorraine Young, Andrew D. Johnson, Martin Gering, Alexey Ruzov

    Published 2012
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  7. 7
    Stochastic specification of primordial germ cells from mesoderm precursors in axolotl embryos

    Stochastic specification of primordial germ cells from mesoderm precursors in axolotl embryos by Jodie Chatfield, Marie-Anne O'Reilly, Rosemary F. Bachvarova, Zoltán Ferjentsik, Catherine Redwood, Maggie Walmsley, Roger Patient, Matthew Loose, Andrew D. Johnson

    Published 2014
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  8. 8
    Pluripotency and X chromosome dynamics revealed in pig pre-gastrulating embryos by single cell analysis

    Pluripotency and X chromosome dynamics revealed in pig pre-gastrulating embryos by single cell analysis by Priscila Ramos‐Ibeas, Fei Sang, Qifan Zhu, Walfred W. C. Tang, Sarah Withey, Doris Klisch, Liam Wood, Matthew Loose, M. Azim Surani, Ramiro Alberio

    Published 2019
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  9. 9
    Impact of whole-genome duplications on structural variant evolution in Cochlearia

    Impact of whole-genome duplications on structural variant evolution in Cochlearia by Tuomas Hämälä, Chris Moore, Laura Cowan, Matthew Carlile, David Gopaulchan, Marie Kristine Brandrud, Siri Birkeland, Matthew Loose, Filip Kolář, Мarcus A. Koch, Levi Yant

    Published 2024
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  10. 10
    A framework for real-time monitoring, analysis and adaptive sampling of viral amplicon nanopore sequencing

    A framework for real-time monitoring, analysis and adaptive sampling of viral amplicon nanopore sequencing by Rory Munro, Nadine Holmes, Christopher Moore, Matthew Carlile, Alexander Payne, John R. Tyson, Tom Williams, Christopher Alder, Luke B. Snell, Gaia Nebbia, Roberto Santos, Matthew Loose

    Published 2023
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  11. 11
    Examining diabetic heel ulcers through an ecological lens: microbial community dynamics associated with healing and infection

    Examining diabetic heel ulcers through an ecological lens: microbial community dynamics associated with healing and infection by Tim J. Sloan, James Turton, Jess Tyson, Alison Musgrove, Vicki M. Fleming, Michelle M. Lister, Matthew Loose, R. Elizabeth Sockett, Mathew Diggle, Frances L. Game, William Jeffcoate

    Published 2019
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  12. 12
    A single-cell atlas of pig gastrulation as a resource for comparative embryology

    A single-cell atlas of pig gastrulation as a resource for comparative embryology by Luke Simpson, A. Strange, Doris Klisch, Sophie Kraunsoe, Takuya Azami, Daniel E. Goszczynski, Triet Le Minh, Benjamín Planells, Nadine Holmes, Fei Sang, Sonal Henson, Matthew Loose, Jennifer Nichols, Ramiro Alberio

    Published 2024
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  13. 13
    Specification and epigenomic resetting of the pig germline exhibit conservation with the human lineage

    Specification and epigenomic resetting of the pig germline exhibit conservation with the human lineage by Qifan Zhu, Fei Sang, Sarah Withey, Walfred W. C. Tang, Sabine Dietmann, Doris Klisch, Priscila Ramos‐Ibeas, Haixin Zhang, Cristina E. Requena, Petra Hájková, Matthew Loose, M. Azim Surani, Ramiro Alberio

    Published 2021
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  14. 14
    The Impact of Real-Time Whole-Genome Sequencing in Controlling Healthcare-Associated SARS-CoV-2 Outbreaks

    The Impact of Real-Time Whole-Genome Sequencing in Controlling Healthcare-Associated SARS-CoV-2 Outbreaks by Rodric V Francis, Harriet Billam, Mitch Clarke, Carl Yates, Theocharis Tsoleridis, Louise Berry, N. Mahida, William L. Irving, Chris Moore, Nadine Holmes, Jonathan K. Ball, Matthew Loose, C. Patrick McClure

    Published 2021
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  15. 15
    Transient Accumulation of 5-Carboxylcytosine Indicates Involvement of Active Demethylation in Lineage Specification of Neural Stem Cells

    Transient Accumulation of 5-Carboxylcytosine Indicates Involvement of Active Demethylation in Lineage Specification of Neural Stem Cells by Lee M. Wheldon, Abdulkadir Abakir, Zoltán Ferjentsik, Tatiana Dudnakova, Stephanie Strohbuecker, Denise Christie, Nan Dai, Shengxi Guan, Jeremy M. Foster, Ivan R. Corrêa, Matthew Loose, James E. Dixon, Virginie Sottile, Andrew D. Johnson, Alexey Ruzov

    Published 2014
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  16. 16
    MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.0 chemistry

    MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.0 chemistry by Miten Jain, John R. Tyson, Matthew Loose, Camilla L. C. Ip, David Eccles, Justin O’Grady, Sunir Malla, Richard M. Leggett, Ola Wallerman, Hans J. Jansen, Vadim Zalunin, Ewan Birney, Bonnie L. Brown, Terrance P. Snutch, Hugh E. Olsen

    Published 2017
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  17. 17
    Same-Day Diagnostic and Surveillance Data for Tuberculosis via Whole-Genome Sequencing of Direct Respiratory Samples

    Same-Day Diagnostic and Surveillance Data for Tuberculosis via Whole-Genome Sequencing of Direct Respiratory Samples by Antonina A. Votintseva, Phelim Bradley, Louise Pankhurst, Carlos del Ojo Elías, Matthew Loose, Kayzad Nilgiriwala, Anirvan Chatterjee, E. Grace Smith, Nicholas D. Sanderson, Timothy M. Walker, Marcus Morgan, David Wyllie, Timothy M. Walker, Tim Peto, Derrick W. Crook, Zamin Iqbal

    Published 2017
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  18. 18
    Genetic variation at mouse and human ribosomal DNA influences associated epigenetic states

    Genetic variation at mouse and human ribosomal DNA influences associated epigenetic states by Francisco Rodríguez-Algarra, Robert A. Seaborne, Amy F. Danson, Selin Yildizoglu, Harunori Yoshikawa, Pui Pik Law, Zakaryya Ahmad, Victoria A. Maudsley, Ama Brew, Nadine Holmes, Mateus Ochôa, Alan Hodgkinson, Sarah J. Marzi, Madapura M. Pradeepa, Matthew Loose, Michelle L. Holland, Vardhman K. Rakyan

    Published 2022
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  19. 19
    Nanopore sequencing and assembly of a human genome with ultra-long reads

    Nanopore sequencing and assembly of a human genome with ultra-long reads by Miten Jain, Sergey Koren, Josh Quick, AC Rand, TA Sasani, JR Tyson, Andrew D. Beggs, AT Dilthey, IT Fiddes, Sudhakar Malla, Hannah Marriott, KH Miga, Tom Nieto, Justin O’Grady, HE Olsen, BS Pedersen, Arang Rhie, Hollian Richardson, AR Quinlan, TP Snutch, Louise Tee, Benedict Paten, AM Phillippy, JT Simpson, Nicholas J. Loman, Matthew Loose

    Published 2017
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  20. 20
    Nanopore native RNA sequencing of a human poly(A) transcriptome

    Nanopore native RNA sequencing of a human poly(A) transcriptome by Rachael E. Workman, Alison D. Tang, Paul S. Tang, Miten Jain, John R. Tyson, Philip C. Zuzarte, Timothy Gilpatrick, Roham Razaghi, Joshua Quick, Norah Sadowski, Nadine Holmes, Jaqueline Góes de Jesus, Karen L. Jones, Terrance P. Snutch, Nicholas J. Loman, Benedict Paten, Matthew Loose, Jared T. Simpson, Hugh E. Olsen, Angela N. Brooks, Mark Akeson, Winston Timp

    Published 2018
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