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  1. 1
    Cracking the black box of deep sequence-based protein–protein interaction prediction

    Cracking the black box of deep sequence-based protein–protein interaction prediction 由 Judith Bernett, David B. Blumenthal, Markus List

    出版 2024
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  2. 2
    DeepBlue epigenomic data server: programmatic data retrieval and analysis of epigenome region sets

    DeepBlue epigenomic data server: programmatic data retrieval and analysis of epigenome region sets 由 Felipe Albrecht, Markus List, Christoph Bock, Thomas Lengauer

    出版 2016
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  3. 3
    Large-scale inference of competing endogenous RNA networks with sparse partial correlation

    Large-scale inference of competing endogenous RNA networks with sparse partial correlation 由 Markus List, Azim Dehghani Amirabad, Dennis Kostka, Marcel H. Schulz

    出版 2019
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  4. 4
    Network-based approaches for modeling disease regulation and progression

    Network-based approaches for modeling disease regulation and progression 由 Gihanna Galindez, Sepideh Sadegh, Jan Baumbach, Tim Kacprowski, Markus List

    出版 2022
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  5. 5
    De novo pathway-based biomarker identification

    De novo pathway-based biomarker identification 由 Nicolás Alcaraz, Markus List, Richa Batra, Fabio Vandin, Henrik J. Ditzel, Jan Baumbach

    出版 2017
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  6. 6
    EpiRegio: analysis and retrieval of regulatory elements linked to genes

    EpiRegio: analysis and retrieval of regulatory elements linked to genes 由 Nina Baumgarten, Dennis Hecker, Sivarajan Karunanithi, Florian Schmidt, Markus List, Marcel H. Schulz

    出版 2020
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  7. 7
    KeyPathwayMinerWeb: online multi-omics network enrichment

    KeyPathwayMinerWeb: online multi-omics network enrichment 由 Markus List, Nicolás Alcaraz, Martin Dissing-Hansen, Henrik J. Ditzel, Jan Mollenhauer, Jan Baumbach

    出版 2016
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  8. 8
    Classification of Breast Cancer Subtypes by combining Gene Expression and DNA Methylation Data

    Classification of Breast Cancer Subtypes by combining Gene Expression and DNA Methylation Data 由 Markus List, Anne-Christin Hauschild, Qihua Tan, Torben A. Kruse, Jan Baumbach, Richa Batra

    出版 2014
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  9. 9
    Network analysis methods for studying microbial communities: A mini review

    Network analysis methods for studying microbial communities: A mini review 由 Monica Steffi Matchado, Michael Lauber, Sandra Reitmeier, Tim Kacprowski, Jan Baumbach, Dirk Haller, Markus List

    出版 2021
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  10. 10
    Quantitative comparison of within-sample heterogeneity scores for DNA methylation data

    Quantitative comparison of within-sample heterogeneity scores for DNA methylation data 由 Michael Scherer, Almut Nebel, André Franke, Jörn Walter, Thomas Lengauer, Christoph Bock, Fabian Müller, Markus List

    出版 2020
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  11. 11
    DIGGER: exploring the functional role of alternative splicing in protein interactions

    DIGGER: exploring the functional role of alternative splicing in protein interactions 由 Zakaria Louadi, Kevin Yuan, Alexander Greß, Olga Tsoy, Olga V. Kalinina, Jan Baumbach, Tim Kacprowski, Markus List

    出版 2020
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  12. 12
    On the limits of 16S rRNA gene-based metagenome prediction and functional profiling

    On the limits of 16S rRNA gene-based metagenome prediction and functional profiling 由 Monica Steffi Matchado, Malte Rühlemann, Sandra Reitmeier, Tim Kacprowski, Fabian Frost, Dirk Haller, Jan Baumbach, Markus List

    出版 2024
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  13. 13
    On the performance of de novo pathway enrichment

    On the performance of de novo pathway enrichment 由 Richa Batra, Nicolás Alcaraz, Kevin Gitzhofer, Josch K. Pauling, Henrik J. Ditzel, Marc Hellmuth, Jan Baumbach, Markus List

    出版 2017
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  14. 14
    Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology

    Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology 由 Gregor Sturm, Francesca Finotello, Florent Petitprez, Jitao David Zhang, Jan Baumbach, Wolf H. Fridman, Markus List, Tatsiana Aneichyk

    出版 2019
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  15. 15
    Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing

    Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing 由 Isabel Abellan-Schneyder, Monica Steffi Matchado, Sandra Reitmeier, Alina Sommer, Zeno Sewald, Jan Baumbach, Markus List, Klaus Neuhaus

    出版 2021
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  16. 16
    On the Consistency between Gene Expression and the Gene Regulatory Network of <i>Corynebacterium glutamicum</i>

    On the Consistency between Gene Expression and the Gene Regulatory Network of <i>Corynebacterium glutamicum</i> 由 Doglas Parise, Mariana Teixeira Dornelles Parise, Evans Kataka, Rodrigo Bentes Kato, Markus List, Andreas Tauch, Vasco Azevedo, Jan Baumbach

    出版 2021
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  17. 17
    spongEffects: ceRNA modules offer patient-specific insights into the miRNA regulatory landscape

    spongEffects: ceRNA modules offer patient-specific insights into the miRNA regulatory landscape 由 Fabio Boniolo, Markus Hoffmann, Norman Roggendorf, Bahar Tercan, Jan Baumbach, Mauro A. A. Castro, A. Gordon Robertson, Dieter Saur, Markus List

    出版 2022
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  18. 18
    spongEffects: ceRNA modules offer patient-specific insights into the miRNA regulatory landscape

    spongEffects: ceRNA modules offer patient-specific insights into the miRNA regulatory landscape 由 Fabio Boniolo, Markus Hoffmann, Norman Roggendorf, Bahar Tercan, Jan Baumbach, Mauro A. A. Castro, A Gordon Robertson, Dieter Saur, Markus List

    出版 2023
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  19. 19
    PTPN2 Deficiency Enhances Programmed T Cell Expansion and Survival Capacity of Activated T Cells

    PTPN2 Deficiency Enhances Programmed T Cell Expansion and Survival Capacity of Activated T Cells 由 Markus Flosbach, Susanne Oberle, Stefanie Scherer, Jana Zecha, Madlaina von Hoesslin, Florian Wiede, Vijaykumar Chennupati, Jolie G. Cullen, Markus List, Josch K. Pauling, Jan Baumbach, Bernhard Küster, Tony Tiganis, Dietmar Zehn

    出版 2020
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  20. 20
    sPLINK: a hybrid federated tool as a robust alternative to meta-analysis in genome-wide association studies

    sPLINK: a hybrid federated tool as a robust alternative to meta-analysis in genome-wide association studies 由 Reza Nasirigerdeh, Reihaneh Torkzadehmahani, Julian Matschinske, Tobias Frisch, Markus List, Julian Späth, Stefan Weiß, Uwe Völker, Esa Pitkänen, Dominik Heider, Nina K. Wenke, Georgios Kaissis, Daniel Rueckert, Tim Kacprowski, Jan Baumbach

    出版 2022
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