檢索結果 - Mark Novotny

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  1. 1
    Cell type discovery using single-cell transcriptomics: implications for ontological representation

    Cell type discovery using single-cell transcriptomics: implications for ontological representation 由 Brian D. Aevermann, Mark Novotny, Trygve E. Bakken, Jeremy A. Miller, Alexander D. Diehl, David Osumi-Sutherland, Roger S. Lasken, Ed S. Lein, Richard H. Scheuermann

    出版 2018
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  2. 2
    Contemporary Circulating Enterovirus D68 Strains Have Acquired the Capacity for Viral Entry and Replication in Human Neuronal Cells

    Contemporary Circulating Enterovirus D68 Strains Have Acquired the Capacity for Viral Entry and Replication in Human Neuronal Cells 由 David Brown, Alison M. Hixon, Lauren M. Oldfield, Yun Zhang, Mark Novotny, Wei Wang, Suman R. Das, Reed S. Shabman, Kenneth L. Tyler, Richard H. Scheuermann

    出版 2018
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  3. 3
    A machine learning method for the discovery of minimum marker gene combinations for cell type identification from single-cell RNA sequencing

    A machine learning method for the discovery of minimum marker gene combinations for cell type identification from single-cell RNA sequencing 由 Brian D. Aevermann, Yun Zhang, Mark Novotny, Mohamed Keshk, Trygve E. Bakken, Jeremy A. Miller, Rebecca D. Hodge, Boudewijn P. F. Lelieveldt, Ed S. Lein, Richard H. Scheuermann

    出版 2021
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  4. 4
    Simultaneous deletion of the methylcytosine oxidases Tet1 and Tet3 increases transcriptome variability in early embryogenesis

    Simultaneous deletion of the methylcytosine oxidases Tet1 and Tet3 increases transcriptome variability in early embryogenesis 由 Jinsuk Kang, Matthias Lienhard, William A. Pastor, Ashu Chawla, Mark Novotny, Ageliki Tsagaratou, Roger S. Lasken, Elizabeth C. Thompson, M. Azim Surani, Sergei B. Koralov, Sundeep Kalantry, Lukas Chávez, Anjana Rao

    出版 2015
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  5. 5
    A Whole Blood Molecular Signature for Acute Myocardial Infarction

    A Whole Blood Molecular Signature for Acute Myocardial Infarction 由 Evan D. Muse, Eric R. Kramer, Haiying Wang, Paddy Barrett, Fereshteh Parviz, Mark Novotny, Roger S. Lasken, T. Jatkoe, Glenn Oliveira, Hongfan Peng, Jerry Lu, Mark C. Connelly, Kurt Schilling, Chandra Rao, Ali Torkamani, Eric J. Topol

    出版 2017
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  6. 6
    Efficient de novo assembly of single-cell bacterial genomes from short-read data sets

    Efficient de novo assembly of single-cell bacterial genomes from short-read data sets 由 Hamidreza Chitsaz, Joyclyn Yee-Greenbaum, Glenn Tesler, Mary‐Jane Lombardo, Christopher L. Dupont, Jonathan H. Badger, Mark Novotny, Douglas B. Rusch, Louise Fraser, Niall Gormley, Ole Schulz-Trieglaff, Geoffrey Smith, Dirk J. Evers, Pavel A. Pevzner, Roger S. Lasken

    出版 2011
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  7. 7
    Cell type discovery and representation in the era of high-content single cell phenotyping

    Cell type discovery and representation in the era of high-content single cell phenotyping 由 Trygve E. Bakken, Lindsay G. Cowell, Brian D. Aevermann, Mark Novotny, Rebecca D. Hodge, Jeremy A. Miller, Alexandra Lee, Ivan Chang, Jamison McCorrison, Bali Pulendran, Qian Yu, Nicholas J. Schork, Roger S. Lasken, Ed S. Lein, Richard H. Scheuermann

    出版 2017
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  8. 8
    Author Correction: L1-associated genomic regions are deleted in somatic cells of the healthy human brain

    Author Correction: L1-associated genomic regions are deleted in somatic cells of the healthy human brain 由 Jennifer A. Erwin, Apuã C.M. Paquola, Tatjana Singer, Iryna S. Gallina, Mark Novotny, Carolina Quayle, Tracy A. Bedrosian, Francisco I A Alves, Cheyenne R Butcher, Joseph R. Herdy, Anindita Sarkar, Roger S. Lasken, Alysson R. Muotri, Fred H. Gage

    出版 2018
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  9. 9
    RNA-sequencing from single nuclei

    RNA-sequencing from single nuclei 由 Rashel V. Grindberg, Joyclyn Yee-Greenbaum, Michael J. McConnell, Mark Novotny, A. O'Shaughnessy, Georgina M. Lambert, Marcos J. Araúzo‐Bravo, Jun Lee, Max Fishman, Gillian E. Robbins, Xiaoying Lin, Pratap Venepally, Jonathan H. Badger, David W. Galbraith, Fred H. Gage, Roger S. Lasken

    出版 2013
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  10. 10
    Single-Cell Transcriptomes Distinguish Stem Cell State Changes and Lineage Specification Programs in Early Mammary Gland Development

    Single-Cell Transcriptomes Distinguish Stem Cell State Changes and Lineage Specification Programs in Early Mammary Gland Development 由 Rajshekhar R. Giraddi, Chi-Yeh Chung, Richard E. Heinz, Ozlen Balcioglu, Mark Novotny, Christy L. Trejo, Christopher Dravis, Berhane M. Hagos, Elnaz Mirzaei Mehrabad, Luo Wei Rodewald, Jae Yeon Hwang, Cheng Fan, Roger S. Lasken, Katherine E. Varley, Charles M. Perou, Geoffrey M. Wahl, Benjamin T. Spike

    出版 2018
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  11. 11
    Sequence analysis of a complete 1.66 Mb Prochlorococcus marinus MED4 genome cloned in yeast

    Sequence analysis of a complete 1.66 Mb Prochlorococcus marinus MED4 genome cloned in yeast 由 Christian Tagwerker, Christopher L. Dupont, Bogumil J. Karas, Li Ma, Ray-Yuan Chuang, Gwynedd A. Benders, Adi Ramon, Mark Novotny, Michael Montague, Pratap Venepally, Daniel Brami, Ariel Schwartz, Cynthia Andrews‐Pfannkoch, Daniel G. Gibson, John I. Glass, Hamilton O. Smith, J. Craig Venter, Clyde A. Hutchison

    出版 2012
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  12. 12
    Nuclear RNA-seq of single neurons reveals molecular signatures of activation

    Nuclear RNA-seq of single neurons reveals molecular signatures of activation 由 Benjamin Lacar, Sara B. Linker, Baptiste N. Jaeger, Suguna Rani Krishnaswami, Jerika J. Barron, Martijn J. E. Kelder, Sarah Parylak, Apuã C.M. Paquola, Pratap Venepally, Mark Novotny, Carolyn O’Connor, Conor Fitzpatrick, Jennifer A. Erwin, Jonathan Y. Hsu, David Husband, Michael J. McConnell, Roger S. Lasken, Fred H. Gage

    出版 2016
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  13. 13
    Genome of the pathogen <i>Porphyromonas gingivalis</i> recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform

    Genome of the pathogen <i>Porphyromonas gingivalis</i> recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform 由 Jeffrey S. McLean, Mary‐Jane Lombardo, Michael G. Ziegler, Mark Novotny, Joyclyn Yee-Greenbaum, Jonathan H. Badger, Glenn Tesler, Sergey Nurk, Valery M. Lesin, Daniel Brami, Adam P. Hall, Anna Edlund, Lisa Zeigler Allen, Scott Durkin, Sharon L. Reed, Francesca J. Torriani, Kenneth H. Nealson, Pavel A. Pevzner, Robert Friedman, J. Craig Venter, Roger S. Lasken

    出版 2013
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  14. 14
    Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome

    Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome 由 Michael S. Fitzsimons, Mark Novotny, Chien‐Chi Lo, Armand E. K. Dichosa, Joyclyn Yee-Greenbaum, Jeremy P. Snook, Wei Gu, Olga Chertkov, Karen W. Davenport, Kim McMurry, Krista G. Reitenga, Ashlynn R. Daughton, Jian He, Shannon L. Johnson, Cheryl D. Gleasner, Patti L. Wills, B. Parson-Quintana, Patrick Chain, John C. Detter, Roger S. Lasken, Cliff Han

    出版 2013
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  15. 15
    Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons

    Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons 由 Suguna Rani Krishnaswami, Rashel V. Grindberg, Mark Novotny, Pratap Venepally, Benjamin Lacar, Kunal Bhutani, Sara B. Linker, Son Pham, Jennifer A. Erwin, Jeremy A. Miller, Rebecca D. Hodge, James K. McCarthy, Martijn J. E. Kelder, Jamison McCorrison, Brian D. Aevermann, Francisco Díez‐Fuertes, Richard H. Scheuermann, Jun Lee, Ed S. Lein, Nicholas J. Schork, Michael J. McConnell, Fred H. Gage, Roger S. Lasken

    出版 2016
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  16. 16
    Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons

    Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons 由 Rebecca D. Hodge, Jeremy A. Miller, Mark Novotny, Brian Kalmbach, Jonathan T. Ting, Trygve E. Bakken, Brian D. Aevermann, Eliza Barkan, Madeline L. Berkowitz-Cerasano, Charles Cobbs, Francisco Díez‐Fuertes, Song‐Lin Ding, Jamison McCorrison, Nicholas J. Schork, Soraya I. Shehata, Kimberly A. Smith, Susan M. Sunkin, Danny N. Tran, Pratap Venepally, Anna Marie Yanny, Frank J. Steemers, John W. Phillips, Amy Bernard, Christof Koch, Roger S. Lasken, Richard H. Scheuermann, Ed S. Lein

    出版 2020
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  17. 17
    A niche-dependent myeloid transcriptome signature defines dormant myeloma cells

    A niche-dependent myeloid transcriptome signature defines dormant myeloma cells 由 Weng Hua Khoo, Guy Ledergor, Assaf Weiner, Daniel Roden, Rachael Terry, Michelle M. McDonald, Ryan C. Chai, Kim De Veirman, Katie L. Owen, Khatora S. Opperman, Kate Vandyke, Justine R. Clark, Anja Seckinger, Nataša Kovačić, Akira Nguyen, Sindhu T. Mohanty, Jessica A. Pettitt, Ya Xiao, Alexander P. Corr, Christine Seeliger, Mark Novotny, Roger S. Lasken, Tuan V. Nguyen, Babatunde O. Oyajobi, Dana T. Aftab, Alexander Swarbrick, Belinda S. Parker, D. Hewett, Dirk Hose, Karin Vanderkerken, Andrew C.W. Zannettino, Ido Amit, Tri Giang Phan, Peter I. Croucher

    出版 2019
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  18. 18
    Transcriptomic and morphophysiological evidence for a specialized human cortical GABAergic cell type

    Transcriptomic and morphophysiological evidence for a specialized human cortical GABAergic cell type 由 Eszter Boldog, Trygve E. Bakken, Rebecca D. Hodge, Mark Novotny, Brian D. Aevermann, Judith Baka, Sándor Bordé, Jennie Close, Francisco Díez‐Fuertes, Song‐Lin Ding, Nóra Faragó, Ágnes K. Kocsis, Balázs Kovács, Zoe Maltzer, Jamison McCorrison, Jeremy A. Miller, Gábor Molnár, Gáspár Oláh, Attila Ozsvár, Márton Rózsa, Soraya I. Shehata, Kimberly A. Smith, Susan M. Sunkin, Danny N. Tran, Pratap Venepally, Abigail Wall, László G. Puskás, Pál Barzó, Frank J. Steemers, Nicholas J. Schork, Richard H. Scheuermann, Roger S. Lasken, Ed S. Lein, Gábor Tamás

    出版 2018
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  19. 19
    Integrated Single-Cell Atlases Reveal an Oral SARS-CoV-2 Infection and Transmission Axis

    Integrated Single-Cell Atlases Reveal an Oral SARS-CoV-2 Infection and Transmission Axis 由 Ni Huang, Paola Pérez, Takafumi Kato, Yu Mikami, Kenichi Okuda, Rodney C. Gilmore, Cecilia Domínguez Conde, Billel Gasmi, Sydney Stein, Margaret Beach, Eileen Pelayo, José O. Maldonado, Bernard A. P. Lafont, Ricardo Padilla, Valerie A. Murrah, Robert Maile, W. George Lovell, Shannon M. Wallet, Natalie M. Bowman, Suzanne L. Meinig, Matthew C. Wolfgang, Saibyasachi N. Choudhury, Mark Novotny, Brian D. Aevermann, Richard H. Scheuermann, Gabrielle Cannon, Carlton Anderson, Julie T. Marchesan, Mandy Bush, Marcelo Freire, Adam J. Kimple, Daniel Herr, Joseph Rabin, Alison Grazioli, Benjamin N. French, Thomas Pranzatelli, John A. Chiorini, David E. Kleiner, Stefania Pittaluga, Stephen M. Hewitt, Peter D. Burbelo, Daniel S. Chertow, Karen M. Frank, Janice Lee, Richard C. Boucher, Sarah A. Teichmann, Blake M. Warner, Kevin M. Byrd

    出版 2020
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  20. 20
    SARS-CoV-2 infection of the oral cavity and saliva

    SARS-CoV-2 infection of the oral cavity and saliva 由 Ni Huang, Paola Pérez, Takafumi Kato, Yu Mikami, Kenichi Okuda, Rodney C. Gilmore, Cecilia Domínguez Conde, Billel Gasmi, Sydney Stein, Margaret Beach, Eileen Pelayo, José O. Maldonado, Bernard A. P. Lafont, Shyh-Ing Jang, Nadia Nasir, Ricardo J. Padilla, Valerie A. Murrah, Robert Maile, William Lovell, Shannon M. Wallet, Natalie M. Bowman, Suzanne L. Meinig, Matthew C. Wolfgang, Saibyasachi N. Choudhury, Mark Novotny, Brian D. Aevermann, Richard H. Scheuermann, Gabrielle Cannon, Carlton W. Anderson, Rhianna E. Lee, Julie T. Marchesan, Mandy Bush, Marcelo Freire, Adam J. Kimple, Daniel Herr, Joseph Rabin, Alison Grazioli, Sanchita Das, Benjamin French, Thomas Pranzatelli, John A. Chiorini, David E. Kleiner, Stefania Pittaluga, Stephen M. Hewitt, Peter D. Burbelo, Daniel S. Chertow, David E. Kleiner, Michelly Sampaio De Melo, Esra Dikoglu, Sabina Desar, Kris Ylaya, Joon‐Yong Chung, Grace Smith, Daniel S. Chertow, Kevin M. Vannella, Marcos J. Ramos-Benítez, Sabrina Ramelli, Shelly Samet, Ashley L. Babyak, Luis Perez Valencia, Mary Richert, Nicole Hays, Madeleine Purcell, Shreya Singireddy, Jocelyn Wu, Joon‐Yong Chung, Amy Borth, Kimberly Bowers, Anne Weichold, Douglas Tran, Ronson J. Madathil, Eric Krause, Daniel Herr, Joseph Rabin, Joseph A. Herrold, Ali Tabatabai, Eric Hochberg, Christopher R. Cornachione, Andrea R. Levine, Michael T. McCurdy, Kapil Saharia, Zack Chancer, Michael Mazzeffi, Justin E. Richards, Stephen M. Hewitt, Yashvir Sangwan, Inês Sequeira, Sarah A. Teichmann, Adam J. Kimple, Karen M. Frank, Janice S. Lee, Richard C. Boucher, Sarah A. Teichmann, Blake M. Warner, Kevin M. Byrd

    出版 2021
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