Resultados da busca - Mark Chaisson

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  1. 1
    Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory

    Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory por Mark Chaisson, Glenn Tesler

    Publicado em 2012
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  2. 2
    lra: A long read aligner for sequences and contigs

    lra: A long read aligner for sequences and contigs por Jingwen Ren, Mark Chaisson

    Publicado em 2021
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  3. 3
    Short read fragment assembly of bacterial genomes

    Short read fragment assembly of bacterial genomes por Mark Chaisson, Pavel A. Pevzner

    Publicado em 2007
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  4. 4
    vamos: variable-number tandem repeats annotation using efficient motif sets

    vamos: variable-number tandem repeats annotation using efficient motif sets por Jingwen Ren, Bida Gu, Mark Chaisson

    Publicado em 2023
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  5. 5
    De novo fragment assembly with short mate-paired reads: Does the read length matter?

    De novo fragment assembly with short mate-paired reads: Does the read length matter? por Mark Chaisson, Dumitru Brinza, Pavel A. Pevzner

    Publicado em 2008
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  6. 6
    Genetic variation and the de novo assembly of human genomes

    Genetic variation and the de novo assembly of human genomes por Mark Chaisson, Richard K. Wilson, Evan E. Eichler

    Publicado em 2015
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  7. 7
    Paired de Bruijn Graphs: A Novel Approach for Incorporating Mate Pair Information into Genome Assemblers

    Paired de Bruijn Graphs: A Novel Approach for Incorporating Mate Pair Information into Genome Assemblers por Paul Medvedev, Son Pham, Mark Chaisson, Glenn Tesler, Pavel A. Pevzner

    Publicado em 2011
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  8. 8
    The motif composition of variable number tandem repeats impacts gene expression

    The motif composition of variable number tandem repeats impacts gene expression por Tsung-Yu Lu, Paulina N. Smaruj, Geoffrey Fudenberg, Nicholas Mancuso, Mark Chaisson

    Publicado em 2023
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  9. 9
    Advances in the discovery and analyses of human tandem repeats

    Advances in the discovery and analyses of human tandem repeats por Mark Chaisson, Arvis Sulovari, Paul N. Valdmanis, Danny E. Miller, Evan E. Eichler

    Publicado em 2023
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  10. 10
    Assembly of long error-prone reads using de Bruijn graphs

    Assembly of long error-prone reads using de Bruijn graphs por Yu Lin, Jeffrey Yuan, Mikhail Kolmogorov, Max W. Shen, Mark Chaisson, Pavel A. Pevzner

    Publicado em 2016
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  11. 11
    STAR: ultrafast universal RNA-seq aligner

    STAR: ultrafast universal RNA-seq aligner por Alexander Dobin, Carrie Davis, Felix Schlesinger, Jörg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, T Gingeras

    Publicado em 2012
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  12. 12
    Profiling variable-number tandem repeat variation across populations using repeat-pangenome graphs

    Profiling variable-number tandem repeat variation across populations using repeat-pangenome graphs por Tsung-Yu Lu, Katherine M. Munson, Alexandra P. Lewis, Qihui Zhu, Luke J. Tallon, Scott E. Devine, Charles Lee, Evan E. Eichler, Mark Chaisson

    Publicado em 2021
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  13. 13
    Reconstructing complex regions of genomes using long-read sequencing technology

    Reconstructing complex regions of genomes using long-read sequencing technology por John Huddleston, Swati Ranade, Maika Malig, Francesca Antonacci, Mark Chaisson, Lawrence Hon, Peter H. Sudmant, Tina Graves, Can Alkan, Megan Y. Dennis, Richard K. Wilson, Stephen W. Turner, Jonas Korlach, Evan E. Eichler

    Publicado em 2014
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  14. 14
    Resolving the complexity of the human genome using single-molecule sequencing

    Resolving the complexity of the human genome using single-molecule sequencing por Mark Chaisson, John Huddleston, Megan Y. Dennis, Peter H. Sudmant, Maika Malig, Fereydoun Hormozdiari, Francesca Antonacci, Urvashi Surti, Richard Sandstrom, Matthew Boitano, Jane M. Landolin, J Stamatoyannopoulos, Michael W. Hunkapiller, Jonas Korlach, Evan E. Eichler

    Publicado em 2014
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  15. 15
    Discovery and genotyping of structural variation from long-read haploid genome sequence data

    Discovery and genotyping of structural variation from long-read haploid genome sequence data por John Huddleston, Mark Chaisson, Karyn Meltz Steinberg, Wes Warren, Kendra Hoekzema, David Gordon, Tina A. Graves-Lindsay, Katherine M. Munson, Zev Kronenberg, Laura Vives, Paul Peluso, Matthew Boitano, Chen-Shin Chin, Jonas Korlach, Richard K. Wilson, Evan E. Eichler

    Publicado em 2016
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  16. 16
    Long-read sequence assembly of the gorilla genome

    Long-read sequence assembly of the gorilla genome por David Gordon, John Huddleston, Mark Chaisson, C. Hill, Zev Kronenberg, Katherine M. Munson, Maika Malig, Archana N. Raja, Ian T. Fiddes, LaDeana Hillier, Christopher Dunn, Carl Baker, Joel Armstrong, Mark Diekhans, Benedict Paten, Jay Shendure, Richard K. Wilson, David Haussler, Chen-Shan Chin, Evan E. Eichler

    Publicado em 2016
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  17. 17
    Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads

    Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads por David Porubský, Peter Ebert, Peter A. Audano, Mitchell R. Vollger, William T. Harvey, Pierre Marijon, Jana Ebler, Katherine M. Munson, Melanie Sorensen, Arvis Sulovari, Marina Haukness, Maryam Ghareghani, Peter M. Lansdorp, Benedict Paten, Scott E. Devine, Ashley D. Sanders, Charles Lee, Mark Chaisson, Jan O. Korbel, Evan E. Eichler, Tobias Marschall

    Publicado em 2020
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  18. 18
    Expectations and blind spots for structural variation detection from long-read assemblies and short-read genome sequencing technologies

    Expectations and blind spots for structural variation detection from long-read assemblies and short-read genome sequencing technologies por Xuefang Zhao, Ryan L. Collins, Wan‐Ping Lee, Alexandra M. Weber, Yukyung Jun, Qihui Zhu, Ben Weisburd, Yongqing Huang, Peter A. Audano, Harold Wang, Mark Walker, Chelsea Lowther, Jack Fu, Mark Gerstein, Scott E. Devine, Tobias Marschall, Jan O. Korbel, Evan E. Eichler, Mark Chaisson, Charles Lee, Ryan E. Mills, Harrison Brand, Michael E. Talkowski

    Publicado em 2021
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  19. 19
    Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation

    Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation por Mikhail Kolmogorov, Kimberley J. Billingsley, Mira Mastoras, Melissa Meredith, Jean Monlong, Ryan Lorig-Roach, Mobin Asri, Pilar Álvarez Jerez, Laksh Malik, Ramita Dewan, Xylena Reed, Rylee M. Genner, Kensuke Daida, Sairam Behera, Kishwar Shafin, Trevor Pesout, Jeshuwin Prabakaran, P. Carnevali, Jianzhi Yang, Arang Rhie, Sonja W. Scholz, Bryan J. Traynor, Karen H. Miga, Miten Jain, Winston Timp, Adam M. Phillippy, Mark Chaisson, Fritz J. Sedlazeck, Cornelis Blauwendraat, Benedict Paten

    Publicado em 2023
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  20. 20
    Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation

    Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation por Mikhail Kolmogorov, Kimberley J. Billingsley, Mira Mastoras, Melissa Meredith, Jean Monlong, Ryan Lorig-Roach, Mobin Asri, Pilar Álvarez Jerez, Laksh Malik, Ramita Dewan, Xylena Reed, Rylee M. Genner, Kensuke Daida, Sairam Behera, Kishwar Shafin, Trevor Pesout, Jeshuwin Prabakaran, P. Carnevali, Jianzhi Yang, Arang Rhie, Sonja W. Scholz, Bryan J. Traynor, Karen H. Miga, Miten Jain, Winston Timp, Adam M. Phillippy, Mark Chaisson, Fritz J. Sedlazeck, Cornelis Blauwendraat, Benedict Paten

    Publicado em 2023
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