Search Results - Marini, Simone

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  1. 1
    KARGA: Multi-platform Toolkit for k-mer-based Antibiotic Resistance Gene Analysis of High-throughput Sequencing Data

    KARGA: Multi-platform Toolkit for k-mer-based Antibiotic Resistance Gene Analysis of High-throughput Sequencing Data by Prosperi, Mattia, Marini, Simone

    Published 2021
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  2. 2
    PaPI: pseudo amino acid composition to score human protein-coding variants

    PaPI: pseudo amino acid composition to score human protein-coding variants by Limongelli, Ivan, Marini, Simone, Bellazzi, Riccardo

    Published 2015
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  3. 3
    Fast and exact quantification of motif occurrences in biological sequences

    Fast and exact quantification of motif occurrences in biological sequences by Prosperi, Mattia, Marini, Simone, Boucher, Christina

    Published 2021
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  4. 4
    A Novel, Unbiased Analysis Approach for Investigating Population Dynamics: A Case Study on Calanus finmarchicus and Its Decline in the North Sea

    A Novel, Unbiased Analysis Approach for Investigating Population Dynamics: A Case Study on Calanus finmarchicus and Its Decline in the North Sea by Papworth, Danny J., Marini, Simone, Conversi, Alessandra

    Published 2016
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  5. 5
    A Snapshot of SARS-CoV-2 Genome Availability up to April 2020 and its Implications: Data Analysis

    A Snapshot of SARS-CoV-2 Genome Availability up to April 2020 and its Implications: Data Analysis by Mavian, Carla, Marini, Simone, Prosperi, Mattia, Salemi, Marco

    Published 2020
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  6. 6
    Correction: A Snapshot of SARS-CoV-2 Genome Availability up to April 2020 and its Implications: Data Analysis

    Correction: A Snapshot of SARS-CoV-2 Genome Availability up to April 2020 and its Implications: Data Analysis by Mavian, Carla, Marini, Simone, Prosperi, Mattia, Salemi, Marco

    Published 2020
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  7. 7
    Authors' Reply to: Errors in Tracing Coronavirus SARS-CoV-2 Transmission Using a Maximum Likelihood Tree. Comment on “A Snapshot of SARS-CoV-2 Genome Availability up to April 2020 and its Implications: Data Analysis”

    Authors' Reply to: Errors in Tracing Coronavirus SARS-CoV-2 Transmission Using a Maximum Likelihood Tree. Comment on “A Snapshot of SARS-CoV-2 Genome Availability up to April 2020... by Mavian, Carla, Marini, Simone, Prosperi, Mattia, Salemi, Marco

    Published 2020
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  8. 8
    “Noisy beets”: impact of phenotyping errors on genomic predictions for binary traits in Beta vulgaris

    “Noisy beets”: impact of phenotyping errors on genomic predictions for binary traits in Beta vulgaris by Biscarini, Filippo, Nazzicari, Nelson, Broccanello, Chiara, Stevanato, Piergiorgio, Marini, Simone

    Published 2016
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  9. 9
    Local and landscape factors affect sunflower pollination in a Mediterranean agroecosystem

    Local and landscape factors affect sunflower pollination in a Mediterranean agroecosystem by M. Bartual, Agustín, Bocci, Gionata, Marini, Simone, Moonen, Anna Camilla

    Published 2018
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  10. 10
    Towards routine employment of computational tools for antimicrobial resistance determination via high-throughput sequencing

    Towards routine employment of computational tools for antimicrobial resistance determination via high-throughput sequencing by Marini, Simone, Mora, Rodrigo A, Boucher, Christina, Robertson Noyes, Noelle, Prosperi, Mattia

    Published 2022
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  11. 11
    Improvement of Dscam homophilic binding affinity throughout Drosophila evolution

    Improvement of Dscam homophilic binding affinity throughout Drosophila evolution by Wang, Guang-Zhong, Marini, Simone, Ma, Xinyun, Yang, Qiang, Zhang, Xuegong, Zhu, Yan

    Published 2014
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  12. 12
    MTGO: PPI Network Analysis Via Topological and Functional Module Identification

    MTGO: PPI Network Analysis Via Topological and Functional Module Identification by Vella, Danila, Marini, Simone, Vitali, Francesca, Di Silvestre, Dario, Mauri, Giancarlo, Bellazzi, Riccardo

    Published 2018
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  13. 13
    MTGO-SC, A Tool to Explore Gene Modules in Single-Cell RNA Sequencing Data

    MTGO-SC, A Tool to Explore Gene Modules in Single-Cell RNA Sequencing Data by Nazzicari, Nelson, Vella, Danila, Coronnello, Claudia, Di Silvestre, Dario, Bellazzi, Riccardo, Marini, Simone

    Published 2019
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  14. 14
    Optimizing viral genome subsampling by genetic diversity and temporal distribution (TARDiS) for phylogenetics

    Optimizing viral genome subsampling by genetic diversity and temporal distribution (TARDiS) for phylogenetics by Marini, Simone, Mavian, Carla, Riva, Alberto, Prosperi, Mattia, Salemi, Marco, Rife Magalis, Brittany

    Published 2021
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  15. 15
    The Role of SwrA, DegU and P(D3) in fla/che Expression in B. subtilis

    The Role of SwrA, DegU and P(D3) in fla/che Expression in B. subtilis by Mordini, Serena, Osera, Cecilia, Marini, Simone, Scavone, Francesco, Bellazzi, Riccardo, Galizzi, Alessandro, Calvio, Cinzia

    Published 2013
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  16. 16
    Looking inside the Ocean: Toward an Autonomous Imaging System for Monitoring Gelatinous Zooplankton

    Looking inside the Ocean: Toward an Autonomous Imaging System for Monitoring Gelatinous Zooplankton by Corgnati, Lorenzo, Marini, Simone, Mazzei, Luca, Ottaviani, Ennio, Aliani, Stefano, Conversi, Alessandra, Griffa, Annalisa

    Published 2016
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  17. 17
    Tracking Fish Abundance by Underwater Image Recognition

    Tracking Fish Abundance by Underwater Image Recognition by Marini, Simone, Fanelli, Emanuela, Sbragaglia, Valerio, Azzurro, Ernesto, Del Rio Fernandez, Joaquin, Aguzzi, Jacopo

    Published 2018
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  18. 18
    Exploring Prediction of Antimicrobial Resistance Based on Protein Solvent Accessibility Variation

    Exploring Prediction of Antimicrobial Resistance Based on Protein Solvent Accessibility Variation by Marini, Simone, Oliva, Marco, Slizovskiy, Ilya B., Noyes, Noelle Robertson, Boucher, Christina, Prosperi, Mattia

    Published 2021
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  19. 19
    Video Image Enhancement and Machine Learning Pipeline for Underwater Animal Detection and Classification at Cabled Observatories

    Video Image Enhancement and Machine Learning Pipeline for Underwater Animal Detection and Classification at Cabled Observatories by Lopez-Vazquez, Vanesa, Lopez-Guede, Jose Manuel, Marini, Simone, Fanelli, Emanuela, Johnsen, Espen, Aguzzi, Jacopo

    Published 2020
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  20. 20
    The Hierarchic Treatment of Marine Ecological Information from Spatial Networks of Benthic Platforms

    The Hierarchic Treatment of Marine Ecological Information from Spatial Networks of Benthic Platforms by Aguzzi, Jacopo, Chatzievangelou, Damianos, Francescangeli, Marco, Marini, Simone, Bonofiglio, Federico, del Rio, Joaquin, Danovaro, Roberto

    Published 2020
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