Ngā hua rapu - Mani, D R

Clustering with position-specific constraints on variance: Applying redescending M-estimators to label-free LC-MS data analysis mā Frühwirth, Rudolf, Mani, D R, Pyne, Saumyadipta

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Statistical characterization of multiple-reaction monitoring mass spectrometry (MRM-MS) assays for quantitative proteomics mā Mani, D R, Abbatiello, Susan E, Carr, Steven A

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Editorial: Proteomics and Its Applications in Cancer mā Thakur, Suman S., Gowda, Harsha, Mani, D. R., Chatterjee, Bhaswati

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Automated Detection of Inaccurate and Imprecise Transitions in Peptide Quantification by Multiple Reaction Monitoring Mass Spectrometry mā Abbatiello, Susan E., Mani, D. R., Keshishian, Hasmik, Carr, Steven A.

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Prediction of high-responding peptides for targeted protein assays by mass spectrometry mā Fusaro, Vincent A, Mani, D R, Mesirov, Jill P, Carr, Steven A

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Transitioning from Targeted to Comprehensive Mass Spectrometry using Genetic Algorithms mā Jaffe, Jacob D., Feeney, Caitlin M., Patel, Jinal, Lu, Xiaodong, Mani, D. R.

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Simplified and Efficient Quantification of Low-abundance Proteins at Very High Multiplex via Targeted Mass Spectrometry mā Burgess, Michael W., Keshishian, Hasmik, Mani, D. R., Gillette, Michael A., Carr, Steven A.

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Quantitative proteomic profiling of the extracellular matrix of pancreatic islets during the angiogenic switch and insulinoma progression mā Naba, Alexandra, Clauser, Karl R., Mani, D. R., Carr, Steven A., Hynes, Richard O.

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PEPPeR: A Platform for Experimental Proteomic Pattern Recognition mā Jaffe, Jacob D., Mani, D. R., Leptos, Kyriacos C., Church, George M., Gillette, Michael A., Carr, Steven A.

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Refined Preparation and Use of Anti-diglycine Remnant (K-ε-GG) Antibody Enables Routine Quantification of 10,000s of Ubiquitination Sites in Single Proteomics Experiments mā Udeshi, Namrata D., Svinkina, Tanya, Mertins, Philipp, Kuhn, Eric, Mani, D. R., Qiao, Jana W., Carr, Steven A.

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Quantification of Cardiovascular Biomarkers in Patient Plasma by Targeted Mass Spectrometry and Stable Isotope Dilution mā Keshishian, Hasmik, Addona, Terri, Burgess, Michael, Mani, D. R., Shi, Xu, Kuhn, Eric, Sabatine, Marc S., Gerszten, Robert E., Carr, Steven A.

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Developing Multiplexed Assays for Troponin I and Interleukin-33 in Plasma by Peptide Immunoaffinity Enrichment and Targeted Mass Spectrometry mā Kuhn, Eric, Addona, Terri, Keshishian, Hasmik, Burgess, Michael, Mani, D.R., Lee, Richard T., Sabatine, Marc S., Gerszten, Robert E., Carr, Steven A.

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Methods for Quantification of in vivo Changes in Protein Ubiquitination following Proteasome and Deubiquitinase Inhibition mā Udeshi, Namrata D., Mani, D. R., Eisenhaure, Thomas, Mertins, Philipp, Jaffe, Jacob D., Clauser, Karl R., Hacohen, Nir, Carr, Steven A.

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Methods, Tools and Current Perspectives in Proteogenomics mā Ruggles, Kelly V., Krug, Karsten, Wang, Xiaojing, Clauser, Karl R., Wang, Jing, Payne, Samuel H., Fenyö, David, Zhang, Bing, Mani, D. R.

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PANOPLY: A cloud-based platform for automated and reproducible proteogenomic data analysis mā Mani, D. R., Maynard, Myranda, Kothadia, Ramani, Krug, Karsten, Christianson, Karen E., Heiman, David, Clauser, Karl R., Birger, Chet, Getz, Gad, Carr, Steven A.

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Proteomic analyses of ECM during pancreatic ductal adenocarcinoma progression reveal different contributions by tumor and stromal cells mā Tian, Chenxi, Clauser, Karl R., Öhlund, Daniel, Rickelt, Steffen, Huang, Ying, Gupta, Mala, Mani, D. R., Carr, Steven A., Tuveson, David A., Hynes, Richard O.

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Integrated proteomic analysis of post-translational modifications by serial enrichment mā Mertins, Philipp, Qiao, Jana W, Patel, Jinal, Udeshi, Namrata D, Clauser, Karl R, Mani, D R, Burgess, Michael W, Gillette, Michael A, Jaffe, Jacob D, Carr, Steven A

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Multiplexed, Quantitative Workflow for Sensitive Biomarker Discovery in Plasma Yields Novel Candidates for Early Myocardial Injury mā Keshishian, Hasmik, Burgess, Michael W., Gillette, Michael A., Mertins, Philipp, Clauser, Karl R., Mani, D. R., Kuhn, Eric W., Farrell, Laurie A., Gerszten, Robert E., Carr, Steven A.

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Identification of apolipoprotein D as a cardioprotective gene using a mouse model of lethal atherosclerotic coronary artery disease mā Tsukamoto, Kosuke, Mani, D. R., Shi, Jianru, Zhang, Songwen, Haagensen, Darrow E., Otsuka, Fumiyuki, Guan, Jian, Smith, Jonathan D., Weng, Wei, Liao, Ronglih, Kolodgie, Frank D., Virmani, Renu, Krieger, Monty

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Streamlined Protocol for Deep Proteomic Profiling of FAC-sorted Cells and Its Application to Freshly Isolated Murine Immune Cells mā Myers, Samuel A., Rhoads, Andrew, Cocco, Alexandra R., Peckner, Ryan, Haber, Adam L., Schweitzer, Lawrence D., Krug, Karsten, Mani, D. R., Clauser, Karl R., Rozenblatt-Rosen, Orit, Hacohen, Nir, Regev, Aviv, Carr, Steven A.

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