Torthaí cuardaigh - Mani, D R

Clustering with position-specific constraints on variance: Applying redescending M-estimators to label-free LC-MS data analysis de réir Frühwirth, Rudolf, Mani, D R, Pyne, Saumyadipta

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Statistical characterization of multiple-reaction monitoring mass spectrometry (MRM-MS) assays for quantitative proteomics de réir Mani, D R, Abbatiello, Susan E, Carr, Steven A

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Editorial: Proteomics and Its Applications in Cancer de réir Thakur, Suman S., Gowda, Harsha, Mani, D. R., Chatterjee, Bhaswati

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Automated Detection of Inaccurate and Imprecise Transitions in Peptide Quantification by Multiple Reaction Monitoring Mass Spectrometry de réir Abbatiello, Susan E., Mani, D. R., Keshishian, Hasmik, Carr, Steven A.

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Prediction of high-responding peptides for targeted protein assays by mass spectrometry de réir Fusaro, Vincent A, Mani, D R, Mesirov, Jill P, Carr, Steven A

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Transitioning from Targeted to Comprehensive Mass Spectrometry using Genetic Algorithms de réir Jaffe, Jacob D., Feeney, Caitlin M., Patel, Jinal, Lu, Xiaodong, Mani, D. R.

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Simplified and Efficient Quantification of Low-abundance Proteins at Very High Multiplex via Targeted Mass Spectrometry de réir Burgess, Michael W., Keshishian, Hasmik, Mani, D. R., Gillette, Michael A., Carr, Steven A.

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Quantitative proteomic profiling of the extracellular matrix of pancreatic islets during the angiogenic switch and insulinoma progression de réir Naba, Alexandra, Clauser, Karl R., Mani, D. R., Carr, Steven A., Hynes, Richard O.

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PEPPeR: A Platform for Experimental Proteomic Pattern Recognition de réir Jaffe, Jacob D., Mani, D. R., Leptos, Kyriacos C., Church, George M., Gillette, Michael A., Carr, Steven A.

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Refined Preparation and Use of Anti-diglycine Remnant (K-ε-GG) Antibody Enables Routine Quantification of 10,000s of Ubiquitination Sites in Single Proteomics Experiments de réir Udeshi, Namrata D., Svinkina, Tanya, Mertins, Philipp, Kuhn, Eric, Mani, D. R., Qiao, Jana W., Carr, Steven A.

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Quantification of Cardiovascular Biomarkers in Patient Plasma by Targeted Mass Spectrometry and Stable Isotope Dilution de réir Keshishian, Hasmik, Addona, Terri, Burgess, Michael, Mani, D. R., Shi, Xu, Kuhn, Eric, Sabatine, Marc S., Gerszten, Robert E., Carr, Steven A.

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Developing Multiplexed Assays for Troponin I and Interleukin-33 in Plasma by Peptide Immunoaffinity Enrichment and Targeted Mass Spectrometry de réir Kuhn, Eric, Addona, Terri, Keshishian, Hasmik, Burgess, Michael, Mani, D.R., Lee, Richard T., Sabatine, Marc S., Gerszten, Robert E., Carr, Steven A.

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Methods for Quantification of in vivo Changes in Protein Ubiquitination following Proteasome and Deubiquitinase Inhibition de réir Udeshi, Namrata D., Mani, D. R., Eisenhaure, Thomas, Mertins, Philipp, Jaffe, Jacob D., Clauser, Karl R., Hacohen, Nir, Carr, Steven A.

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Methods, Tools and Current Perspectives in Proteogenomics de réir Ruggles, Kelly V., Krug, Karsten, Wang, Xiaojing, Clauser, Karl R., Wang, Jing, Payne, Samuel H., Fenyö, David, Zhang, Bing, Mani, D. R.

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PANOPLY: A cloud-based platform for automated and reproducible proteogenomic data analysis de réir Mani, D. R., Maynard, Myranda, Kothadia, Ramani, Krug, Karsten, Christianson, Karen E., Heiman, David, Clauser, Karl R., Birger, Chet, Getz, Gad, Carr, Steven A.

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Proteomic analyses of ECM during pancreatic ductal adenocarcinoma progression reveal different contributions by tumor and stromal cells de réir Tian, Chenxi, Clauser, Karl R., Öhlund, Daniel, Rickelt, Steffen, Huang, Ying, Gupta, Mala, Mani, D. R., Carr, Steven A., Tuveson, David A., Hynes, Richard O.

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Integrated proteomic analysis of post-translational modifications by serial enrichment de réir Mertins, Philipp, Qiao, Jana W, Patel, Jinal, Udeshi, Namrata D, Clauser, Karl R, Mani, D R, Burgess, Michael W, Gillette, Michael A, Jaffe, Jacob D, Carr, Steven A

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Multiplexed, Quantitative Workflow for Sensitive Biomarker Discovery in Plasma Yields Novel Candidates for Early Myocardial Injury de réir Keshishian, Hasmik, Burgess, Michael W., Gillette, Michael A., Mertins, Philipp, Clauser, Karl R., Mani, D. R., Kuhn, Eric W., Farrell, Laurie A., Gerszten, Robert E., Carr, Steven A.

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Identification of apolipoprotein D as a cardioprotective gene using a mouse model of lethal atherosclerotic coronary artery disease de réir Tsukamoto, Kosuke, Mani, D. R., Shi, Jianru, Zhang, Songwen, Haagensen, Darrow E., Otsuka, Fumiyuki, Guan, Jian, Smith, Jonathan D., Weng, Wei, Liao, Ronglih, Kolodgie, Frank D., Virmani, Renu, Krieger, Monty

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Streamlined Protocol for Deep Proteomic Profiling of FAC-sorted Cells and Its Application to Freshly Isolated Murine Immune Cells de réir Myers, Samuel A., Rhoads, Andrew, Cocco, Alexandra R., Peckner, Ryan, Haber, Adam L., Schweitzer, Lawrence D., Krug, Karsten, Mani, D. R., Clauser, Karl R., Rozenblatt-Rosen, Orit, Hacohen, Nir, Regev, Aviv, Carr, Steven A.

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