Search Results - Luo, Shujun

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  1. 1
    Complete RNA-seq analysis of cancer transcriptomes from FFPE samples

    Complete RNA-seq analysis of cancer transcriptomes from FFPE samples by Luo, Shujun, Khrebtukova, Irina, Perou, Chuck, Schroth, Gary P

    Published 2010
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  2. 2
    Meraculous: De Novo Genome Assembly with Short Paired-End Reads

    Meraculous: De Novo Genome Assembly with Short Paired-End Reads by Chapman, Jarrod A., Ho, Isaac, Sunkara, Sirisha, Luo, Shujun, Schroth, Gary P., Rokhsar, Daniel S.

    Published 2011
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  3. 3
    High Resolution Analysis of Parent-of-Origin Allelic Expression in the Mouse Brain

    High Resolution Analysis of Parent-of-Origin Allelic Expression in the Mouse Brain by Gregg, Christopher, Zhang, Jiangwen, Weissbourd, Brandon, Luo, Shujun, Schroth, Gary P., Haig, David, Dulac, Catherine

    Published 2010
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  4. 4
    Noncanonical Compensation of Zygotic X Transcription in Early Drosophila melanogaster Development Revealed through Single-Embryo RNA-Seq

    Noncanonical Compensation of Zygotic X Transcription in Early Drosophila melanogaster Development Revealed through Single-Embryo RNA-Seq by Lott, Susan E., Villalta, Jacqueline E., Schroth, Gary P., Luo, Shujun, Tonkin, Leath A., Eisen, Michael B.

    Published 2011
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  5. 5
    Single-neuron RNA-Seq: technical feasibility and reproducibility

    Single-neuron RNA-Seq: technical feasibility and reproducibility by Qiu, Shenfeng, Luo, Shujun, Evgrafov, Oleg, Li, Robin, Schroth, Gary P., Levitt, Pat, Knowles, James A., Wang, Kai

    Published 2012
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  6. 6
    Erratum: Single-neuron RNA-Seq: technical feasibility and reproducibility

    Erratum: Single-neuron RNA-Seq: technical feasibility and reproducibility by Qiu, Shenfeng, Luo, Shujun, Evgrafov, Oleg, Li, Robin, Schroth, Gary P., Levitt, Pat, Knowles, James A., Wang, Kai

    Published 2013
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  7. 7
    Highly sensitive and specific microRNA expression profiling using BeadArray technology

    Highly sensitive and specific microRNA expression profiling using BeadArray technology by Chen, Jing, Lozach, Jean, Garcia, Eliza Wickham, Barnes, Bret, Luo, Shujun, Mikoulitch, Ivan, Zhou, Lixin, Schroth, Gary, Fan, Jian-Bing

    Published 2008
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  8. 8
    Alternative Isoform Regulation in Human Tissue Transcriptomes

    Alternative Isoform Regulation in Human Tissue Transcriptomes by Wang, Eric T., Sandberg, Rickard, Luo, Shujun, Khrebtukova, Irina, Zhang, Lu, Mayr, Christine, Kingsmore, Stephen F., Schroth, Gary P., Burge, Christopher B.

    Published 2008
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  9. 9
    mRNA-seq with agnostic splice site discovery for nervous system transcriptomics tested in chronic pain

    mRNA-seq with agnostic splice site discovery for nervous system transcriptomics tested in chronic pain by Hammer, Paul, Banck, Michaela S., Amberg, Ronny, Wang, Cheng, Petznick, Gabriele, Luo, Shujun, Khrebtukova, Irina, Schroth, Gary P., Beyerlein, Peter, Beutler, Andreas S.

    Published 2010
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  10. 10
    Direct visualization of DNA affinity landscapes using a high-throughput sequencing instrument

    Direct visualization of DNA affinity landscapes using a high-throughput sequencing instrument by Nutiu, Razvan, Friedman, Robin C., Luo, Shujun, Khrebtukova, Irina, Silva, David, Li, Robin, Zhang, Lu, Schroth, Gary P., Burge, Christopher B.

    Published 2011
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  11. 11
    Duplex-specific nuclease efficiently removes rRNA for prokaryotic RNA-seq

    Duplex-specific nuclease efficiently removes rRNA for prokaryotic RNA-seq by Yi, Hana, Cho, Yong-Joon, Won, Sungho, Lee, Jong-Eun, Jin Yu, Hyung, Kim, Sujin, Schroth, Gary P., Luo, Shujun, Chun, Jongsik

    Published 2011
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  12. 12
    Transcriptome Sequencing, Microarray, and Proteomic Analyses Reveal Cellular and Metabolic Impact of Hepatitis C Virus Infection In Vitro

    Transcriptome Sequencing, Microarray, and Proteomic Analyses Reveal Cellular and Metabolic Impact of Hepatitis C Virus Infection In Vitro by Woodhouse, Stephen D, Narayan, Ramamurthy, Latham, Sally, Lee, Sheena, Antrobus, Robin, Gangadharan, Bevin, Luo, Shujun, Schroth, Gary P, Klenerman, Paul, Zitzmann, Nicole

    Published 2010
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  13. 13
    Multiplexed RNA structure characterization with selective 2′-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)

    Multiplexed RNA structure characterization with selective 2′-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq) by Lucks, Julius B., Mortimer, Stefanie A., Trapnell, Cole, Luo, Shujun, Aviran, Sharon, Schroth, Gary P., Pachter, Lior, Doudna, Jennifer A., Arkin, Adam P.

    Published 2011
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  14. 14
    Modeling and automation of sequencing-based characterization of RNA structure

    Modeling and automation of sequencing-based characterization of RNA structure by Aviran, Sharon, Trapnell, Cole, Lucks, Julius B., Mortimer, Stefanie A., Luo, Shujun, Schroth, Gary P., Doudna, Jennifer A., Arkin, Adam P., Pachter, Lior

    Published 2011
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  15. 15
    LIN28A Modulates Splicing and Gene Expression Programs in Breast Cancer Cells

    LIN28A Modulates Splicing and Gene Expression Programs in Breast Cancer Cells by Yang, Jun, Bennett, Brian D., Luo, Shujun, Inoue, Kaoru, Grimm, Sara A., Schroth, Gary P., Bushel, Pierre R., Kinyamu, H. Karimi, Archer, Trevor K.

    Published 2015
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  16. 16
    High-Throughput SuperSAGE for Digital Gene Expression Analysis of Multiple Samples Using Next Generation Sequencing

    High-Throughput SuperSAGE for Digital Gene Expression Analysis of Multiple Samples Using Next Generation Sequencing by Matsumura, Hideo, Yoshida, Kentaro, Luo, Shujun, Kimura, Eiji, Fujibe, Takahiro, Albertyn, Zayed, Barrero, Roberto A., Krüger, Detlev H., Kahl, Günter, Schroth, Gary P., Terauchi, Ryohei

    Published 2010
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  17. 17
    mRNA-Seq of Single Prostate Cancer Circulating Tumor Cells Reveals Recapitulation of Gene Expression and Pathways Found in Prostate Cancer

    mRNA-Seq of Single Prostate Cancer Circulating Tumor Cells Reveals Recapitulation of Gene Expression and Pathways Found in Prostate Cancer by Cann, Gordon M., Gulzar, Zulfiqar G., Cooper, Samantha, Li, Robin, Luo, Shujun, Tat, Mai, Stuart, Sarah, Schroth, Gary, Srinivas, Sandhya, Ronaghi, Mostafa, Brooks, James D., Talasaz, AmirAli H.

    Published 2012
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  18. 18
    Transcriptome-wide Regulation of Pre-mRNA Splicing and mRNA Localization by Muscleblind Proteins

    Transcriptome-wide Regulation of Pre-mRNA Splicing and mRNA Localization by Muscleblind Proteins by Wang, Eric T., Cody, Neal A. L., Jog, Sonali, Biancolella, Michela, Wang, Thomas T., Treacy, Daniel J., Luo, Shujun, Schroth, Gary P., Housman, David E., Reddy, Sita, Lécuyer, Eric, Burge, Christopher B.

    Published 2012
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  19. 19
    Full-Length mRNA-Seq from single cell levels of RNA and individual circulating tumor cells

    Full-Length mRNA-Seq from single cell levels of RNA and individual circulating tumor cells by Ramsköld, Daniel, Luo, Shujun, Wang, Yu-Chieh, Li, Robin, Deng, Qiaolin, Faridani, Omid R., Daniels, Gregory A., Khrebtukova, Irina, Loring, Jeanne F., Laurent, Louise C., Schroth, Gary P., Sandberg, Rickard

    Published 2012
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  20. 20
    Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing

    Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing by Yassour, Moran, Kaplan, Tommy, Fraser, Hunter B., Levin, Joshua Z., Pfiffner, Jenna, Adiconis, Xian, Schroth, Gary, Luo, Shujun, Khrebtukova, Irina, Gnirke, Andreas, Nusbaum, Chad, Thompson, Dawn-Anne, Friedman, Nir, Regev, Aviv

    Published 2009
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