Search Results - Lukas Heumos

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  1. 1
    Comparative targeting analysis of KLF1, BCL11A, and HBG1/2 in CD34+ HSPCs by CRISPR/Cas9 for the induction of fetal hemoglobin

    Comparative targeting analysis of KLF1, BCL11A, and HBG1/2 in CD34+ HSPCs by CRISPR/Cas9 for the induction of fetal hemoglobin by Andrés Lamsfus‐Calle, Alberto Daniel-Moreno, Justin S. Antony, Thomas Epting, Lukas Heumos, Praveen Baskaran, Jakob Admard, Nicolas Casadei, Ngadhnjim Latifi, Darina M. Siegmund, Michael Kormann, Rupert Handgretinger, Markus Mezger

    Published 2020
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  2. 2
    Panpipes: a pipeline for multiomic single-cell and spatial transcriptomic data analysis

    Panpipes: a pipeline for multiomic single-cell and spatial transcriptomic data analysis by Fabiola Curion, Charlotte Rich-Griffin, Devika Agarwal, Sarah Ouologuem, Kévin Rue-Albrecht, L T May, G. Garcia, Lukas Heumos, Tom Thomas, Wojciech Lason, David Sims, Fabian J. Theis, Calliope A. Dendrou

    Published 2024
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  3. 3
    Probe set selection for targeted spatial transcriptomics

    Probe set selection for targeted spatial transcriptomics by Louis B. Kuemmerle, Malte D. Luecken, Alexandra B. Firsova, Lisa Barros de Andrade e Sousa, Lena Straßer, Ilhem Isra Mekki, Francesca Campi, Lukas Heumos, Maiia Shulman, Valentina Beliaeva, Soroor Hediyeh-zadeh, Anna C. Schaar, Krishnaa T. Mahbubani, Alexandros Sountoulidis, Tamás Balassa, Ferenc Kovács, Péter Horváth, Marie Piraud, Ali Ertürk, Christos Samakovlis, Fabian J. Theis

    Published 2024
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  4. 4
    The AIMe registry for artificial intelligence in biomedical research

    The AIMe registry for artificial intelligence in biomedical research by Julian Matschinske, Nicolás Alcaraz, Arriel Benis, Martin Golebiewski, Dominik G. Grimm, Lukas Heumos, Tim Kacprowski, Olga Lazareva, Markus List, Zakaria Louadi, Josch K. Pauling, Nico Pfeifer, Richard Röttger, Veit Schwämmle, Gregor Sturm, Alberto Traverso, Kristel Van Steen, Martiela Vaz de Freitas, Gerda Cristal Villalba Silva, Leonard Wee, Nina K. Wenke, Massimiliano Zanin, Olga Zolotareva, Jan Baumbach, David B. Blumenthal

    Published 2021
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  5. 5
    Pertpy: an end-to-end framework for perturbation analysis

    Pertpy: an end-to-end framework for perturbation analysis by Lukas Heumos, Yuge Ji, L T May, Tessa D. Green, Xinyue Zhang, Xichen Wu, Johannes Ostner, Stefan Peidli, Antonia Schumacher, Karin Hrovatin, Michaela Müller, Faye Chong, Gregor Sturm, Alejandro Tejada, Emma Dann, Mingze Dong, Mojtaba Bahrami, Ilan Gold, Sergei Rybakov, Altana Namsaraeva, Amir Ali Moinfar, Zihe Zheng, Eljas Roellin, Isra Mekki, Chris Sander, Mohammad Lotfollahi, Herbert B. Schiller, Fabian J. Theis

    Published 2024
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  6. 6
    OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data

    OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data by Julianus Pfeuffer, Chris Bielow, Samuel Wein, Kyowon Jeong, Eugen Netz, Axel Walter, Oliver Alka, Lars Nilse, Pasquale Colaianni, Douglas McCloskey, Jihyung Kim, George Rosenberger, Leon Bichmann, Mathias Walzer, J. Veit, Bertrand Boudaud, Matthias Bernt, Nikolaos Patikas, Matteo Pilz, Michał Startek, Svetlana Kutuzova, Lukas Heumos, Joshua Charkow, Justin Sing, Ayesha Feroz, Arslan Siraj, Hendrik Weisser, Tjeerd M. H. Dijkstra, Yasset Pérez‐Riverol, Hannes Röst, Oliver Kohlbacher, Timo Sachsenberg

    Published 2024
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  7. 7
    Ex vivo tissue perturbations coupled to single-cell RNA-seq reveal multilineage cell circuit dynamics in human lung fibrogenesis

    Ex vivo tissue perturbations coupled to single-cell RNA-seq reveal multilineage cell circuit dynamics in human lung fibrogenesis by Niklas J. Lang, Janine Gote-Schniering, Diana Porras-Gonzalez, Lin Yang, Laurens De Sadeleer, R. Christoph Jentzsch, Vladimir A. Shitov, Shuhong Zhou, Meshal Ansari, Ahmed Agami, Christoph H. Mayr, Baharak Hooshiar Kashani, Yuexin Chen, Lukas Heumos, Jeanine C. Pestoni, Eszter Molnár, Emiel Geeraerts, Vincent Anquetil, Laurent Sanière, Melanie Wögrath, Michael Gerckens, Mareike Lehmann, Ali Önder Yildirim, Rudolf Hatz, Nikolaus Kneidinger, Jürgen Behr, Wim Wuyts, Mircea Gabriel Stoleriu, Malte D. Luecken, Fabian J. Theis, Gerald Burgstaller, Herbert B. Schiller

    Published 2023
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  8. 8
    Best practices for single-cell analysis across modalities

    Best practices for single-cell analysis across modalities by Lukas Heumos, Anna C. Schaar, Christopher Lance, Anastasia Litinetskaya, Felix Drost, Luke Zappia, Malte Lücken, Daniel Strobl, Juan Henao, Fabiola Curion, Hananeh Aliee, Meshal Ansari, Pau Badia-i-Mompel, Maren Büttner, Emma Dann, Daniel Dimitrov, Leander Dony, Amit Frishberg, Dongze He, Soroor Hediyeh-zadeh, Leon Hetzel, Ignacio L. Ibarra, Matthew G. Jones, Mohammad Lotfollahi, Laura D. Martens, Christian L. Müller, Mor Nitzan, Johannes Ostner, Giovanni Palla, Rob Patro, Zoe Piran, Ciro Ramírez-Suástegui, Julio Sáez-Rodríguez, Hirak Sarkar, Benjamin Schubert, Lisa Sikkema, Avi Srivastava, Jovan Tanevski, Isaac Virshup, Philipp Weiler, Herbert B. Schiller, Fabian J. Theis

    Published 2023
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  9. 9
    An integrated cell atlas of the human lung in health and disease

    An integrated cell atlas of the human lung in health and disease by Lisa Sikkema, Daniel Strobl, Luke Zappia, Elo Madissoon, Nikolay S. Markov, Laure‐Emmanuelle Zaragosi, Meshal Ansari, Marie‐Jeanne Arguel, Leonie Apperloo, Christophe Bécavin, Marijn Berg, Evgeny Chichelnitskiy, Mei-I Chung, Anne Collin, A.C.A. Gay, Baharak Hooshiar Kashani, Manu Jain, Theodoros Kapellos, Tessa Kole, Christoph H. Mayr, Michael von Papen, Peter N. Le Souëf, Ciro Ramírez-Suástegui, Janine Gote-Schniering, Chase J. Taylor, Thomas Walzthoeni, Chuan Xu, LT Bui, Carlo De Donno, Leander Dony, Minzhe Guo, AJ Gutierrez, Lukas Heumos, Ni Huang, Ignacio L. Ibarra, Nathan D. Jackson, Preetish Kadur Lakshminarasimha Murthy, Mohammad Lotfollahi, Tracy Tabib, Carlos Talavera‐López, Kyle J. Travaglini, Anna Wilbrey-Clark, KB Worlock, Masahiro Yoshida, Tushar Desai, Oliver Eickelberg, Christine S. Falk, Naftali Kaminski, Mark A. Krasnow, Robert Lafyatis, Marko Nikolić, Joseph E. Powell, Jayaraj Rajagopal, Orit Rozenblatt–Rosen, M.A. Seibold, Dean Sheppard, Douglas P. Shepherd, SA Teichmann, Alexander M. Tsankov, J. A. Whitsett, Yan Xu, NE Banovich, Pascal Barbry, TE Duong, KB Meyer, JA Kropski, Dana Pe’er, HB Schiller, PR Tata, Joachim L. Schultze, AV Misharin, Martijn C. Nawijn, Malte D. Luecken, Fabian J. Theis

    Published 2022
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  10. 10
    An integrated cell atlas of the lung in health and disease

    An integrated cell atlas of the lung in health and disease by Lisa Sikkema, Ciro Ramírez-Suástegui, Daniel Strobl, Tessa E. Gillett, Luke Zappia, Elo Madissoon, Nikolay S. Markov, Laure‐Emmanuelle Zaragosi, Yuge Ji, Meshal Ansari, Marie‐Jeanne Arguel, Leonie Apperloo, Martin Banchero, Christophe Bécavin, Marijn Berg, Evgeny Chichelnitskiy, Mei-I Chung, Antoine Collin, Aurore Gay, Janine Gote-Schniering, Baharak Hooshiar Kashani, Kemal İnecik, Manu Jain, Theodore S. Kapellos, Tessa Kole, Sylvie Leroy, Christoph H. Mayr, Amanda J. Oliver, Michael von Papen, Lance Peter, Chase J. Taylor, Thomas Walzthoeni, Chuan Xu, Linh T. Bui, Carlo De Donno, Leander Dony, Alen Faiz, Minzhe Guo, Austin J. Gutierrez, Lukas Heumos, Ni Huang, Ignacio L. Ibarra, Nathan D. Jackson, Preetish Kadur Lakshminarasimha Murthy, Mohammad Lotfollahi, Tracy Tabib, Carlos Talavera‐López, Kyle J. Travaglini, Anna Wilbrey-Clark, Kaylee B. Worlock, Masahiro Yoshida, Yuexin Chen, James S. Hagood, Ahmed Agami, Péter Horváth, Joakim Lundeberg, Charles‐Hugo Marquette, Gloria Pryhuber, Chistos Samakovlis, Xin Sun, Lorraine B. Ware, Kun Zhang, Maarten van den Berge, Yohan Bossé, Tushar Desai, Oliver Eickelberg, Naftali Kaminski, Mark A. Krasnow, Robert Lafyatis, Marko Nikolić, Joseph E. Powell, Jayaraj Rajagopal, Mauricio Rojas, Orit Rozenblatt–Rosen, Max A. Seibold, Dean Sheppard, Douglas P. Shepherd, Don D. Sin, Wim Timens, Alexander M. Tsankov, Jeffrey A. Whitsett, Yan Xu, Nicholas E. Banovich, Pascal Barbry, Thu Elizabeth Duong, Christine S. Falk, Kerstin B. Meyer, Jonathan A. Kropski, Dana Pe’er, Herbert B. Schiller, Purushothama Rao Tata, Joachim L. Schultze, Sara A. Teichmann, Alexander V. Misharin, Martijn C. Nawijn, Malte D. Luecken, Fabian J. Theis

    Published 2023
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