Canlyniadau Chwilio - Lu, Songjian

Integrating Genome and Functional Genomics Data to Reveal Perturbed Signaling Pathways in Ovarian Cancers gan Lu, Songjian, Lu, Xinghua

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Using graph models to find transcription factor modules: the hitting set problem and an exact algorithm gan Lu, Songjian, Lu, Xinghua

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BEM: Mining Coregulation Patterns in Transcriptomics via Boolean Matrix Factorization gan Liang, Lifan, Zhu, Kunju, Lu, Songjian

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An exact algorithm for finding cancer driver somatic genome alterations: the weighted mutually exclusive maximum set cover problem gan Lu, Songjian, Mandava, Gunasheil, Yan, Gaibo, Lu, Xinghua

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A signal-based method for finding driver modules of breast cancer metastasis to the lung gan Yan, Gaibo, Chen, Vicky, Lu, Xinghua, Lu, Songjian

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A novel method of using Deep Belief Networks and genetic perturbation data to search for yeast signaling pathways gan Lu, Songjian, Fan, Xiaonan, Chen, Lujia, Lu, Xinghua

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ORN: Inferring patient-specific dysregulation status of pathway modules in cancer with OR-gate Network gan Liang, Lifan, Zhu, Kunju, Tao, Junyan, Lu, Songjian

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From Data towards Knowledge: Revealing the Architecture of Signaling Systems by Unifying Knowledge Mining and Data Mining of Systematic Perturbation Data gan Lu, Songjian, Jin, Bo, Cowart, L. Ashley, Lu, Xinghua

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Integrating data and knowledge to identify functional modules of genes: a multilayer approach gan Liang, Lifan, Chen, Vicky, Zhu, Kunju, Fan, Xiaonan, Lu, Xinghua, Lu, Songjian

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Prediction of lncRNA-disease associations by integrating diverse heterogeneous information sources with RWR algorithm and positive pointwise mutual information gan Fan, Xiao-Nan, Zhang, Shao-Wu, Zhang, Song-Yao, Zhu, Kunju, Lu, Songjian

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Tumour-specific Causal Inference Discovers Distinct Disease Mechanisms Underlying Cancer Subtypes gan Xue, Yifan, Cooper, Gregory, Cai, Chunhui, Lu, Songjian, Hu, Baoli, Ma, Xiaojun, Lu, Xinghua

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Identifying Driver Genomic Alterations in Cancers by Searching Minimum-Weight, Mutually Exclusive Sets gan Lu, Songjian, Lu, Kevin N., Cheng, Shi-Yuan, Hu, Bo, Ma, Xiaojun, Nystrom, Nicholas, Lu, Xinghua

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The Role of Fibroblast Growth Factor 19 in Hepatocellular Carcinoma gan Chen, Zhongguang, Jiang, Lili, Liang, Lifan, Koral, Kelly, Zhang, Qian, Zhao, Lei, Lu, Songjian, Tao, Junyan

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Distinct Signaling Roles of Ceramide Species in Yeast Revealed Through Systematic Perturbation and Systems Biology Analyses gan Montefusco, David J., Chen, Lujia, Matmati, Nabil, Lu, Songjian, Newcomb, Benjamin, Cooper, Gregory F., Hannun, Yusuf A., Lu, Xinghua

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Prolonged Cold Ischemia Induces Necroptotic Cell Death in Ischemia–Reperfusion Injury and Contributes to Primary Graft Dysfunction after Lung Transplantation gan Wang, Xingan, O’Brien, Michael Emmet, Yu, Junyi, Xu, Che, Zhang, Qiang, Lu, Songjian, Liang, Lifan, An, Xiaojing, McDyer, John F., Mallampalli, Rama K.

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GRWD1-WDR5-MLL2 Epigenetic Complex Mediates H3K4me3 Mark and Is Essential for Kaposi’s Sarcoma-Associated Herpesvirus-Induced Cellular Transformation gan Wei, Shan, Lu, Songjian, Liang, Lifan, Wang, Xian, Li, Wan, Li, Tingting, Chen, Luping, Ju, Enguo, Zhang, Xinquan, Lai, Zhao, Huang, Yufei, Lu, Xinghua, Gao, Shou-Jiang

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Signal-oriented pathway analyses reveal a signaling complex as a synthetic lethal target for p53 mutations gan Lu, Songjian, Cai, Chunhui, Yan, Gonghong, Zhou, Zhuan, Wan, Yong, Chen, Vicky, Chen, Lujia, Cooper, Gregory F., Obeid, Lina M., Hannun, Yusuf A., Lee, Adrian V., Lu, Xinghua

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Genome-wide methylomic and transcriptomic analyses identify subtype-specific epigenetic signatures commonly dysregulated in glioma stem cells and glioblastoma gan Pangeni, Rajendra P., Zhang, Zhou, Alvarez, Angel A., Wan, Xuechao, Sastry, Namratha, Lu, Songjian, Shi, Taiping, Huang, Tianzhi, Lei, Charles X., James, C. David, Kessler, John A., Brennan, Cameron W., Nakano, Ichiro, Lu, Xinghua, Hu, Bo, Zhang, Wei, Cheng, Shi-Yuan

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Systematic discovery of the functional impact of somatic genome alterations in individual tumors through tumor-specific causal inference gan Cai, Chunhui, Cooper, Gregory F., Lu, Kevin N., Ma, Xiaojun, Xu, Shuping, Zhao, Zhenlong, Chen, Xueer, Xue, Yifan, Lee, Adrian V., Clark, Nathan, Chen, Vicky, Lu, Songjian, Chen, Lujia, Yu, Liyue, Hochheiser, Harry S., Jiang, Xia, Wang, Q. Jane, Lu, Xinghua

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Activation of Rac1 by Src-dependent phosphorylation of Dock180(Y1811) mediates PDGFRα-stimulated glioma tumorigenesis in mice and humans gan Feng, Haizhong, Hu, Bo, Liu, Kun-Wei, Li, Yanxin, Lu, Xinghua, Cheng, Tao, Yiin, Jia-Jean, Lu, Songjian, Keezer, Susan, Fenton, Tim, Furnari, Frank B., Hamilton, Ronald L., Vuori, Kristiina, Sarkaria, Jann N., Nagane, Motoo, Nishikawa, Ryo, Cavenee, Webster K., Cheng, Shi-Yuan

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