Search Results - Lingyun Song

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  1. 1
    DNase-seq: A High-Resolution Technique for Mapping Active Gene Regulatory Elements across the Genome from Mammalian Cells

    DNase-seq: A High-Resolution Technique for Mapping Active Gene Regulatory Elements across the Genome from Mammalian Cells by Lingyun Song, Gregory E. Crawford

    Published 2010
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  2. 2
    Evolutionary genomics of camouflage innovation in the orchid mantis

    Evolutionary genomics of camouflage innovation in the orchid mantis by Guangping Huang, Lingyun Song, Xin Du, Xin Huang, Fuwen Wei

    Published 2023
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  3. 3
    Genome-wide identification of regulatory elements in Sertoli cells

    Genome-wide identification of regulatory elements in Sertoli cells by Danielle M. Maatouk, Anirudh Natarajan, Yoichiro Shibata, Lingyun Song, Gregory E. Crawford, Uwe Ohler, Blanche Capel

    Published 2017
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  4. 4
    Microbiota regulate intestinal epithelial gene expression by suppressing the transcription factor Hepatocyte nuclear factor 4 alpha

    Microbiota regulate intestinal epithelial gene expression by suppressing the transcription factor Hepatocyte nuclear factor 4 alpha by James M. Davison, Colin R. Lickwar, Lingyun Song, Ghislaı̀n Breton, Gregory E. Crawford, John F. Rawls

    Published 2017
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  5. 5
    Interactions of Chromatin Context, Binding Site Sequence Content, and Sequence Evolution in Stress-Induced p53 Occupancy and Transactivation

    Interactions of Chromatin Context, Binding Site Sequence Content, and Sequence Evolution in Stress-Induced p53 Occupancy and Transactivation by Dan Su, Xuting Wang, Michelle R. Campbell, Lingyun Song, Alexias Safi, Gregory E. Crawford, Douglas A. Bell

    Published 2015
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  6. 6
    Notch signaling genes

    Notch signaling genes by Jolyon Terragni, Guoqiang Zhang, Zhiyi Sun, Sriharsa Pradhan, Lingyun Song, Gregory E. Crawford, Michelle Lacey, Melanie Ehrlich

    Published 2014
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  7. 7
    Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions

    Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions by Nathan C. Sheffield, Robert E. Thurman, Lingyun Song, Alexias Safi, J Stamatoyannopoulos, Boris Lenhard, Gregory E. Crawford, Terrence S. Furey

    Published 2013
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  8. 8
    Identification and requirements of enhancers that direct gene expression during zebrafish fin regeneration

    Identification and requirements of enhancers that direct gene expression during zebrafish fin regeneration by John Thompson, Jianhong Ou, Nutishia Lee, Kwangdeok Shin, Valentina Cigliola, Lingyun Song, Gregory E. Crawford, Junsu Kang, Kenneth D. Poss

    Published 2020
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  9. 9
    High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells

    High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells by Alan P. Boyle, Lingyun Song, Bum-Kyu Lee, Darin London, Damian Keefe, Ewan Birney, Vishwanath R. Iyer, Gregory E. Crawford, Terrence S. Furey

    Published 2010
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  10. 10
    DNA methylation and differentiation: HOX genes in muscle cells

    DNA methylation and differentiation: HOX genes in muscle cells by Koji Tsumagari, Carl Baribault, Jolyon Terragni, Sruti Chandra, Chloe Renshaw, Zhiyi Sun, Lingyun Song, Gregory E. Crawford, Sriharsa Pradhan, Michelle Lacey, Melanie Ehrlich

    Published 2013
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  11. 11
    Direct GR Binding Sites Potentiate Clusters of TF Binding across the Human Genome

    Direct GR Binding Sites Potentiate Clusters of TF Binding across the Human Genome by Christopher M. Vockley, Anthony D’Ippolito, Ian C. McDowell, William H. Majoros, Alexias Safi, Lingyun Song, Gregory E. Crawford, Timothy E. Reddy

    Published 2016
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  12. 12
    CRISPR–Cas9 epigenome editing enables high-throughput screening for functional regulatory elements in the human genome

    CRISPR–Cas9 epigenome editing enables high-throughput screening for functional regulatory elements in the human genome by Tyler S. Klann, Joshua B. Black, Malathi Chellappan, Alexias Safi, Lingyun Song, Isaac B. Hilton, Gregory E. Crawford, Timothy E. Reddy, Charles A. Gersbach

    Published 2017
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  13. 13
    Identification of enhancer regulatory elements that direct epicardial gene expression during zebrafish heart regeneration

    Identification of enhancer regulatory elements that direct epicardial gene expression during zebrafish heart regeneration by Yingxi Cao, Yu Xia, Joseph Balowski, Jianhong Ou, Lingyun Song, Alexias Safi, Tim M. Curtis, Gregory E. Crawford, Kenneth D. Poss, Jingli Cao

    Published 2022
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  14. 14
    Site-Specific Silencing of Regulatory Elements as a Mechanism of X Inactivation

    Site-Specific Silencing of Regulatory Elements as a Mechanism of X Inactivation by J. Mauro Calabrese, Wei Sun, Lingyun Song, Joshua W. Mugford, Lucy H. Williams, Della Yee, Joshua Starmer, Piotr A. Mieczkowski, Gregory E. Crawford, Terry Magnuson

    Published 2012
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  15. 15
    Highly specific epigenome editing by CRISPR-Cas9 repressors for silencing of distal regulatory elements

    Highly specific epigenome editing by CRISPR-Cas9 repressors for silencing of distal regulatory elements by Pratiksha I. Thakore, Anthony D’Ippolito, Lingyun Song, Alexias Safi, Nishkala K. Shivakumar, Ami M. Kabadi, Timothy E. Reddy, Gregory E. Crawford, Charles A. Gersbach

    Published 2015
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  16. 16
    Enhancer selection dictates gene expression responses in remote organs during tissue regeneration

    Enhancer selection dictates gene expression responses in remote organs during tissue regeneration by Fei Sun, Jianhong Ou, Adam R. Shoffner, Yu Luan, Hongbo Yang, Lingyun Song, Alexias Safi, Jingli Cao, Feng Yue, Gregory E. Crawford, Kenneth D. Poss

    Published 2022
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  17. 17
    A dynamic H3K27ac signature identifies VEGFA-stimulated endothelial enhancers and requires EP300 activity

    A dynamic H3K27ac signature identifies VEGFA-stimulated endothelial enhancers and requires EP300 activity by Bing Zhang, Daniel S. Day, Joshua W. K. Ho, Lingyun Song, Jingjing Cao, Danos C. Christodoulou, Jonathan G. Seidman, Gregory E. Crawford, Peter J. Park, William T. Pu

    Published 2013
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  18. 18
    Epigenomic Comparison Reveals Activation of “Seed” Enhancers during Transition from Naive to Primed Pluripotency

    Epigenomic Comparison Reveals Activation of “Seed” Enhancers during Transition from Naive to Primed Pluripotency by Daniel C. Factor, Olivia Corradin, Gabriel E. Zentner, Alina Saiakhova, Lingyun Song, Josh Chenoweth, Ronald D.G. McKay, Gregory E. Crawford, Peter C. Scacheri, Paul J. Tesar

    Published 2014
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  19. 19
    Regulation of chromatin accessibility and Zic binding at enhancers in the developing cerebellum

    Regulation of chromatin accessibility and Zic binding at enhancers in the developing cerebellum by Christopher L. Frank, Fang Liu, Ranjula Wijayatunge, Lingyun Song, Matthew T. Biegler, Marty G. Yang, Christopher M. Vockley, Alexias Safi, Charles A. Gersbach, Gregory E. Crawford, Anne E. West

    Published 2015
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  20. 20
    Genome-wide specificity of DNA binding, gene regulation, and chromatin remodeling by TALE- and CRISPR/Cas9-based transcriptional activators

    Genome-wide specificity of DNA binding, gene regulation, and chromatin remodeling by TALE- and CRISPR/Cas9-based transcriptional activators by Lauren R. Polstein, Pablo Pérez‐Piñera, D. Dewran Koçak, Christopher M. Vockley, Peggy J. Bledsoe, Lingyun Song, Alexias Safi, Gregory E. Crawford, Timothy E. Reddy, Charles A. Gersbach

    Published 2015
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