Suchergebnisse - Leonardo Collado‐Torres

Treffer weiter einschränken
  1. 1
    recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor

    recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor von Leonardo Collado‐Torres, Abhinav Nellore, Andrew E. Jaffe

    Veröffentlicht 2017
    Volltext Volltext
    Pré-impressão
    Zu den Favoriten
    Gespeichert in:
  2. 2
    Improving the value of public RNA-seq expression data by phenotype prediction

    Improving the value of public RNA-seq expression data by phenotype prediction von Shannon Ellis, Leonardo Collado‐Torres, Andrew E. Jaffe, Jeffrey T. Leek

    Veröffentlicht 2018
    Volltext Volltext
    Artigo
    Zu den Favoriten
    Gespeichert in:
  3. 3
    Interspecies interactions that result in<i>Bacillus subtilis</i>forming biofilms are mediated mainly by members of its own genus

    Interspecies interactions that result in<i>Bacillus subtilis</i>forming biofilms are mediated mainly by members of its own genus von Elizabeth A. Shank, Vanja Klepac‐Ceraj, Leonardo Collado‐Torres, Gordon E. Powers, Richard Losick, Roberto Kolter

    Veröffentlicht 2011
    Volltext Volltext
    Artigo
    Zu den Favoriten
    Gespeichert in:
  4. 4
    SynGAP isoforms differentially regulate synaptic plasticity and dendritic development

    SynGAP isoforms differentially regulate synaptic plasticity and dendritic development von Yoichi Araki, Ingie Hong, Timothy R. Gamache, Shaowen Ju, Leonardo Collado‐Torres, Joo Heon Shin, Richard L. Huganir

    Veröffentlicht 2020
    Volltext
    Artigo
    Zu den Favoriten
    Gespeichert in:
  5. 5
    Challenges and opportunities to computationally deconvolve heterogeneous tissue with varying cell sizes using single-cell RNA-sequencing datasets

    Challenges and opportunities to computationally deconvolve heterogeneous tissue with varying cell sizes using single-cell RNA-sequencing datasets von Sean K. Maden, Sang Ho Kwon, Louise A. Huuki-Myers, Leonardo Collado‐Torres, Stephanie C. Hicks, Kristen R. Maynard

    Veröffentlicht 2023
    Volltext Volltext
    Revisão
    Zu den Favoriten
    Gespeichert in:
  6. 6
    Rail-RNA: scalable analysis of RNA-seq splicing and coverage

    Rail-RNA: scalable analysis of RNA-seq splicing and coverage von Abhinav Nellore, Leonardo Collado‐Torres, Andrew E. Jaffe, José Alquicira‐Hernandez, Christopher Wilks, Jacob Pritt, James T. Morton, Jeffrey T. Leek, Ben Langmead

    Veröffentlicht 2016
    Volltext Volltext
    Artigo
    Zu den Favoriten
    Gespeichert in:
  7. 7
    Reproducible RNA-seq analysis using recount2

    Reproducible RNA-seq analysis using recount2 von Leonardo Collado‐Torres, Abhinav Nellore, Kai Kammers, Shannon Ellis, Margaret A. Taub, Kasper D. Hansen, Andrew E. Jaffe, Ben Langmead, Jeffrey T. Leek

    Veröffentlicht 2017
    Volltext
    Carta
    Zu den Favoriten
    Gespeichert in:
  8. 8
    Flexible expressed region analysis for RNA-seq with<tt>derfinder</tt>

    Flexible expressed region analysis for RNA-seq with<tt>derfinder</tt> von Leonardo Collado‐Torres, Abhinav Nellore, Alyssa C. Frazee, Christopher Wilks, Michael I. Love, Ben Langmead, Rafael A. Irizarry, Jeffrey T. Leek, Andrew E. Jaffe

    Veröffentlicht 2016
    Volltext Volltext
    Artigo
    Zu den Favoriten
    Gespeichert in:
  9. 9
    SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor

    SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor von Dario Righelli, Lukas M. Weber, Helena L. Crowell, Brenda Pardo, Leonardo Collado‐Torres, Shila Ghazanfar, Aaron T. L. Lun, Stephanie C. Hicks, Davide Risso

    Veröffentlicht 2022
    Volltext Volltext
    Artigo
    Zu den Favoriten
    Gespeichert in:
  10. 10
    spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data

    spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data von Brenda Pardo, Abby Spangler, Lukas M. Weber, Stephanie C. Page, Stephanie C. Hicks, Andrew E. Jaffe, Keri Martinowich, Kristen R. Maynard, Leonardo Collado‐Torres

    Veröffentlicht 2022
    Volltext Volltext
    Artigo
    Zu den Favoriten
    Gespeichert in:
  11. 11
    Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive

    Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive von Abhinav Nellore, Andrew E. Jaffe, Jean‐Philippe Fortin, José Alquicira‐Hernandez, Leonardo Collado‐Torres, Siruo Wang, Robert A. Phillips, Nishika Karbhari, Kasper D. Hansen, Ben Langmead, Jeffrey T. Leek

    Veröffentlicht 2016
    Volltext
    Artigo
    Zu den Favoriten
    Gespeichert in:
  12. 12
    Comprehensive assessment of multiple biases in small RNA sequencing reveals significant differences in the performance of widely used methods

    Comprehensive assessment of multiple biases in small RNA sequencing reveals significant differences in the performance of widely used methods von Carrie Wright, Anandita Rajpurohit, Emily E. Burke, Courtney Williams, Leonardo Collado‐Torres, Martha Kimos, Nicholas J. Brandon, A.J. Cross, Andrew E. Jaffe, Daniel R. Weinberger, Joo Heon Shin

    Veröffentlicht 2019
    Volltext Volltext
    Artigo
    Zu den Favoriten
    Gespeichert in:
  13. 13
    Developmental regulation of human cortex transcription and its clinical relevance at single base resolution

    Developmental regulation of human cortex transcription and its clinical relevance at single base resolution von Andrew E. Jaffe, Jooheon Shin, Leonardo Collado‐Torres, Jeffrey T. Leek, Ran Tao, Chao Li, Yuan Gao, Yankai Jia, Brady J. Maher, Thomas M. Hyde, Joel E. Kleinman, Daniel R. Weinberger

    Veröffentlicht 2014
    Volltext
    Artigo
    Zu den Favoriten
    Gespeichert in:
  14. 14
    Altered expression of histamine signaling genes in autism spectrum disorder

    Altered expression of histamine signaling genes in autism spectrum disorder von Carrie Wright, Joo Heon Shin, Anandita Rajpurohit, Amy Deep‐Soboslay, Leonardo Collado‐Torres, Nicholas J. Brandon, Thomas M. Hyde, Joel E. Kleinman, Andrew E. Jaffe, A.J. Cross, Daniel R. Weinberger

    Veröffentlicht 2017
    Volltext Volltext
    Revisão
    Zu den Favoriten
    Gespeichert in:
  15. 15
    Large-scale transcriptomic analyses of major depressive disorder reveal convergent dysregulation of synaptic pathways in excitatory neurons

    Large-scale transcriptomic analyses of major depressive disorder reveal convergent dysregulation of synaptic pathways in excitatory neurons von Fernando S. Goes, Leonardo Collado‐Torres, Peter P. Zandi, Louise A. Huuki-Myers, Ran Tao, Andrew E. Jaffe, Geo Pertea, Joo Heon Shin, Daniel R. Weinberger, Joel E. Kleinman, Thomas M. Hyde

    Veröffentlicht 2025
    Volltext
    Artigo
    Zu den Favoriten
    Gespeichert in:
  16. 16
    Integrated DNA methylation and gene expression profiling across multiple brain regions implicate novel genes in Alzheimer’s disease

    Integrated DNA methylation and gene expression profiling across multiple brain regions implicate novel genes in Alzheimer’s disease von Stephen A. Semick, Rahul Bharadwaj, Leonardo Collado‐Torres, Ran Tao, Joo Heon Shin, Amy Deep‐Soboslay, James R. Weiss, Daniel R. Weinberger, Thomas M. Hyde, Joel E. Kleinman, Andrew E. Jaffe, Venkata S. Mattay

    Veröffentlicht 2019
    Volltext
    Artigo
    Zu den Favoriten
    Gespeichert in:
  17. 17
    Incomplete annotation has a disproportionate impact on our understanding of Mendelian and complex neurogenetic disorders

    Incomplete annotation has a disproportionate impact on our understanding of Mendelian and complex neurogenetic disorders von David Zhang, Sebastian Guelfi, Sonia García-Ruiz, Beatrice Costa, Regina H. Reynolds, Karishma D’Sa, Wenfei Liu, Thomas Courtin, Amy Peterson, Andrew E. Jaffe, John Hardy, Juan A. Botía, Leonardo Collado‐Torres, Mina Ryten

    Veröffentlicht 2020
    Volltext Volltext
    Artigo
    Zu den Favoriten
    Gespeichert in:
  18. 18
    Divergent neuronal DNA methylation patterns across human cortical development reveal critical periods and a unique role of CpH methylation

    Divergent neuronal DNA methylation patterns across human cortical development reveal critical periods and a unique role of CpH methylation von Amanda J. Price, Leonardo Collado‐Torres, Nikolay A. Ivanov, Wei Xia, Emily E. Burke, Joo Heon Shin, Ran Tao, Liang Ma, Yankai Jia, Thomas M. Hyde, Joel E. Kleinman, Daniel R. Weinberger, Andrew E. Jaffe

    Veröffentlicht 2019
    Volltext Volltext
    Artigo
    Zu den Favoriten
    Gespeichert in:
  19. 19
    recount3: summaries and queries for large-scale RNA-seq expression and splicing

    recount3: summaries and queries for large-scale RNA-seq expression and splicing von Christopher Wilks, Shijie Zheng, Feng Yong Chen, Rone Charles, Brad Solomon, Jonathan P. Ling, Eddie L. Imada, David Zhang, Lance Joseph, Jeffrey T. Leek, Andrew E. Jaffe, Abhinav Nellore, Leonardo Collado‐Torres, Kasper D. Hansen, Ben Langmead

    Veröffentlicht 2021
    Volltext Volltext
    Artigo
    Zu den Favoriten
    Gespeichert in:
  20. 20
    Benchmark of cellular deconvolution methods using a multi-assay dataset from postmortem human prefrontal cortex

    Benchmark of cellular deconvolution methods using a multi-assay dataset from postmortem human prefrontal cortex von Louise A. Huuki-Myers, Kelsey D. Montgomery, Sang Ho Kwon, Sophia Cinquemani, Nicholas J. Eagles, Daianna González‐Padilla, Sean K. Maden, Joel E. Kleinman, Thomas M. Hyde, Stephanie C. Hicks, Kristen R. Maynard, Leonardo Collado‐Torres

    Veröffentlicht 2025
    Volltext
    Artigo
    Zu den Favoriten
    Gespeichert in:

Suchwerkzeuge: