Search Results - Lapidus, Alla

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  1. 1
    CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities

    CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities by Kondratenko, Yulia, Korobeynikov, Anton, Lapidus, Alla

    Published 2020
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  2. 2
    Correction to: CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities

    Correction to: CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities by Kondratenko, Yulia, Korobeynikov, Anton, Lapidus, Alla

    Published 2020
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  3. 3
    Metagenomic Data Assembly – The Way of Decoding Unknown Microorganisms

    Metagenomic Data Assembly – The Way of Decoding Unknown Microorganisms by Lapidus, Alla L., Korobeynikov, Anton I.

    Published 2021
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  4. 4
    Fungal Metagenome of Chernevaya Taiga Soils: Taxonomic Composition, Differential Abundance and Factors Related to Plant Gigantism

    Fungal Metagenome of Chernevaya Taiga Soils: Taxonomic Composition, Differential Abundance and Factors Related to Plant Gigantism by Rayko, Mikhail, Sokornova, Sophie, Lapidus, Alla

    Published 2021
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  5. 5
    Plasmid detection and assembly in genomic and metagenomic data sets

    Plasmid detection and assembly in genomic and metagenomic data sets by Antipov, Dmitry, Raiko, Mikhail, Lapidus, Alla, Pevzner, Pavel A.

    Published 2019
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  6. 6
    rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data

    rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data by Bushmanova, Elena, Antipov, Dmitry, Lapidus, Alla, Prjibelski, Andrey D

    Published 2019
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  7. 7
    Methylotrophy in Methylobacterium extorquens AM1 from a Genomic Point of View

    Methylotrophy in Methylobacterium extorquens AM1 from a Genomic Point of View by Chistoserdova, Ludmila, Chen, Sung-Wei, Lapidus, Alla, Lidstrom, Mary E.

    Published 2003
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  8. 8
    A Bioinformatician's Guide to Metagenomics

    A Bioinformatician's Guide to Metagenomics by Kunin, Victor, Copeland, Alex, Lapidus, Alla, Mavromatis, Konstantinos, Hugenholtz, Philip

    Published 2008
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  9. 9
    Draft genome of Prochlorothrix hollandica CCAP 1490/1(T) (CALU1027), the chlorophyll a/b-containing filamentous cyanobacterium

    Draft genome of Prochlorothrix hollandica CCAP 1490/1(T) (CALU1027), the chlorophyll a/b-containing filamentous cyanobacterium by Velichko, Natalia, Rayko, Mikhail, Chernyaeva, Ekaterina, Lapidus, Alla, Pinevich, Alexander

    Published 2016
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  10. 10
    Facile Recovery of Individual High-Molecular-Weight, Low-Copy-Number Natural Plasmids for Genomic Sequencing

    Facile Recovery of Individual High-Molecular-Weight, Low-Copy-Number Natural Plasmids for Genomic Sequencing by Williams, Laura E., Detter, Chris, Barry, Kerrie, Lapidus, Alla, Summers, Anne O.

    Published 2006
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  11. 11
    The Genetically Remote Pathogenic Strain NVH391-98 of the Bacillus cereus Group Is Representative of a Cluster of Thermophilic Strains

    The Genetically Remote Pathogenic Strain NVH391-98 of the Bacillus cereus Group Is Representative of a Cluster of Thermophilic Strains by Auger, Sandrine, Galleron, Nathalie, Bidnenko, Elena, Ehrlich, S. Dusko, Lapidus, Alla, Sorokin, Alexei

    Published 2008
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  12. 12
    Complete Genome Sequence of the Photosynthetic Purple Nonsulfur Bacterium Rhodobacter capsulatus SB 1003

    Complete Genome Sequence of the Photosynthetic Purple Nonsulfur Bacterium Rhodobacter capsulatus SB 1003 by Strnad, Hynek, Lapidus, Alla, Paces, Jan, Ulbrich, Pavel, Vlcek, Cestmir, Paces, Vaclav, Haselkorn, Robert

    Published 2010
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  13. 13
    The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens

    The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens by Aklujkar, Muktak, Krushkal, Julia, DiBartolo, Genevieve, Lapidus, Alla, Land, Miriam L, Lovley, Derek R

    Published 2009
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  14. 14
    Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation

    Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation by Salinero, Kennan Kellaris, Keller, Keith, Feil, William S, Feil, Helene, Trong, Stephan, Di Bartolo, Genevieve, Lapidus, Alla

    Published 2009
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  15. 15
    Extending rnaSPAdes functionality for hybrid transcriptome assembly

    Extending rnaSPAdes functionality for hybrid transcriptome assembly by Prjibelski, Andrey D., Puglia, Giuseppe D., Antipov, Dmitry, Bushmanova, Elena, Giordano, Daniela, Mikheenko, Alla, Vitale, Domenico, Lapidus, Alla

    Published 2020
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  16. 16
    Genome sequencing reveals complex secondary metabolome in the marine actinomycete Salinispora tropica

    Genome sequencing reveals complex secondary metabolome in the marine actinomycete Salinispora tropica by Udwary, Daniel W., Zeigler, Lisa, Asolkar, Ratnakar N., Singan, Vasanth, Lapidus, Alla, Fenical, William, Jensen, Paul R., Moore, Bradley S.

    Published 2007
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  17. 17
    Complete mitochondrial genomes of Baikal oilfishes (Perciformes: Cottoidei), earth’s deepest-swimming freshwater fishes

    Complete mitochondrial genomes of Baikal oilfishes (Perciformes: Cottoidei), earth’s deepest-swimming freshwater fishes by Sandel, Michael W., Aguilar, Andres, Fast, Kayla, O’Brien, Stephen, Lapidus, Alla, Allison, David B., Teterina, Veronika, Kirilchik, Sergei

    Published 2017
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  18. 18
    Draft Genome Sequence of Mn(II)-Oxidizing Bacterium Oxalobacteraceae sp. Strain AB_14

    Draft Genome Sequence of Mn(II)-Oxidizing Bacterium Oxalobacteraceae sp. Strain AB_14 by Bushman, Timothy J., Akob, Denise M., Bohu, Tsing, Beyer, Andrea, Woyke, Tanja, Shapiro, Nicole, Lapidus, Alla, Klenk, Hans-Peter, Küsel, Kirsten

    Published 2019
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  19. 19
    Genomic Variations in Drug Resistant Mycobacterium tuberculosis Strains Collected from Patients with Different Localization of Infection

    Genomic Variations in Drug Resistant Mycobacterium tuberculosis Strains Collected from Patients with Different Localization of Infection by Chernyaeva, Ekaterina, Rotkevich, Mikhail, Krasheninnikova, Ksenia, Lapidus, Alla, Polev, Dmitrii E., Solovieva, Natalia, Zhuravlev, Viacheslav, Yablonsky, Piotr, O’Brien, Stephen J.

    Published 2020
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  20. 20
    Draft Genome Sequence of Bordetella sp. Strain FB-8, Isolated from a Former Uranium Mining Area in Germany

    Draft Genome Sequence of Bordetella sp. Strain FB-8, Isolated from a Former Uranium Mining Area in Germany by Harris, Cassandra R., Akob, Denise M., Fabisch, Maria, Beulig, Felix, Woyke, Tanja, Shapiro, Nicole, Lapidus, Alla, Klenk, Hans-Peter, Küsel, Kirsten

    Published 2021
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