检索结果 - Kyle Ellrott

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  1. 1
    Expansion of the Protein Repertoire in Newly Explored Environments: Human Gut Microbiome Specific Protein Families

    Expansion of the Protein Repertoire in Newly Explored Environments: Human Gut Microbiome Specific Protein Families 由 Kyle Ellrott, Lukasz Jaroszewski, Weizhong Li, John Wooley, Adam Godzik

    出版 2010
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  2. 2
    PROSPECT II: protein structure prediction program for genome-scale applications

    PROSPECT II: protein structure prediction program for genome-scale applications 由 Dongwoo Kim, Dong Xu, Jingzhong Guo, Kyle Ellrott, Ying Xu

    出版 2003
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  3. 3
    Enabling transparent and collaborative computational analysis of 12 tumor types within The Cancer Genome Atlas

    Enabling transparent and collaborative computational analysis of 12 tumor types within The Cancer Genome Atlas 由 Larsson Omberg, Kyle Ellrott, Yuan Yuan, Cyriac Kandoth, Chris Wong, Michael Kellen, Stephen Friend, Joshua M. Stuart, Han Liang, Jake Lin

    出版 2013
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  4. 4
    The Cancer Genome Atlas Pan-Cancer analysis project

    The Cancer Genome Atlas Pan-Cancer analysis project 由 John N. Weinstein, Jun Li, Gordon B. Mills, Kenna Shaw, Brad Ozenberger, Kyle Ellrott, Ilya Shmulevich, Chris Sander, Joshua M. Stuart

    出版 2013
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  5. 5
    The UCSC Cancer Genomics Browser: update 2013

    The UCSC Cancer Genomics Browser: update 2013 由 Mary J. Goldman, Brian Craft, Teresa Swatloski, Kyle Ellrott, Melissa Cline, Mark Diekhans, Singer Ma, C Wilks, Joshua M. Stuart, David Haussler, Jingchun Zhu

    出版 2012
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  6. 6
    Global optimization of somatic variant identification in cancer genomes with a global community challenge

    Global optimization of somatic variant identification in cancer genomes with a global community challenge 由 Paul C. Boutros, Adam D. Ewing, Kyle Ellrott, Thea Norman, Kristen K. Dang, Yin Hu, Michael Kellen, Christine Suver, J Christopher Bare, Lincoln Stein, Paul T. Spellman, Gustavo Stolovitzky, Stephen Friend, Jake Lin, Joshua M. Stuart

    出版 2014
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  7. 7
    TumorMap: Exploring the Molecular Similarities of Cancer Samples in an Interactive Portal

    TumorMap: Exploring the Molecular Similarities of Cancer Samples in an Interactive Portal 由 Yulia Newton, Adam M. Novak, Teresa Swatloski, Duncan C. McColl, Sahil Chopra, Kiley Graim, Alana S. Weinstein, Robert Baertsch, Sofie R. Salama, Kyle Ellrott, M. R. Chopra, Theodore C. Goldstein, David Haussler, Olena Morozova, Joshua M. Stuart

    出版 2017
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  8. 8
    Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection

    Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection 由 Adam D. Ewing, Kathleen E. Houlahan, Yin Hu, Kyle Ellrott, Cristian Caloian, Takafumi N. Yamaguchi, J Christopher Bare, Christine P’ng, Daryl Waggott, Veronica Y. Sabelnykova, Michael Kellen, Thea Norman, David Haussler, Stephen Friend, Gustavo Stolovitzky, Jake Lin, Joshua M. Stuart, Paul C. Boutros

    出版 2015
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  9. 9
    Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection

    Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection 由 Anna Y. Lee, Adam D. Ewing, Kyle Ellrott, Yin Hu, Kathleen E. Houlahan, J Christopher Bare, Shadrielle M. G. Espiritu, Vincent Huang, Kristen K. Dang, Zechen Chong, Cristian Caloian, Takafumi N. Yamaguchi, Michael Kellen, Ken Chen, Thea Norman, Stephen Friend, Justin Guinney, Gustavo Stolovitzky, David Haussler, Jake Lin, Joshua M. Stuart, Paul C. Boutros

    出版 2018
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  10. 10
    Classification of non-TCGA cancer samples to TCGA molecular subtypes using compact feature sets

    Classification of non-TCGA cancer samples to TCGA molecular subtypes using compact feature sets 由 Kyle Ellrott, Christopher K. Wong, Christina Yau, Mauro A.A. Castro, Jordan Lee, Brian Karlberg, Jasleen Grewal, Vincenzo Lagani, Bahar Tercan, Verena Friedl, Toshinori Hinoue, Vladislav Uzunangelov, Lindsay Westlake, Xavier Loinaz, Ina Felau, Peggy I. Wang, Anab Kemal, Rory Johnson, Ilya Shmulevich, Alexander J. Lazar, Ioannis Tsamardinos, Katherine A. Hoadley, A. Gordon Robertson, Theo Knijnenburg, Christopher C. Benz, Joshua M. Stuart, Jean C. Zenklusen, Andrew D. Cherniack, Peter W. Laird

    出版 2025
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  11. 11
    A community effort to create standards for evaluating tumor subclonal reconstruction

    A community effort to create standards for evaluating tumor subclonal reconstruction 由 Adriana Salcedo, Maxime Tarabichi, Shadrielle M. G. Espiritu, Amit G. Deshwar, Matei David, Nathan M. Wilson, Stefan C. Dentro, Jeff Wintersinger, Lydia Liu, Minjeong Ko, Srinivasan Sivanandan, Hongjiu Zhang, Kaiyi Zhu, Tai-Hsien Ou Yang, John Chilton, Alex Buchanan, Christopher M. Lalansingh, Christine P’ng, Catalina Anghel, Imaad Umar, Bernard Lo, William Y. Zou, Jared T. Simpson, Joshua M. Stuart, Dimitris Anastassiou, Yuanfang Guan, Adam D. Ewing, Kyle Ellrott, David C. Wedge, Quaid Morris, Peter Van Loo, Paul C. Boutros

    出版 2020
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  12. 12
    A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer

    A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer 由 Alex H. Wagner, Brian Walsh, Georgia Mayfield, David Tamborero, Dmitriy Sonkin, Kilannin Krysiak, Jordi Deu-Pons, Ryan P. Duren, Jianjiong Gao, Julie A. McMurry, Sara E. Patterson, Catherine Del Vecchio Fitz, Beth A. Pitel, Uğur Sezerman, Kyle Ellrott, Jeremy L. Warner, Damian Rieke, Tero Aittokallio, Ethan Cerami, Deborah Ritter, Lynn M. Schriml, Robert R. Freimuth, Melissa Haendel, Gordana Raca, Subha Madhavan, Michael Baudis, J. Beckmann, Rodrigo Dienstmann, Debyani Chakravarty, Xuan Shirley Li, Susan M. Mockus, Olivier Elemento, Nikolaus Schultz, Núria López-Bigas, Mark Lawler, Jeremy Goecks, Malachi Griffith, Obi L. Griffith, Adam A. Margolin

    出版 2020
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  13. 13
    Structure of the γ-<scp>D</scp>-glutamyl-<scp>L</scp>-diamino acid endopeptidase YkfC from<i>Bacillus cereus</i>in complex with<scp>L</scp>-Ala-γ-<scp>D</scp>-Glu: insights into substrate recognition by NlpC/P60 cysteine peptidases

    Structure of the γ-<scp>D</scp>-glutamyl-<scp>L</scp>-diamino acid endopeptidase YkfC from<i>Bacillus cereus</i>in complex with<scp>L</scp>-Ala-γ-<scp>D</scp>-Glu: insights into su... 由 Qingping Xu, Polat Abdubek, Tamara Astakhova, Herbert L. Axelrod, Constantina Bakolitsa, Xiaohui Cai, Dennis Carlton, Connie Chen, Hsiu‐Ju Chiu, Michelle Chiu, Thomas Clayton, Debanu Das, Marc C. Deller, Lian Duan, Kyle Ellrott, Carol L. Farr, Julie Feuerhelm, Joanna C. Grant, Anna Grzechnik, Gye Won Han, Lukasz Jaroszewski, Kevin K. Jin, Heath E. Klock, Mark W. Knuth, Piotr Koźbiał, Sanjeev Krishna, Abhinav Kumar, W.W.Y. Lam, David Marciano, Mitchell D. Miller, Andrew T. Morse, Edward Nigoghossian, Amanda Nopakun, Linda Okach, Christina Puckett, Ron Reyes, Henry J. Tien, Christine B. Trame, Henry van den Bedem, Dana Weekes, Tiffany Wooten, Andrew Yeh, Keith O. Hodgson, John Wooley, Marc‐André Elsliger, Ashley M. Deacon, Adam Godzik, Scott A. Lesley, Ian A. Wilson

    出版 2010
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  14. 14
    Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples

    Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples 由 Matthew H. Bailey, William U. Meyerson, Lewis Jonathan Dursi, Liang-Bo Wang, Guanlan Dong, Wen-Wei Liang, Amila Weerasinghe, Shantao Li, Yize Li, Sean Kelso, Rehan Akbani, Pavana Anur, Matthew H. Bailey, Alex Buchanan, Kami Chiotti, Kyle R. Covington, Allison Creason, Li Ding, Kyle Ellrott, Yu Fan, Steven M. Foltz, Gad Getz, Walker Hale, David Haussler, Julian M. Hess, Carolyn M. Hutter, Cyriac Kandoth, L. Sylvia, Melpomeni Kasapi, Dave Larson, Ignaty Leshchiner, John Letaw, Singer Ma, Michael D. McLellan, Yifei Men, Gordon B. Mills, Beifang Niu, Myron Peto, Amie Radenbaugh, Sheila M. Reynolds, Gordon Saksena, Heidi J. Sofia, Chip Stewart, Adam J. Struck, Joshua M. Stuart, Wenyi Wang, John N. Weinstein, David A. Wheeler, Christopher K. Wong, Xi Liu, Kai Ye, Matthew H. Bailey, Beifang Niu, Matthias Bieg, Paul C. Boutros, Ivo Buchhalter, Adam P. Butler, Ken Chen, Zechen Chong, Li Ding, Oliver Drechsel, Lewis Jonathan Dursi, Roland Eils, Kyle Ellrott, Shadrielle M. G. Espiritu, Yu Fan, Robert S. Fulton, Shengjie Gao, Josep L. L. Gelpi, Mark Gerstein, Gad Getz, Santiago González, Marta Gut, Faraz Hach, Michael C. Heinold, Julian M. Hess, Jonathan Hinton, Taobo Hu, Vincent Huang, Yi Huang, Barbara Hutter, David Jones, Jongsun Jung, Natalie Jäger, Hyung‐Lae Kim, Kortine Kleinheinz, Sushant Kumar, Yogesh Kumar, Christopher M. Lalansingh, Ignaty Leshchiner, Ivica Letunić, Dimitri Livitz, Z. Eric, Yosef E. Maruvka, R. Jay Mashl, Michael D. McLellan, Andrew Menzies, Ana Milovanovic, Morten Muhlig Nielsen, Stephan Ossowski

    出版 2020
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  15. 15
    Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines

    Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines 由 Kyle Ellrott, Matthew H. Bailey, Gordon Saksena, Kyle R. Covington, Cyriac Kandoth, Chip Stewart, Julian M. Hess, Singer Ma, Kami Chiotti, Michael D. McLellan, Heidi J. Sofia, Carolyn Hutter, Gad Getz, David A. Wheeler, Li Ding, Rory Johnson, John A. Demchok, Ina Felau, Melpomeni Kasapi, Martin L. Ferguson, Carolyn M. Hutter, Heidi J. Sofia, Roy Tarnuzzer, Zhining Wang, Liming Yang, Jean C. Zenklusen, Jiashan Zhang, Sudha Chudamani, Jia Liu, Laxmi Lolla, Rashi Naresh, Todd Pihl, Qiang Sun, Yunhu Wan, Ye Wu, Juok Cho, Timothy Defreitas, Scott Frazer, Nils Gehlenborg, Gad Getz, David I. Heiman, Jaegil Kim, Michael S. Lawrence, Pei Lin, Thomas J. Giordano, Michael S. Noble, Gordon Saksena, Doug Voet, Hailei Zhang, Brady Bernard, Nyasha Chambwe, Varsha Dhankani, Theo Knijnenburg, Roger Kramer, Kalle Leinonen, Yuexin Liu, Michael I. Miller, Sheila M. Reynolds, Ilya Shmulevich, Vésteinn Thórsson, Wei Zhang, Rehan Akbani, Bradley M. Broom, Apurva M. Hegde, Zhenlin Ju, Rupa S. Kanchi, Anil Korkut, Jun Li, Han Liang, Shiyun Ling, Wenbin Liu, Yiling Lu, Gordon B. Mills, Kwok-Shing Ng, Arvind Rao, Michaël Ryan, Jing Wang, John N. Weinstein, Jiexin Zhang, Adam Abeshouse, Joshua Armenia, Debyani Chakravarty, Walid K. Chatila, Ino de Bruijn, Galen F. Gao, Benjamin E. Gross, Zachary Heins, Ritika Kundra, Konnor La, Marc Ladanyi, Augustin Luna, Moriah G. Nissan, Angelica Ochoa, Sarah Phillips, Ed Reznik, Francisco Sánchez-Vega, Chris Sander, Nikolaus Schultz, Robert P. Sheridan, S. Onur Sumer

    出版 2018
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  16. 16
    Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space

    Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space 由 Michael C. Schatz, Anthony Philippakis, Enis Afgan, Eric Banks, Vincent J. Carey, Robert J. Carroll, Alessandro Culotti, Kyle Ellrott, Jeremy Goecks, Robert L. Grossman, Ira M. Hall, Kasper D. Hansen, Jonathan Lawson, Jeffrey T. Leek, Anne O’Donnell‐Luria, Stephen Mosher, Martin Morgan, Anton Nekrutenko, Brian D. O’Connor, Kevin Osborn, Benedict Paten, Candace Patterson, Frederick J. Tan, Casey Overby Taylor, Jennifer Vessio, Levi Waldron, Ting Wang, Kristin Wuichet, Alexander Baumann, Andrew Rula, Anton Kovalsy, C. Bernard, Derek Caetano-Anollés, Géraldine A. Van der Auwera, Justin Canas, K. Ümit Yüksel, Kate Herman, Megan Taylor, Marianie Simeon, Michaël Baumann, Qi Wang, Robert Title, Ruchi Munshi, Sushma Chaluvadi, Valerie B Reeves, William Disman, Salin Thomas, Allie Hajian, Elizabeth Kiernan, Namrata Gupta, Trish Vosburg, Ludwig Geistlinger, Marcel Ramos, Sehyun Oh, Dave Rogers, Frances McDade, Mim Hastie, Nitesh Turaga, Alexander Ostrovsky, Alexandru Mahmoud, Dannon Baker, Dave Clements, Katherine E.L. Cox, Keith Suderman, Nataliya Kucher, Sergey Golitsynskiy, Samantha Zarate, Sarah J. Wheelan, Kai Kammers, Ana Stevens, Carolyn M. Hutter, Christopher Wellington, Elena M. Ghanaim, Ken Wiley, Shurjo K. Sen, Valentina Di Francesco, Deni s Yuen, Brian Walsh, Luke Sargent, Vahid Jalili, John Chilton, Lori Shepherd, Benjamin J. Stubbs, Ash O’Farrell, Benton A. Vizzier, Charles Overbeck, Charles Reid, David Steinberg, Elizabeth A. Sheets, Julian Lucas, Lon Blauvelt, Louise Cabansay, Noah Warren, Brian Hannafious, Tim Harris, Radhika Reddy, Eric S. Torstenson, M. Katie Banasiewicz, Haley Abel, Jason Walker

    出版 2022
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  17. 17
    GA4GH: International policies and standards for data sharing across genomic research and healthcare

    GA4GH: International policies and standards for data sharing across genomic research and healthcare 由 Heidi L. Rehm, Angela Page, Lindsay Smith, Jeremy Adams, Gil Alterovitz, Lawrence Babb, Maxmillian P. Barkley, Michael Baudis, Michael J. S. Beauvais, Tim Beck, J. Beckmann, Sergi Beltrán, David L. Bernick, Alexander Bernier, James Bonfield, Tiffany Boughtwood, Guillaume Bourque, Sarion R. Bowers, Anthony J. Brookes, Michael Brudno, Matthew Brush, David Bujold, Tony Burdett, Orion J. Buske, Moran N. Cabili, Daniel Cameron, Robert J. Carroll, Esmeralda Casas-Silva, Debyani Chakravarty, Bimal P. Chaudhari, Shu Hui Chen, J. Michael Cherry, Justina Chung, Melissa Cline, Hayley Clissold, Robert Cook‐Deegan, Mélanie Courtot, Fiona Cunningham, Miro Cupak, Robert M. Davies, Danielle Denisko, Megan Doerr, Lena Dolman, Edward S. Dove, Lewis Jonathan Dursi, Stephanie O. M. Dyke, James A. Eddy, Karen Eilbeck, Kyle Ellrott, Susan Fairley, Khalid A. Fakhro, Helen V. Firth, Michael S. Fitzsimons, Marc Fiume, Paul Flicek, Ian Fore, Mallory Freeberg, Robert R. Freimuth, Lauren A. Fromont, Jonathan Fuerth, Clara Gaff, Weiniu Gan, Elena M. Ghanaim, David Glazer, Robert C. Green, Malachi Griffith, Obi L. Griffith, Robert L. Grossman, Tudor Groza, Jaime M. Guidry Auvil, Roderic Guigó, Dipayan Gupta, Melissa Haendel, Ada Hamosh, David Hansen, Reece K. Hart, Dean M. Hartley, David Haussler, Rachele Hendricks‐Sturrup, Calvin Wai-Loon Ho, Ashley E. Hobb, Michael M. Hoffman, Oliver Hofmann, Petr Holub, Jacob Shujui Hsu, Jean‐Pierre Hubaux, Sarah Hunt, Ammar Husami, Julius O.B. Jacobsen, Saumya S. Jamuar, Elizabeth Janes, Francis Jeanson, Aina Jené, Amber L. Johns, Yann Joly, Steven J.M. Jones, Alexander Kanitz, Yoshihiro Kato, Thomas Keane, Kristina Kekesi-Lafrance

    出版 2021
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