检索结果 - Koon‐Kiu Yan

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  1. 1
    Analysis of diverse regulatory networks in a hierarchical context shows consistent tendencies for collaboration in the middle levels

    Analysis of diverse regulatory networks in a hierarchical context shows consistent tendencies for collaboration in the middle levels 由 Nitin Bhardwaj, Koon‐Kiu Yan, Mark Gerstein

    出版 2010
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  2. 2
    MrTADFinder: A network modularity based approach to identify topologically associating domains in multiple resolutions

    MrTADFinder: A network modularity based approach to identify topologically associating domains in multiple resolutions 由 Koon‐Kiu Yan, Shaoke Lou, Mark Gerstein

    出版 2017
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  3. 3
    Improved Reconstruction of In Silico Gene Regulatory Networks by Integrating Knockout and Perturbation Data

    Improved Reconstruction of In Silico Gene Regulatory Networks by Integrating Knockout and Perturbation Data 由 Kevin Y. Yip, Roger P. Alexander, Koon‐Kiu Yan, Mark Gerstein

    出版 2010
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  4. 4
    Comparing genomes to computer operating systems in terms of the topology and evolution of their regulatory control networks

    Comparing genomes to computer operating systems in terms of the topology and evolution of their regulatory control networks 由 Koon‐Kiu Yan, Gang Fang, Nitin Bhardwaj, Roger P. Alexander, Mark Gerstein

    出版 2010
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  5. 5
    OrthoClust: an orthology-based network framework for clustering data across multiple species

    OrthoClust: an orthology-based network framework for clustering data across multiple species 由 Koon‐Kiu Yan, Daifeng Wang, Joel Rozowsky, Henry Zheng, Chao Cheng, Mark Gerstein

    出版 2014
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  6. 6
    HiC-spector: a matrix library for spectral and reproducibility analysis of Hi-C contact maps

    HiC-spector: a matrix library for spectral and reproducibility analysis of Hi-C contact maps 由 Koon‐Kiu Yan, Galip Gürkan Yardımcı, Chengfei Yan, William Stafford Noble, Mark Gerstein

    出版 2017
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  7. 7
    Network Approaches for Dissecting the Immune System

    Network Approaches for Dissecting the Immune System 由 Hao Shi, Koon‐Kiu Yan, Liang Ding, Chenxi Qian, Hongbo Chi, Jiyang Yu

    出版 2020
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  8. 8
    A statistical framework for modeling gene expression using chromatin features and application to modENCODE datasets

    A statistical framework for modeling gene expression using chromatin features and application to modENCODE datasets 由 Chao Cheng, Koon‐Kiu Yan, Kevin Y. Yip, Joel Rozowsky, Roger P. Alexander, Chong Shou, Mark Gerstein

    出版 2011
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  9. 9
    Measuring the Evolutionary Rewiring of Biological Networks

    Measuring the Evolutionary Rewiring of Biological Networks 由 Chong Shou, Nitin Bhardwaj, Hugo Y. K. Lam, Koon‐Kiu Yan, Philip M. Kim, M Snyder, Mark Gerstein

    出版 2011
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  10. 10
    Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data

    Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data 由 Chao Cheng, Koon‐Kiu Yan, Woochang Hwang, Jiang Qian, Nitin Bhardwaj, Joel Rozowsky, Zhi John Lu, Wei Niu, Pedro Alves, Masaomi Kato, M Snyder, Mark Gerstein

    出版 2011
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  11. 11
    Spotiphy enables single-cell spatial whole transcriptomics across an entire section

    Spotiphy enables single-cell spatial whole transcriptomics across an entire section 由 Jiyuan Yang, Ziqian Zheng, Yun Jiao, Kaiwen Yu, Sheetal Bhatara, Xu Yang, Sivaraman Natarajan, Jiahui Zhang, Qingfei Pan, John Easton, Koon‐Kiu Yan, Junmin Peng, Kaibo Liu, Jiyang Yu

    出版 2025
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  12. 12
    Understanding transcriptional regulation by integrative analysis of transcription factor binding data

    Understanding transcriptional regulation by integrative analysis of transcription factor binding data 由 Chao Cheng, Roger P. Alexander, Renqiang Min, Jing Leng, Kevin Y. Yip, Joel Rozowsky, Koon‐Kiu Yan, Xianjun Dong, Sarah Djebali, Yijun Ruan, Carrie Davis, Piero Carninci, Timo Lassman, T Gingeras, Roderic Guigó, Ewan Birney, Zhiping Weng, M Snyder, Mark Gerstein

    出版 2012
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  13. 13
    NetBID2 provides comprehensive hidden driver analysis

    NetBID2 provides comprehensive hidden driver analysis 由 Xinran Dong, Liang Ding, Andrew Thrasher, Xinge Wang, Jingjing Liu, Qingfei Pan, Jordan Rash, Yogesh Dhungana, Xu Yang, Isabel Risch, Yuxin Li, Lei Yan, Michael Rusch, Clay McLeod, Koon‐Kiu Yan, Junmin Peng, Hongbo Chi, Jinghui Zhang, Jiyang Yu

    出版 2023
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  14. 14
    Measuring the reproducibility and quality of Hi-C data

    Measuring the reproducibility and quality of Hi-C data 由 Galip Gürkan Yardımcı, Hakan Özadam, Michael Sauria, Oana Ursu, Koon‐Kiu Yan, Tao Yang, Abhijit Chakraborty, Arya Kaul, Bryan R. Lajoie, Fan Song, Ye Zhan, Ferhat Ay, Mark Gerstein, Anshul Kundaje, Qunhua Li, James Taylor, Feng Yue, Job Dekker, William Stafford Noble

    出版 2019
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  15. 15
    Supervised enhancer prediction with epigenetic pattern recognition and targeted validation

    Supervised enhancer prediction with epigenetic pattern recognition and targeted validation 由 Anurag Sethi, Mengting Gu, Emrah Gümüşgöz, Landon L. Chan, Koon‐Kiu Yan, Joel Rozowsky, Iros Barozzi, Veena Afzal, Jennifer A. Akiyama, Ingrid Plajzer-Frick, Chengfei Yan, Catherine S. Novak, Momoe Kato, Tyler H. Garvin, Quan Pham, Anne Harrington, Brandon J. Mannion, Elizabeth A. Lee, Y. Fukuda, Axel Visel, Diane E. Dickel, Kevin Y. Yip, Richard E. Sutton, L Pennacchio, Mark Gerstein

    出版 2020
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  16. 16
    CXCR6 orchestrates brain CD8+ T cell residency and limits mouse Alzheimer’s disease pathology

    CXCR6 orchestrates brain CD8+ T cell residency and limits mouse Alzheimer’s disease pathology 由 Wei Su, Jordy Saravia, Isabel Risch, Sherri L. Rankin, Cliff Guy, Nicole M. Chapman, Hao Shi, Yu Sun, Anil KC, Wei Li, Hongling Huang, Seon Ah Lim, Haoran Hu, Yan Wang, Danting Liu, Yun Jiao, Ping‐Chung Chen, Hadeer Soliman, Koon‐Kiu Yan, Jonathan Zhang, Peter Vogel, Xueyan Liu, Geidy E. Serrano, Thomas G. Beach, Jiyang Yu, Junmin Peng, Hongbo Chi

    出版 2023
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  17. 17
    The ModERN Resource: Genome-Wide Binding Profiles for Hundreds of<i>Drosophila</i>and<i>Caenorhabditis elegans</i>Transcription Factors

    The ModERN Resource: Genome-Wide Binding Profiles for Hundreds of<i>Drosophila</i>and<i>Caenorhabditis elegans</i>Transcription Factors 由 Michelle Kudron, Alec Victorsen, Louis Gevirtzman, LaDeana Hillier, William W. Fisher, Dionne Vafeados, Matt Kirkey, Ann S. Hammonds, Jeffery Gersch, Haneen Ammouri, Martha Wall, Jennifer Moran, David L. Steffen, Matt Szynkarek, Samantha Seabrook-Sturgis, Nader Jameel, Madhura Kadaba, Jaeda Patton, Robert Terrell, Mitch Corson, Timothy Durham, Soo Hyung Park, Swapna Samanta, Han Mei, Jinrui Xu, Koon‐Kiu Yan, S Celniker, Kevin P. White, Lijia Ma, Mark Gerstein, V Reinke, R Waterston

    出版 2017
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  18. 18
    Comparative analysis of regulatory information and circuits across distant species

    Comparative analysis of regulatory information and circuits across distant species 由 Alan P. Boyle, Carlos L. Araya, Cathleen Brdlik, Philip Cayting, Chao Cheng, Yong Cheng, Kathryn E. Gardner, LaDeana Hillier, J. Janette, Lixia Jiang, Dionna M. Kasper, Trupti Kawli, Pouya Kheradpour, Anshul Kundaje, Jingyi Jessica Li, Lijia Ma, Wei Niu, E. Jay Rehm, Joel Rozowsky, Matthew Slattery, Rebecca Spokony, Robert Terrell, Dionne Vafeados, Daifeng Wang, Peter Weisdepp, Yi-Chieh Wu, Dan Xie, Koon-Kiu Yan, Elise A. Feingold, Peter J. Good, Michael J. Pazin, Haiyan Huang, Peter J. Bickel, Steven E. Brenner, V Reinke, R Waterston, Mark Gerstein, Kevin P. White, Manolis Kellis, M Snyder

    出版 2014
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  19. 19
    Lentiviral Gene Therapy with Low Dose Busulfan for Infants with X-SCID Results in the Development of a Functional Normal Immune System: Interim Results of an Ongoing Phase I/II Clinical Study

    Lentiviral Gene Therapy with Low Dose Busulfan for Infants with X-SCID Results in the Development of a Functional Normal Immune System: Interim Results of an Ongoing Phase I/II Cli... 由 Ewelina Mamcarz, Sheng Zhou, Timothy Lockey, Shannon Boi, Koon‐Kiu Yan, Shane J. Cross, Guolian Kang, Zhijun Ma, Jose Condori, Jolanta Dowdy, Jean‐Yves Métais, Deanna Langfitt, Brandon M. Triplett, Chen Li, Xiwen Zhao, Gabriela Marón, Sneha Suresh, Juan Carlos Aldave Becerra, Joseph A. Church, Elif Dokmeci, James T. Love, Hedi van der Watt, Ana Carolina da Matta Ain, Christa Krupski, Jiyang Yu, Lance E. Palmer, William E. Janssen, Suk See De Ravin, Mitchell J. Weiss, Ben Youngblood, Janel Long-Boyle, Michael M. Meagher, Harry L. Malech, Jennifer M. Puck, Morton J. Cowan, Stephen Gottschalk

    出版 2019
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  20. 20
    Architecture of the human regulatory network derived from ENCODE data

    Architecture of the human regulatory network derived from ENCODE data 由 Mark Gerstein, Anshul Kundaje, Manoj Hariharan, Stephen G. Landt, Koon‐Kiu Yan, Chao Cheng, Xinmeng Jasmine Mu, Ekta Khurana, Joel Rozowsky, Roger P. Alexander, Renqiang Min, Pedro Alves, Alexej Abyzov, Nick Addleman, Nitin Bhardwaj, Alan P. Boyle, Philip Cayting, Alexandra Charos, David Z. Chen, Yong Cheng, Declan Clarke, Catharine Eastman, Ghia Euskirchen, Seth Frietze, Yao Fu, Jason Gertz, Fabian Grubert, Arif Harmanci, Preti Jain, Maya Kasowski, Phil Lacroute, Jing Leng, Lian Jin, Hannah Monahan, Henriette O’Geen, Zhengqing Ouyang, E. Christopher Partridge, Dorrelyn Patacsil, Florencia Pauli, Debasish Raha, Lucı́a Ramı́rez, Timothy E. Reddy, Brian D. Reed, Minyi Shi, Teri Slifer, Jing Wang, Linfeng Wu, Xinqiong Yang, Kevin Y. Yip, Gili Zilberman-Schapira, Serafim Batzoglou, Arend Sidow, Peggy Farnham, R Myers, Sherman M. Weissman, M Snyder

    出版 2012
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