Результаты поиска - Kelly Cochran

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  1. 1
    Domain-adaptive neural networks improve cross-species prediction of transcription factor binding

    Domain-adaptive neural networks improve cross-species prediction of transcription factor binding по Kelly Cochran, Divyanshi Srivastava, Avanti Shrikumar, Akshay Balsubramani, Ross C. Hardison, Anshul Kundaje, Shaun Mahony

    Опубликовано 2022
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    Artigo
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  2. 2
    Dissecting the cis-regulatory syntax of transcription initiation with deep learning

    Dissecting the cis-regulatory syntax of transcription initiation with deep learning по Kelly Cochran, Melody Yin, Anika Mantripragada, Jacob Schreiber, Georgi K. Marinov, Sagar Shah, Haiyuan Yu, John T. Lis, Anshul Kundaje

    Опубликовано 2024
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  3. 3
    Rewriting regulatory DNA to dissect and reprogram gene expression

    Rewriting regulatory DNA to dissect and reprogram gene expression по Gabriella E. Martyn, Michael T. Montgomery, H. Spencer Jones, Katherine Guo, Benjamin R. Doughty, Johannes Linder, Ziwei Chen, Kelly Cochran, Kathryn A Lawrence, Glen Munson, Anusri Pampari, Charles P. Fulco, David R. Kelley, Eric S. Lander, Anshul Kundaje, J Engreitz

    Опубликовано 2023
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  4. 4
    Rewriting regulatory DNA to dissect and reprogram gene expression

    Rewriting regulatory DNA to dissect and reprogram gene expression по Gabriella E. Martyn, Michael T. Montgomery, H. Spencer Jones, Katherine Guo, Benjamin R. Doughty, Johannes Linder, Deepa Bisht, Fan Xia, Xiangmeng S. Cai, Ziwei Chen, Kelly Cochran, Kathryn A Lawrence, Glen Munson, Anusri Pampari, Charles P. Fulco, Nidhi Sahni, David R. Kelley, Eric S. Lander, Anshul Kundaje, J Engreitz

    Опубликовано 2025
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    Artigo
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  5. 5
    Comprehensive identification of mRNA isoforms reveals the diversity of neural cell-surface molecules with roles in retinal development and disease

    Comprehensive identification of mRNA isoforms reveals the diversity of neural cell-surface molecules with roles in retinal development and disease по Thomas A. Ray, Kelly Cochran, Christopher Kozlowski, Jingjing Wang, Graham Alexander, Martha A. Cady, William J. Spencer, Philip A. Ruzycki, Brian S. Clark, Annelies Laeremans, Ming-Xiao He, Xiaoming Wang, Emily Park, Ying Hao, Alessandro Iannaccone, Gary Hu, Olivier Fédrigo, Nikolai P. Skiba, Vadim Y. Arshavsky, Jeremy N. Kay

    Опубликовано 2020
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    Artigo
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  6. 6
    GENCODE: massively expanding the lncRNA catalog through capture long-read RNA sequencing

    GENCODE: massively expanding the lncRNA catalog through capture long-read RNA sequencing по Gazaldeep Kaur, Tamara Perteghella, Sílvia Carbonell Sala, José M. González, Toby Hunt, Tomasz Mądry, Irwin Jungreis, Carme Arnan, Julien Lagarde, Beatrice Borsari, Cristina Sisu, Yunzhe Jiang, Ruth Bennett, Andrew Berry, Daniel Cerdán-Vélez, Kelly Cochran, Covadonga Vara, Claire Davidson, Sarah Donaldson, Cagatay Dursun, Silvia González-López, Sasti Gopal Das, Matthew P. Hardy, Zoe Hollis, Mike Kay, José Carlos Montañés, Pengyu Ni, Ramil Nurtdinov, Emilio Palumbo, Carlos Pulido-Quetglas, Marie‐Marthe Suner, X. Yu, Dingyao Zhang, Jane Loveland, M. Mar Albà, Mark Diekhans, Andrea Tanzer, Jonathan M. Mudge, Paul Flicek, Fergal J. Martin, Mark Gerstein, M. Kellis, Anshul Kundaje, Benedict Paten, Michael L. Tress, Rory Johnson, Barbara Uszczyńska-Ratajczak, Adam Frankish, Roderic Guigó

    Опубликовано 2024
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  7. 7
    GENCODE 2025: reference gene annotation for human and mouse

    GENCODE 2025: reference gene annotation for human and mouse по Jonathan M. Mudge, Sílvia Carbonell Sala, Mark Diekhans, José M. González, Toby Hunt, Irwin Jungreis, Jane Loveland, Carme Arnan, If Barnes, Ruth Bennett, Andrew Berry, Alexandra Bignell, Daniel Cerdán-Vélez, Kelly Cochran, Lucas T Cortés, Claire Davidson, Sarah Donaldson, Cagatay Dursun, Reham Fatima, Matthew P. Hardy, Prajna Hebbar, Zoe Hollis, Benjamin T. James, Yunzhe Jiang, Rory Johnson, Gazaldeep Kaur, Mike Kay, Riley J. Mangan, Miguel Maquedano, Laura Martínez Gómez, Nourhen Mathlouthi, Ryan Merritt, Pengyu Ni, Emilio Palumbo, Tamara Perteghella, Fernando Campo del Pozo, Shriya Raj, Cristina Sisu, Emily Steed, Dulika Sumathipala, Marie‐Marthe Suner, Barbara Uszczyńska-Ratajczak, Elizabeth Wass, Yucheng Yang, Dingyao Zhang, ROBERT FINN, Mark Gerstein, Roderic Guigó, Tim Hubbard, M Kellis, Anshul Kundaje, Benedict Paten, Michael L. Tress, Ewan Birney, Fergal J. Martin, Adam Frankish

    Опубликовано 2024
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    Artigo
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