Ohcanbohtosat - Kellis, Manolis

The changing face of genomics Dahkki Kellis, Manolis

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Discovery and characterization of chromatin states for systematic annotation of the human genome Dahkki Ernst, Jason, Kellis, Manolis

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ChromHMM: automating chromatin state discovery and characterization Dahkki Ernst, Jason, Kellis, Manolis

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Interplay between chromatin state, regulator binding, and regulatory motifs in six human cell types Dahkki Ernst, Jason, Kellis, Manolis

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Systematic discovery and characterization of regulatory motifs in ENCODE TF binding experiments Dahkki Kheradpour, Pouya, Kellis, Manolis

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Large-scale epigenome imputation improves data quality and disease variant enrichment Dahkki Ernst, Jason, Kellis, Manolis

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Systematic chromatin state comparison of epigenomes associated with diverse properties including sex and tissue type Dahkki Yen, Angela, Kellis, Manolis

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Joint Bayesian inference of risk variants and tissue-specific epigenomic enrichments across multiple complex human diseases Dahkki Li, Yue, Kellis, Manolis

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Chromatin state discovery and genome annotation with ChromHMM Dahkki Ernst, Jason, Kellis, Manolis

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Large-scale discovery and validation of functional elements in the human genome Dahkki Bernstein, Bradley E, Kellis, Manolis

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Accurate gene-tree reconstruction by learning gene- and species-specific substitution rates across multiple complete genomes Dahkki Rasmussen, Matthew D., Kellis, Manolis

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Sequences to systems Dahkki Kellis, Manolis, Rinn, John L

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A Bayesian Approach for Fast and Accurate Gene Tree Reconstruction Dahkki Rasmussen, Matthew D., Kellis, Manolis

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HaploReg: a resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants Dahkki Ward, Lucas D., Kellis, Manolis

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Unified modeling of gene duplication, loss, and coalescence using a locus tree Dahkki Rasmussen, Matthew D., Kellis, Manolis

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Interpreting non-coding variation in complex disease genetics Dahkki Ward, Lucas D., Kellis, Manolis

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Evidence of abundant purifying selection in humans for recently-acquired regulatory functions Dahkki Ward, Lucas D., Kellis, Manolis

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RESPONSE to Comment (Green) on "Evidence of abundant purifying selection in humans for recently-acquired regulatory functions" 1225057 Ward Dahkki Ward, Lucas D., Kellis, Manolis

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CoCoA-diff: counterfactual inference for single-cell gene expression analysis Dahkki Park, Yongjin P., Kellis, Manolis

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SubMAP: Aligning Metabolic Pathways with Subnetwork Mappings Dahkki Ay, Ferhat, Kellis, Manolis, Kahveci, Tamer

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