Ohcanbohtosat - Kaur Alasoo

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  1. 1
    Computational biology: deep learning

    Computational biology: deep learning Dahkki William Jones, Kaur Alasoo, Dmytro Fishman, Leopold Parts

    Almmustuhtton 2017
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  2. 2
    Co-expression analysis reveals interpretable gene modules controlled by trans-acting genetic variants

    Co-expression analysis reveals interpretable gene modules controlled by trans-acting genetic variants Dahkki Liis Kolberg, Nurlan Kerimov, Hedi Peterson, Kaur Alasoo

    Almmustuhtton 2020
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  3. 3
    Genetic effects on promoter usage are highly context-specific and contribute to complex traits

    Genetic effects on promoter usage are highly context-specific and contribute to complex traits Dahkki Kaur Alasoo, Julia Rodrigues, John Danesh, Daniel F. Freitag, Dirk S. Paul, Daniel J. Gaffney

    Almmustuhtton 2019
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  4. 4
    Induced Pluripotent Stem Cell Derived Macrophages as a Cellular System to Study Salmonella and Other Pathogens

    Induced Pluripotent Stem Cell Derived Macrophages as a Cellular System to Study Salmonella and Other Pathogens Dahkki Christine Hale, Amy Yeung, David Goulding, Derek Pickard, Kaur Alasoo, Fiona Powrie, Gordon Dougan, Subhankar Mukhopadhyay

    Almmustuhtton 2015
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  5. 5
    Transcriptional profiling of macrophages derived from monocytes and iPS cells identifies a conserved response to LPS and novel alternative transcription

    Transcriptional profiling of macrophages derived from monocytes and iPS cells identifies a conserved response to LPS and novel alternative transcription Dahkki Kaur Alasoo, Fernando O. Martínez, Christine Hale, Siamon Gordon, Fiona Powrie, Gordon Dougan, Subhankar Mukhopadhyay, Daniel J. Gaffney

    Almmustuhtton 2015
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  6. 6
    Shared genetic effects on chromatin and gene expression indicate a role for enhancer priming in immune response

    Shared genetic effects on chromatin and gene expression indicate a role for enhancer priming in immune response Dahkki Kaur Alasoo, Julia Rodrigues, Subhankar Mukhopadhyay, Andrew Knights, Alice Mann, Kousik Kundu, Christine Hale, Gordon Dougan, Daniel J. Gaffney

    Almmustuhtton 2018
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  7. 7
    Skin Colonization with S. aureus Can Lead to Increased NLRP1 Inflammasome Activation in Patients with Atopic Dermatitis

    Skin Colonization with S. aureus Can Lead to Increased NLRP1 Inflammasome Activation in Patients with Atopic Dermatitis Dahkki Helen Vaher, Kristiina Kingo, Peep Kolberg, Martin Pook, Liisi Raam, Anet Laanesoo, Anu Remm, Tanel Tenson, Kaur Alasoo, Ulrich Mrowietz, Stephan Weidinger, Külli Kingo, Ana Rebane

    Almmustuhtton 2023
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  8. 8
    ChromBPNet: bias factorized, base-resolution deep learning models of chromatin accessibility reveal cis-regulatory sequence syntax, transcription factor footprints and regulatory variants

    ChromBPNet: bias factorized, base-resolution deep learning models of chromatin accessibility reveal cis-regulatory sequence syntax, transcription factor footprints and regulatory v... Dahkki Anusri Pampari, Anna Shcherbina, Evgeny Z. Kvon, Michael Kosicki, Surag Nair, Soumya Kundu, Arwa S. Kathiria, Viviana I. Risca, Kristiina Kuningas, Kaur Alasoo, William J. Greenleaf, L Pennacchio, Anshul Kundaje

    Almmustuhtton 2024
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  9. 9
    eQTL Catalogue: a compendium of uniformly processed human gene expression and splicing QTLs

    eQTL Catalogue: a compendium of uniformly processed human gene expression and splicing QTLs Dahkki Nurlan Kerimov, James Hayhurst, Kateryna Peikova, Jonathan Manning, Peter Walter, Liis Kolberg, Marija Samoviča, Manoj Pandian Sakthivel, Ivan Kuzmin, Stephen J. Trevanion, Tony Burdett, Simon Jupp, Helen Parkinson, Irene Papatheodorou, Andrew Yates, Daniel R. Zerbino, Kaur Alasoo

    Almmustuhtton 2020
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  10. 10
    A compendium of uniformly processed human gene expression and splicing quantitative trait loci

    A compendium of uniformly processed human gene expression and splicing quantitative trait loci Dahkki Nurlan Kerimov, James Hayhurst, Kateryna Peikova, Jonathan Manning, Peter Walter, Liis Kolberg, Marija Samoviča, Manoj Pandian Sakthivel, Ivan Kuzmin, Stephen J. Trevanion, Tony Burdett, Simon Jupp, Helen Parkinson, Irene Papatheodorou, Andrew Yates, Daniel R. Zerbino, Kaur Alasoo

    Almmustuhtton 2021
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  11. 11
    Predicted mechanistic impacts of human protein missense variants

    Predicted mechanistic impacts of human protein missense variants Dahkki Jürgen Jänes, Marc Müller, Senthil Selvaraj, Diogo Manoel, James Stephenson, Catarina Gonçalves, Aleix Lafita, Benjamin J. Polacco, Kirsten Obernier, Kaur Alasoo, Manuel C. Lemos, Nevan J. Krogan, María Martin, Luís R. Saraiva, David F. Burke, Pedro Beltrão

    Almmustuhtton 2024
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  12. 12
    Molecular and functional variation in iPSC-derived sensory neurons

    Molecular and functional variation in iPSC-derived sensory neurons Dahkki Jeremy Schwartzentruber, Stefanie Foskolou, Helena Kilpinen, Julia Rodrigues, Kaur Alasoo, Andrew Knights, Minal Patel, Ângela Gonçalves, Rita Ferreira, Caroline Benn, Anna Wilbrey, Magda Bictash, Emma Impey, Lishuang Cao, Sergio Laínez, Alexandre Loucif, Paul J. Whiting, Alex Gutteridge, Daniel J. Gaffney

    Almmustuhtton 2017
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  13. 13
    Immune disease variants modulate gene expression in regulatory CD4+ T cells

    Immune disease variants modulate gene expression in regulatory CD4+ T cells Dahkki Lara Bossini‐Castillo, Dafni A. Glinos, Natalia Kunowska, Gosia Golda, Abigail Lamikanra, Michaela Spitzer, Blagoje Soskic, Eddie Cano-Gamez, Deborah J. Smyth, Claire Cattermole, Kaur Alasoo, Alice Mann, Kousik Kundu, Anna Lorenc, Nicole Soranzo, Ian Dunham, David J. Roberts, Gosia Trynka

    Almmustuhtton 2022
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  14. 14
    eQTL Catalogue 2023: New datasets, X chromosome QTLs, and improved detection and visualisation of transcript-level QTLs

    eQTL Catalogue 2023: New datasets, X chromosome QTLs, and improved detection and visualisation of transcript-level QTLs Dahkki Nurlan Kerimov, Ralf Tambets, James Hayhurst, Ida Rahu, Peep Kolberg, Uku Raudvere, Ivan Kuzmin, Anshika Chowdhary, Andreas Vija, Hans Teras, Masahiro Kanai, Jacob C. Ulirsch, Mina Ryten, John Hardy, Sebastian Guelfi, Daniah Trabzuni, Sarah Kim-Hellmuth, William Rayner, Hilary K. Finucane, Hedi Peterson, Abayomi Mosaku, Helen Parkinson, Kaur Alasoo

    Almmustuhtton 2023
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  15. 15
    Loss of IL-10 signaling in macrophages limits bacterial killing driven by prostaglandin E2

    Loss of IL-10 signaling in macrophages limits bacterial killing driven by prostaglandin E2 Dahkki Subhankar Mukhopadhyay, Eva Heinz, Immacolata Porreca, Kaur Alasoo, Amy Yeung, Huei-Ting Yang, Tobias Schwerd, Jessica L. Forbester, Christine Hale, Chukwuma A. Agu, Yoon Ha Choi, Julia Rodrigues, Melania Capitani, Luke Jostins-Dean, David Thomas, Simon Travis, Daniel J. Gaffney, William C. Skarnes, Nicholas R. Thomson, Holm H. Uhlig, Gordon Dougan, Fiona Powrie

    Almmustuhtton 2019
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  16. 16
    Insights from complex trait fine-mapping across diverse populations

    Insights from complex trait fine-mapping across diverse populations Dahkki Masahiro Kanai, Jacob C. Ulirsch, Juha Karjalainen, Mitja Kurki, Konrad J. Karczewski, Eric B. Fauman, Qingbo Wang, Hannah Jacobs, François Aguet, Kristin Ardlie, Nurlan Kerimov, Kaur Alasoo, Christian Benner, Kazuyoshi Ishigaki, Saori Sakaue, Steven K. Reilly, Yoichiro Kamatani, Koichi Matsuda, Aarno Palotie, Benjamin M. Neale, Ryan Tewhey, Pardis C. Sabeti, Yukinori Okada, Mark J. Daly, Hilary K. Finucane

    Almmustuhtton 2021
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  17. 17
    Common genetic variation drives molecular heterogeneity in human iPSCs

    Common genetic variation drives molecular heterogeneity in human iPSCs Dahkki Helena Kilpinen, Ângela Gonçalves, Andreas Leha, Vackar Afzal, Kaur Alasoo, Sofie Ashford, Sendu Bala, Dalila Bensaddek, Francesco Paolo Casale, Oliver J. Culley, Petr Danecek, Adam Faulconbridge, Peter W. Harrison, Annie Kathuria, Davis J. McCarthy, Shane McCarthy, Ruta Meleckyte, Yasin Memari, Nathalie Moens, Filipa Soares, Alice Mann, Ian Streeter, Chukwuma A. Agu, Alex Alderton, Andrew Nelson, Sarah Harper, Minal Patel, Alistair White, Sharad Patel, Laura Clarke, Reena Halai, Christopher M. Kirton, Anja Kolb‐Kokocinski, Philip L. Beales, Ewan Birney, Davide Danovi, Angus I. Lamond, Willem H. Ouwehand, Ludovic Vallier, Fiona M. Watt, Richard Durbin, Oliver Stegle, Daniel J. Gaffney

    Almmustuhtton 2017
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  18. 18
    FinnGen: Unique genetic insights from combining isolated population and national health register data

    FinnGen: Unique genetic insights from combining isolated population and national health register data Dahkki Mitja Kurki, Juha Karjalainen, Priit Palta, Timo P. Sipilä, Kati Kristiansson, Kati Donner, Mary Pat Reeve, Hannele Laivuori, Mervi Aavikko, Mari Kaunisto, Anu Loukola, Elisa Lahtela, Hannele Mattsson, Päivi Laiho, Pietro Della Briotta Parolo, Arto Lehistö, Masahiro Kanai, Nina Mars, Joel Rämö, Tuomo Kiiskinen, Henrike Heyne, Kumar Veerapen, Sina Rüeger, Susanna Lemmelä, Wei Zhou, Sanni Ruotsalainen, Kalle Pärn, Tero Hiekkalinna, Sami Koskelainen, Teemu Paajanen, Vincent Llorens, Javier Gracia‐Tabuenca, Harri Siirtola, Kadri Reis, Abdelrahman G. Elnahas, Katriina Aalto‐Setälä, Kaur Alasoo, Mikko Arvas, Kirsi Auro, Shameek Biswas, Argyro Bizaki-Vallaskangas, Olli Carpén, Chia‐Yen Chen, Oluwaseun Alexander Dada, Zhihao Ding, Margaret G. Ehm, Kari K. Eklund, Martti Färkkilâ, Hilary K. Finucane, Andrea Ganna, Awaisa Ghazal, Robert Graham, Eric Green, Antti Hakanen, Marco Hautalahti, Åsa K. Hedman, Mikko Hiltunen, Reetta Hinttala, Iiris Hovatta, Xinli Hu, Adriana Huertas‐Vázquez, Laura Huilaja, Julie Hunkapiller, Howard J. Jacob, Jan-Nygaard Jensen, Heikki Joensuu, Sally John, Valtteri Julkunen, Marc Jung, Juhani Junttila, Kai Kaarniranta, Mika Kähönen, Risto Kajanne, Lila Kallio, Reetta Kälviäinen, Jaakko Kaprio, Nurlan Kerimov, Johannes Kettunen, Elina Kilpeläinen, Terhi Kilpi, K. Klinger, Veli‐Matti Kosma, Teijo Kuopio, Venla Kurra, Triin Laisk, Jari A. Laukkanen, Nathan Lawless, Aoxing Liu, Simonne Longerich, Reedik Mägi, Johanna Mäkelä, Antti Mäkitie, Anders Mälarstig, Arto Mannermaa, Joseph Maranville, Athena Matakidou, Tuomo J Meretoja, Sahar V. Mozaffari, Mari Niemi, Marianna Niemi

    Almmustuhtton 2022
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  19. 19
    FinnGen provides genetic insights from a well-phenotyped isolated population

    FinnGen provides genetic insights from a well-phenotyped isolated population Dahkki Mitja Kurki, Juha Karjalainen, Priit Palta, Timo P. Sipilä, Kati Kristiansson, Kati Donner, Mary Pat Reeve, Hannele Laivuori, Mervi Aavikko, Mari Kaunisto, Anu Loukola, Elisa Lahtela, Hannele Mattsson, Päivi Laiho, Pietro Della Briotta Parolo, Arto Lehistö, Masahiro Kanai, Nina Mars, Joel Rämö, Tuomo Kiiskinen, Henrike Heyne, Kumar Veerapen, Sina Rüeger, Susanna Lemmelä, Wei Zhou, Sanni Ruotsalainen, Kalle Pärn, Tero Hiekkalinna, Sami Koskelainen, Teemu Paajanen, Vincent Llorens, Javier Gracia‐Tabuenca, Harri Siirtola, Kadri Reis, Abdelrahman G. Elnahas, Benjamin B. Sun, Christopher N. Foley, Katriina Aalto‐Setälä, Kaur Alasoo, Mikko Arvas, Kirsi Auro, Shameek Biswas, Argyro Bizaki-Vallaskangas, Olli Carpén, Chia‐Yen Chen, Oluwaseun Alexander Dada, Zhihao Ding, Margaret G. Ehm, Kari K. Eklund, Martti Färkkilâ, Hilary K. Finucane, Andrea Ganna, Awaisa Ghazal, Robert Graham, Eric M. Green, Antti Hakanen, Marco Hautalahti, Åsa K. Hedman, Mikko Hiltunen, Reetta Hinttala, Iiris Hovatta, Xinli Hu, Adriana Huertas‐Vázquez, Laura Huilaja, Julie Hunkapiller, Howard Jacob, Jan-Nygaard Jensen, Heikki Joensuu, Sally John, Valtteri Julkunen, Marc Jung, Juhani Junttila, Kai Kaarniranta, Mika Kähönen, Risto Kajanne, Lila Kallio, Reetta Kälviäinen, Jaakko Kaprio, Nurlan Kerimov, Johannes Kettunen, Elina Kilpeläinen, Terhi Kilpi, K. Klinger, Veli‐Matti Kosma, Teijo Kuopio, Venla Kurra, Triin Laisk, Jari A. Laukkanen, Nathan Lawless, Aoxing Liu, Simonne Longerich, Reedik Mägi, Johanna Mäkelä, Antti Mäkitie, Anders Mälarstig, Graham J. Mann, Joseph Maranville, Athena Matakidou, Tuomo J Meretoja, Sahar V. Mozaffari

    Almmustuhtton 2023
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