検索結果 - Kahles, André

MMR: a tool for read multi-mapper resolution 著者: Kahles, André, Behr, Jonas, Rätsch, Gunnar

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Excap: Maximization of Haplotypic Diversity of Linked Markers 著者: Kahles, André, Sarqume, Fahad, Savolainen, Peter, Arvestad, Lars

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SplAdder: identification, quantification and testing of alternative splicing events from RNA-Seq data 著者: Kahles, André, Ong, Cheng Soon, Zhong, Yi, Rätsch, Gunnar

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Topology-based sparsification of graph annotations 著者: Danciu, Daniel, Karasikov, Mikhail, Mustafa, Harun, Kahles, André, Rätsch, Gunnar

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MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples 著者: Behr, Jonas, Kahles, André, Zhong, Yi, Sreedharan, Vipin T., Drewe, Philipp, Rätsch, Gunnar

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Dynamic compression schemes for graph coloring 著者: Mustafa, Harun, Schilken, Ingo, Karasikov, Mikhail, Eickhoff, Carsten, Rätsch, Gunnar, Kahles, André

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Sparse Binary Relation Representations for Genome Graph Annotation 著者: Karasikov, Mikhail, Mustafa, Harun, Joudaki, Amir, Javadzadeh-no, Sara, Rätsch, Gunnar, Kahles, André

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Polypyrimidine Tract Binding Protein Homologs from Arabidopsis Are Key Regulators of Alternative Splicing with Implications in Fundamental Developmental Processes([W]) 著者: Rühl, Christina, Stauffer, Eva, Kahles, André, Wagner, Gabriele, Drechsel, Gabriele, Rätsch, Gunnar, Wachter, Andreas

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INTEGRATIVE GENOME-WIDE ANALYSIS OF THE DETERMINANTS OF RNA SPLICING IN KIDNEY RENAL CLEAR CELL CARCINOMA 著者: LEHMANN, KJONG-VAN, KAHLES, ANDRÉ, KANDOTH, CYRIAC, LEE, WILLIAM, SCHULTZ, NIKOLAUS, STEGLE, OLIVER, RÄTSCH, GUNNAR

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Accurate detection of differential RNA processing 著者: Drewe, Philipp, Stegle, Oliver, Hartmann, Lisa, Kahles, André, Bohnert, Regina, Wachter, Andreas, Borgwardt, Karsten, Rätsch, Gunnar

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Nonsense-Mediated Decay of Alternative Precursor mRNA Splicing Variants Is a Major Determinant of the Arabidopsis Steady State Transcriptome([C])([W]) 著者: Drechsel, Gabriele, Kahles, André, Kesarwani, Anil K., Stauffer, Eva, Behr, Jonas, Drewe, Philipp, Rätsch, Gunnar, Wachter, Andreas

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Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis 著者: Sreedharan, Vipin T., Schultheiss, Sebastian J., Jean, Géraldine, Kahles, André, Bohnert, Regina, Drewe, Philipp, Mudrakarta, Pramod, Görnitz, Nico, Zeller, Georg, Rätsch, Gunnar

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Oqtans: a multifunctional workbench for RNA-seq data analysis 著者: Sreedharan, Vipin T, Schultheiss, Sebastian J, Jean, Géraldine, Kahles, André, Bohnert, Regina, Drewe, Philipp, Mudrakarta, Pramod, Görnitz, Nico, Zeller, Georg, Rätsch, Gunnar

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Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data 著者: Schultheiss, Sebastian J, Jean, Géraldine, Behr, Jonas, Bohnert, Regina, Drewe, Philipp, Görnitz, Nico, Kahles, André, Mudrakarta, Pramod, Sreedharan, Vipin T, Zeller, Georg, Rätsch, Gunnar

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Systematic evaluation of spliced alignment programs for RNA-seq data 著者: Engström, Pär G, Steijger, Tamara, Sipos, Botond, Grant, Gregory R, Kahles, André, Rätsch, Gunnar, Goldman, Nick, Hubbard, Tim J, Harrow, Jennifer, Guigó, Roderic, Bertone, Paul

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Alternative Splicing Substantially Diversifies the Transcriptome during Early Photomorphogenesis and Correlates with the Energy Availability in Arabidopsis 著者: Hartmann, Lisa, Drewe-Boß, Philipp, Wießner, Theresa, Wagner, Gabriele, Geue, Sascha, Lee, Hsin-Chieh, Obermüller, Dominik M., Kahles, André, Behr, Jonas, Sinz, Fabian H., Rätsch, Gunnar, Wachter, Andreas

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DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation 著者: Dubin, Manu J, Zhang, Pei, Meng, Dazhe, Remigereau, Marie-Stanislas, Osborne, Edward J, Paolo Casale, Francesco, Drewe, Philipp, Kahles, André, Jean, Geraldine, Vilhjálmsson, Bjarni, Jagoda, Joanna, Irez, Selen, Voronin, Viktor, Song, Qiang, Long, Quan, Rätsch, Gunnar, Stegle, Oliver, Clark, Richard M, Nordborg, Magnus

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Genomic Rearrangements in Arabidopsis Considered as Quantitative Traits 著者: Imprialou, Martha, Kahles, André, Steffen, Joshua G., Osborne, Edward J., Gan, Xiangchao, Lempe, Janne, Bhomra, Amarjit, Belfield, Eric, Visscher, Anne, Greenhalgh, Robert, Harberd, Nicholas P, Goram, Richard, Hein, Jotun, Robert-Seilaniantz, Alexandre, Jones, Jonathan, Stegle, Oliver, Kover, Paula, Tsiantis, Miltos, Nordborg, Magnus, Rätsch, Gunnar, Clark, Richard M., Mott, Richard

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NGS-Based S. aureus Typing and Outbreak Analysis in Clinical Microbiology Laboratories: Lessons Learned From a Swiss-Wide Proficiency Test 著者: Dylus, David, Pillonel, Trestan, Opota, Onya, Wüthrich, Daniel, Seth-Smith, Helena M. B., Egli, Adrian, Leo, Stefano, Lazarevic, Vladimir, Schrenzel, Jacques, Laurent, Sacha, Bertelli, Claire, Blanc, Dominique S., Neuenschwander, Stefan, Ramette, Alban, Falquet, Laurent, Imkamp, Frank, Keller, Peter M., Kahles, Andre, Oberhaensli, Simone, Barbié, Valérie, Dessimoz, Christophe, Greub, Gilbert, Lebrand, Aitana

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Multiple reference genomes and transcriptomes for Arabidopsis thaliana 著者: Gan, Xiangchao, Stegle, Oliver, Behr, Jonas, Steffen, Joshua G., Drewe, Philipp, Hildebrand, Katie L., Lyngsoe, Rune, Schultheiss, Sebastian J., Osborne, Edward J., Sreedharan, Vipin T., Kahles, André, Bohnert, Regina, Jean, Géraldine, Derwent, Paul, Kersey, Paul, Belfield, Eric J., Harberd, Nicholas P., Kemen, Eric, Toomajian, Christopher, Kover, Paula X., Clark, Richard M., Rátsch, Gunnar, Mott, Richard

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