Resultats de la cerca - Ka Ming Nip

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  1. 1
    RNA-Bloom enables reference-free and reference-guided sequence assembly for single-cell transcriptomes

    RNA-Bloom enables reference-free and reference-guided sequence assembly for single-cell transcriptomes per Ka Ming Nip, Readman Chiu, Chen Yang, Justin Chu, Hamid Mohamadi, René L. Warren, İnanç Birol

    Publicat 2020
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  2. 2
    Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2

    Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2 per Ka Ming Nip, Saber Hafezqorani, Kristina Gagalova, Readman Chiu, Chen Yang, René L. Warren, İnanç Birol

    Publicat 2023
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  3. 3
    Linear time complexity de novo long read genome assembly with GoldRush

    Linear time complexity de novo long read genome assembly with GoldRush per Johnathan Wong, Lauren Coombe, Vladimir Nikolić, Emily Zhang, Ka Ming Nip, Puneet Sidhu, René L. Warren, İnanç Birol

    Publicat 2023
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  4. 4
    BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters

    BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters per Justin Chu, Sara Sadeghi, Anthony Raymond, Shaun D. Jackman, Ka Ming Nip, Richard Mar, Hamid Mohamadi, Yaron S.N. Butterfield, A. Gordon Robertson, İnanç Birol

    Publicat 2014
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  5. 5
    A clinical transcriptome approach to patient stratification and therapy selection in acute myeloid leukemia

    A clinical transcriptome approach to patient stratification and therapy selection in acute myeloid leukemia per Roderick Docking, Jeremy Parker, Martin Jädersten, Gerben Duns, Linda Chang, Jihong Jiang, Jessica A. Pilsworth, Lucas Swanson, Simon K. Chan, Readman Chiu, Ka Ming Nip, Suárez Alonso Mar, Angela Mo, Xuan Wang, Sergio Martínez-Høyer, Ryan J. Stubbins, Karen Mungall, Andrew J. Mungall, Richard A. Moore, Steven J.M. Jones, İnanç Birol, Marco A. Marra, Donna E. Hogge, Aly Karsan

    Publicat 2021
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  6. 6
    Reduced adenosine-to-inosine miR-455-5p editing promotes melanoma growth and metastasis

    Reduced adenosine-to-inosine miR-455-5p editing promotes melanoma growth and metastasis per Einav Shoshan, Aaron K. Mobley, Russell R. Braeuer, Takafumi Kamiya, Huang Li, Mayra E. Vasquez, Ahmad Salameh, Ho Jeong Lee, Sun Jin Kim, Cristina Ivan, Guermarie Velázquez-Torres, Ka Ming Nip, Kelsey Zhu, Denise Brooks, Steven J.M. Jones, İnanç Birol, M. Mosqueda, Yu-Ye Wen, Agda Karina Eterovic, Anil K. Sood, Patrick Hwu, Hui Shen, A. Gordon Robertson, George A. Călin, Gal Markel, Isaiah J. Fidler, Menashe Bar‐Eli

    Publicat 2015
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  7. 7
    Spruce giga‐genomes: structurally similar yet distinctive with differentially expanding gene families and rapidly evolving genes

    Spruce giga‐genomes: structurally similar yet distinctive with differentially expanding gene families and rapidly evolving genes per Kristina Gagalova, René L. Warren, Lauren Coombe, Johnathan Wong, Ka Ming Nip, Macaire M. S. Yuen, Justin G. A. Whitehill, José M. Celedón, Carol Ritland, Greg Taylor, Dean Cheng, Patrick Plettner, S. Austin Hammond, Hamid Mohamadi, Yongjun Zhao, Richard A. Moore, Andrew J. Mungall, Brian Boyle, Jérôme Laroche, Joan Cottrell, John Mackay, Manuel Lamothe, Sebastien Gérardi, Nathalie Isabel, Nathalie Pavy, Steven J.M. Jones, Jöerg Bohlmann, Jean Bousquet, İnanç Birol

    Publicat 2022
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  8. 8
    Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

    Systematic assessment of long-read RNA-seq methods for transcript identification and quantification per Francisco J. Pardo-Palacios, Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell Sala, Brian A. Williams, Jane Loveland, Maite De María, Matthew S. Adams, Gabriela Balderrama-Gutierrez, Amit K. Behera, José M. González, Toby Hunt, Julien Lagarde, Cindy Liang, Haoran Li, Marcus J. Meade, David A. Moraga Amador, Andrey D. Prjibelski, İnanç Birol, Hamed Bostan, Ashley Brooks, Muhammed Hasan Çelik, Ying Chen, Mei R. M. Du, Colette Felton, Jonathan Göke, Saber Hafezqorani, Ralf Herwig, Hideya Kawaji, Joseph Lee, Jian‐Liang Li, Matthias Lienhard, Alla Mikheenko, Dennis Mulligan, Ka Ming Nip, Mihaela Pertea, Matthew E. Ritchie, Andre Sim, Alison D. Tang, Yuk Kei Wan, Changqing Wang, Brandon Wong, Chen Yang, If Barnes, Andrew Berry, Salvador Capella-Gutiérrez, Namrita Dhillon, Jose M. Fernandez-Gonzalez, Luis Ferrández-Peral, Natàlia García‐Reyero, Stefan Goetz, Carles Hernández-Ferrer, Liudmyla Kondratova, Tianyuan Liu, Alessandra Martinez-Martin, Carlos Menor, Jorge Mestre-Tomás, Jonathan M. Mudge, Nedka G. Panayotova, Alejandro Paniagua, Dmitry Repchevsky, Eric C. Rouchka, Brandon Saint-John, Enrique Sapena, Leon Sheynkman, Melissa Smith, Marie‐Marthe Suner, Hazuki Takahashi, Ingrid Youngworth, Piero Carninci, Nancy D. Denslow, Roderic Guigó, Margaret E. Hunter, Hagen Tilgner, B Wold, Christopher Vollmers, Adam Frankish, Kin Fai Au, Gloria Sheynkman, A Mortazavi, Ana Conesa, Angela N. Brooks

    Publicat 2023
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  9. 9
    Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

    Systematic assessment of long-read RNA-seq methods for transcript identification and quantification per Francisco J. Pardo-Palacios, Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell Sala, Brian A. Williams, Jane Loveland, Maite De María, Matthew S. Adams, Gabriela Balderrama-Gutierrez, Amit K. Behera, José M. González, Toby Hunt, Julien Lagarde, Cindy Liang, Haoran Li, Marcus J. Meade, David A. Moraga Amador, Andrey D. Prjibelski, İnanç Birol, Hamed Bostan, Ashley M. Brooks, Muhammed Hasan Çelik, Ying Chen, Mei R. M. Du, Colette Felton, Jonathan Göke, Saber Hafezqorani, Ralf Herwig, Hideya Kawaji, Joseph Lee, Jian‐Liang Li, Matthias Lienhard, Alla Mikheenko, Dennis Mulligan, Ka Ming Nip, Mihaela Pertea, Matthew E. Ritchie, Andre Sim, Alison D. Tang, Yuk Kei Wan, Changqing Wang, Brandon Wong, Chen Yang, If Barnes, Andrew Berry, Salvador Capella-Gutiérrez, Alyssa Cousineau, Namrita Dhillon, José M. Fernández, Luis Ferrández-Peral, Natàlia Garcia-Reyero, Stefan Götz, Carles Hernández-Ferrer, Liudmyla Kondratova, Tianyuan Liu, Alessandra Martinez-Martin, Carlos Menor, Jorge Mestre-Tomás, Jonathan M. Mudge, Nedka G. Panayotova, Alejandro Paniagua, Dmitry Repchevsky, Xingjie Ren, Eric C. Rouchka, Brandon Saint-John, Enrique Sapena, Leon Sheynkman, Melissa Smith, Marie‐Marthe Suner, Hazuki Takahashi, Ingrid Youngworth, Piero Carninci, Nancy D. Denslow, Roderic Guigó, Margaret E. Hunter, René Maehr, Yin Shen, Hagen Tilgner, B Wold, Christopher Vollmers, Adam Frankish, Kin Fai Au, Gloria Sheynkman, A Mortazavi, Ana Conesa, Angela N. Brooks

    Publicat 2024
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  10. 10
    Comprehensive molecular characterization of gastric adenocarcinoma

    Comprehensive molecular characterization of gastric adenocarcinoma per Adam J. Bass, Vésteinn Thórsson, Ilya Shmulevich, Sheila M. Reynolds, Michael Miller, Brady Bernard, Toshinori Hinoue, Peter W. Laird, Christina Curtis, Hui Shen, Daniel J. Weisenberger, Nikolaus Schultz, Ronglai Shen, Nils Weinhold, David P. Kelsen, Reanne Bowlby, Andy Chu, L. Sylvia, Andrew J. Mungall, A. Gordon Robertson, Payal Sipahimalani, Andrew D. Cherniack, Gad Getz, Yingchun Liu, Michael S. Noble, Chandra Sekhar Pedamallu, Carrie Sougnez, Amaro Taylor‐Weiner, Rehan Akbani, Ju–Seog Lee, Wenbin Liu, Gordon B. Mills, Da Yang, Wei Zhang, Angeliki Pantazi, Michael Parfenov, Margaret L. Gulley, M. Blanca Piazuelo, Barbara Schneider, Jihun Kim, Alex Boussioutas, Margi Sheth, John A. Demchok, Charles S. Rabkin, Joseph Willis, Sam Ng, Katherine S. Garman, David G. Beer, Arjun Pennathur, Benjamin J. Raphael, Hsin-Ta Wu, Robert D. Odze, Hark K. Kim, Jay Bowen, Kristen Leraas, Tara M. Lichtenberg, Stephanie Weaver, Michael D. McLellan, Maciej Wiznerowicz, Ryo Sakai, Michael S. Lawrence, Kristian Cibulskis, Lee Lichtenstein, Sheila Fisher, Stacey Gabriel, Eric S. Lander, Li Ding, Beifang Niu, Adrian Ally, Miruna Balasundaram, İnanç Birol, Denise Brooks, Yaron S.N. Butterfield, Rebecca Carlsen, Justin Chu, Eric Chuah, Hye-Jung Chun, Amanda Clarke, Noreen Dhalla, Ranabir Guin, Robert A. Holt, Steven J.M. Jones, Darlene Lee, Haiyan A. Li, Emilia L. Lim, Yussanne Ma, Marco A. Marra, Michael Mayo, Richard A. Moore, Karen Mungall, Ka Ming Nip, Jacqueline E. Schein, Angela Tam, Nina Thiessen, Rameen Beroukhim, Scott L. Carter, Andrew D. Cherniack, Juok Cho, Daniel DiCara, Scott Frazer

    Publicat 2014
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  11. 11
    Subgroup-specific structural variation across 1,000 medulloblastoma genomes

    Subgroup-specific structural variation across 1,000 medulloblastoma genomes per Paul A. Northcott, David Shih, John Peacock, Livia Garzia, A. Sorana Morrissy, Thomas Zichner, Adrian M. Stütz, Andrey Korshunov, Jüri Reimand, Steven E. Schumacher, Rameen Beroukhim, David W. Ellison, Christian R. Marshall, Anath C. Lionel, Stephen C. Mack, Adrian M. Dubuc, Yuan Yao, Vijay Ramaswamy, Betty Luu, Adi Rolider, Florence M.G. Cavalli, Xin Wang, Marc Remke, Xiaochong Wu, Readman Chiu, Andy Chu, Eric Chuah, Richard Corbett, Gemma R Hoad, Shaun D. Jackman, Yisu Li, Allan Lo, Karen Mungall, Ka Ming Nip, Jenny Q. Qian, Anthony Raymond, Nina Thiessen, Richard Varhol, İnanç Birol, Richard A. Moore, Andrew J. Mungall, Robert A. Holt, Daisuke Kawauchi, Martine F. Roussel, Marcel Kool, David Jones, Hendrick Witt, Africa Fernández-L, Anna Marie Kenney, Robert J. Wechsler‐Reya, Peter B. Dirks, Tzvi Aviv, Wiesława Grajkowska, Marta Perek‐Polnik, Christine Haberler, Olivier Delattre, Stéphanie Reynaud, François Doz, Sarah S. Pernet-Fattet, Byung-Kyu Cho, Seung-Ki Kim, Kyu‐Chang Wang, Wolfram Scheurlen, Charles G. Eberhart, Michelle Fèvre‐Montange, Anne Jouvet, Ian F. Pollack, Xing Fan, Karin M. Muraszko, G. Yancey Gillespie, Concezio Di Rocco, Luca Massimi, Erna Michiels, Nanne K. Kloosterhof, Pim J. French, Johan M. Kros, James M. Olson, Richard G. Ellenbogen, Karel Zitterbart, Leoš Křen, Reid C. Thompson, Michael K. Cooper, Bolesław Lach, Roger E. McLendon, Darell D. Bigner, Adam M. Fontebasso, Steffen Albrecht, Nada Jabado, Janet C. Lindsey, Simon Bailey, Nalin Gupta, William A. Weiss, László Bognár, Álmos Klekner, Timothy Van Meter, Toshihiro Kumabe, Teiji Tominaga, Samer K. Elbabaa, Jeffrey R. Leonard, Joshua B. Rubin

    Publicat 2012
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