Resultats de la cerca - Joshua Quick

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  1. 1
    A complete bacterial genome assembled de novo using only nanopore sequencing data

    A complete bacterial genome assembled de novo using only nanopore sequencing data per Nicholas J. Loman, Joshua Quick, Jared T. Simpson

    Publicat 2015
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  2. 2
    Ultra-deep, long-read nanopore sequencing of mock microbial community standards

    Ultra-deep, long-read nanopore sequencing of mock microbial community standards per Samuel M. Nicholls, Joshua Quick, Shuiquan Tang, Nicholas J. Loman

    Publicat 2019
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  3. 3
    <i>De novo</i>Identification of DNA Modifications Enabled by Genome-Guided Nanopore Signal Processing

    <i>De novo</i>Identification of DNA Modifications Enabled by Genome-Guided Nanopore Signal Processing per Marcus H. Stoiber, Joshua Quick, Rob Egan, Ji Eun Lee, S Celniker, Robert K. Neely, Nicholas J. Loman, L Pennacchio, James B. Brown

    Publicat 2016
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  4. 4
    CONCOCT: Clustering cONtigs on COverage and ComposiTion

    CONCOCT: Clustering cONtigs on COverage and ComposiTion per Johannes Alneberg, Brynjar Smári Bjarnason, Ino de Bruijn, Melanie Schirmer, Joshua Quick, Umer Zeeshan Ijaz, Nicholas J. Loman, Anders F. Andersson, Christopher Quince

    Publicat 2013
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  5. 5
    Seeking the source of<i>Pseudomonas aeruginosa</i>infections in a recently opened hospital: an observational study using whole-genome sequencing

    Seeking the source of<i>Pseudomonas aeruginosa</i>infections in a recently opened hospital: an observational study using whole-genome sequencing per Joshua Quick, Nicola Cumley, Christopher M. Wearn, Marc Niebel, Chrystala Constantinidou, Chris M. Thomas, Mark J. Pallen, Naiem Moiemen, Amy Bamford, Beryl Oppenheim, Nicholas J. Loman

    Publicat 2014
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  6. 6
    Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe

    Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe per Gemma L. Kay, Martin J. Sergeant, Zhemin Zhou, Jacqueline Chan, Andrew Millard, Joshua Quick, Ildikó Szikossy, Ildikó Pap, Mark Spigelman, Nicholas J. Loman, Mark Achtman, Helen D. Donoghue, Mark J. Pallen

    Publicat 2015
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  7. 7
    Tracking arboviruses, their transmission vectors and potential hosts by nanopore sequencing of mosquitoes

    Tracking arboviruses, their transmission vectors and potential hosts by nanopore sequencing of mosquitoes per Jeremy Mirza, Lilian de Oliveira Guimarães, Samuel Wilkinson, E Rocha, Mayara Bertanhe, Vanessa Christe Helfstein, Juliana Telles de Deus, Ingra Morales Claro, Nicola Cumley, Joshua Quick, Nuno R. Faria, Éster Cerdeira Sabino, Karin Kirchgatter, Nicholas J. Loman

    Publicat 2024
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  8. 8
    Complete Closed Genome Sequence of Nontoxigenic Invasive <i>Corynebacterium diphtheriae</i> bv. mitis Strain ISS 3319

    Complete Closed Genome Sequence of Nontoxigenic Invasive <i>Corynebacterium diphtheriae</i> bv. mitis Strain ISS 3319 per Camila Azevedo Antunes, Emily J. Richardson, Joshua Quick, Pablo Fuentes‐Utrilla, Georgia L. Isom, Emily C. A. Goodall, Jens Möller, Paul A. Hoskisson, Ana Luíza Mattos‐Guaraldi, Adam F. Cunningham, Nicholas J. Loman, Vartul Sangal, Andreas Burkovski, Ian R. Henderson

    Publicat 2018
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  9. 9
    Extensive Modulation of the Fecal Metagenome in Children With Crohn’s Disease During Exclusive Enteral Nutrition

    Extensive Modulation of the Fecal Metagenome in Children With Crohn’s Disease During Exclusive Enteral Nutrition per Christopher Quince, Umer Zeeshan Ijaz, Nicholas J. Loman, A. Murat Eren, Delphine Saulnier, Julie A. Russell, Sarah–Jane Haig, Szymon Calus, Joshua Quick, Andrew R. Barclay, Martin Bertz, Michaël Blaut, Richard Hansen, Paraic McGrogan, Richard K. Russell, Christine A. Edwards, Konstantinos Gerasimidis

    Publicat 2015
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  10. 10
    A32 Genomic surveillance of Zika virus transmission in the Amazonas State, Brazil

    A32 Genomic surveillance of Zika virus transmission in the Amazonas State, Brazil per Marta Giovanetti, Jaqueline Góes de Jesus, Joshua Quick, Ingra Morales Claro, Joilson Xavier, Sarah C. Hill, Souza Renato, Paola Paz, José Lourenço, Simon Dellicour, Esther Cerdeira Sabino, Nicholas J. Loman, Felipe Gomes Naveca, Oliver G. Pybus, Nuno R. Faria, Luíz Carlos Júnior Alcântara

    Publicat 2019
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  11. 11
    Detection of human adenovirus F41 in wastewater and its relationship to clinical cases of acute hepatitis of unknown aetiology

    Detection of human adenovirus F41 in wastewater and its relationship to clinical cases of acute hepatitis of unknown aetiology per Marina Reyne, Danielle M. Allen, Ashley Levickas, Pearce Allingham, Jonathan Lock, Arthur Fitzgerald, Cormac McSparron, Behnam Firoozi Nejad, Jennifer McKinley, Andrew Lee, Stephen H. Bell, Joshua Quick, Charlotte J. Houldcroft, Connor G. G. Bamford, D.F. Gilpin, John W. McGrath

    Publicat 2022
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  12. 12
    A32 Genomic surveillance of Zika virus transmission in the Amazonas State, Brazil

    A32 Genomic surveillance of Zika virus transmission in the Amazonas State, Brazil per Giovanetti, Marta, de Jesus, Jaqueline Goes, Joshua, Quick, Claro, Ingra Morales, Junior, Joilson Xavier, Hill, Sarah C, Renato, Souza, Paz, Paola, Lourenco, Jose, Dellicour, Simon, Sabino, Esther, Loman, Nicholas J, Naveca, Felipe, Pybus, Oliver G, Faria, Nuno Rodrigues, Carlos Junior Alcantara, Luiz

    Publicat 2019
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  13. 13
    An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar

    An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar per Nathan D. Grubaugh, Karthik Gangavarapu, Joshua Quick, Nathaniel L. Matteson, Jaqueline Góes de Jesus, Bradley J. Main, Amanda L. Tan, Lauren M. Paul, Doug E. Brackney, Saran Grewal, Nikos Gurfield, Koen K. A. Van Rompay, Sharon Isern, Scott F. Michael, Lark L. Coffey, Nicholas J. Loman, Kristian G. Andersen

    Publicat 2018
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  14. 14
    An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar

    An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar per Nathan D. Grubaugh, Karthik Gangavarapu, Joshua Quick, Nathaniel L. Matteson, Jaqueline Góes de Jesus, Bradley J. Main, Amanda L. Tan, Lauren M. Paul, Doug E. Brackney, Saran Grewal, Nikos Gurfield, Koen K. A. Van Rompay, Sharon Isern, Scott F. Michael, Lark L. Coffey, Nicholas J. Loman, Kristian G. Andersen

    Publicat 2019
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  15. 15
    Nanopore native RNA sequencing of a human poly(A) transcriptome

    Nanopore native RNA sequencing of a human poly(A) transcriptome per Rachael E. Workman, Alison D. Tang, Paul S. Tang, Miten Jain, John R. Tyson, Philip C. Zuzarte, Timothy Gilpatrick, Roham Razaghi, Joshua Quick, Norah Sadowski, Nadine Holmes, Jaqueline Góes de Jesus, Karen L. Jones, Terrance P. Snutch, Nicholas J. Loman, Benedict Paten, Matthew Loose, Jared T. Simpson, Hugh E. Olsen, Angela N. Brooks, Mark Akeson, Winston Timp

    Publicat 2018
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  16. 16
    Nanopore native RNA sequencing of a human poly(A) transcriptome

    Nanopore native RNA sequencing of a human poly(A) transcriptome per Rachael E. Workman, Alison D. Tang, Paul S. Tang, Miten Jain, John R. Tyson, Roham Razaghi, Philip C. Zuzarte, Timothy Gilpatrick, Alexander Payne, Joshua Quick, Norah Sadowski, Nadine Holmes, Jaqueline Góes de Jesus, Karen L. Jones, Cameron M. Soulette, Terrance P. Snutch, Nicholas J. Loman, Benedict Paten, Matthew Loose, Jared T. Simpson, Hugh E. Olsen, Angela N. Brooks, Mark Akeson, Winston Timp

    Publicat 2019
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  17. 17
    Whole genome sequencing of hepatitis B virus using tiled amplicon (HEPTILE) and probe based enrichment on Illumina and Nanopore platforms

    Whole genome sequencing of hepatitis B virus using tiled amplicon (HEPTILE) and probe based enrichment on Illumina and Nanopore platforms per Sheila Lumley, Chris Kent, Daisy Jennings, Haiting Chai, George Airey, Elizabeth Waddilove, Marion Delphin, Amy Trebes, Anna McNaughton, Khadija Said Mohammed, Samuel Wilkinson, Yanxia Wu, George MacIntyre-Cockett, Beatrice Kimono, Kwizera Moses Mbonye, Kevin Ojambo, Tongai Maponga, Cedric C.S. Tan, Catherine de Lara, Jacqueline Martin, James Campbell, Marije Van Schalkwyk, Dominique Goedhals, Robert Newton, Eleanor Barnes, Nicholas J. Loman, Paolo Piazza, Joshua Quick, M. Azim Ansari, Philippa C. Matthews

    Publicat 2025
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  18. 18
    Rapid viral metagenomics using SMART-9N amplification and nanopore sequencing

    Rapid viral metagenomics using SMART-9N amplification and nanopore sequencing per Ingra Morales Claro, Mariana Severo Ramundo, Thaís de Moura Coletti, Camila Alves Maia da Silva, Ian Nunes Valença, Darlan S. Candido, Flavia Cristina da Silva Sales, Erika R. Manuli, Jaqueline Góes de Jesus, Anderson Vicente de Paula, Alvina Clara Félix, Pâmela dos Santos Andrade, Mariana C. Pinho, William Marciel de Souza, Mariene R. Amorim, José Luiz Proença‐Módena, Esper G. Kallás, José Eduardo Levi, Nuno R. Faria, Éster Cerdeira Sabino, Nicholas J. Loman, Joshua Quick

    Publicat 2021
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  19. 19
    Rapid viral metagenomics using SMART-9N amplification and nanopore sequencing

    Rapid viral metagenomics using SMART-9N amplification and nanopore sequencing per Ingra Morales Claro, Mariana Severo Ramundo, Thaís de Moura Coletti, Camila Alves Maia da Silva, Ian Nunes Valença, Darlan S. Candido, Flavia Cristina da Silva Sales, Erika R. Manuli, Jaqueline Góes de Jesus, Anderson de Paula, Alvina Clara Félix, Pâmela dos Santos Andrade, Mariana C. Pinho, William Marciel de Souza, Mariene R. Amorim, José Luiz Proença‐Módena, Esper G. Kallás, José Eduardo Levi, Nuno R. Faria, Éster Cerdeira Sabino, Nicholas J. Loman, Joshua Quick

    Publicat 2023
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  20. 20
    Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

    Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples per Joshua Quick, Nathan D. Grubaugh, Steven T. Pullan, Ingra Morales Claro, Andrew D. Smith, Karthik Gangavarapu, Glenn Oliveira, Refugio Robles‐Sikisaka, Thomas F. Rogers, Nathan Beutler, Dennis R. Burton, Lia Laura Lewis‐Ximenez, Jaqueline Góes de Jesus, Marta Giovanetti, Sarah C. Hill, Allison Black, Trevor Bedford, Miles W. Carroll, Márcio Roberto Teixeira Nunes, Luíz Carlos Júnior Alcântara, Éster Cerdeira Sabino, Sally A. Baylis, Nuno R. Faria, Matthew Loose, Jared T. Simpson, Oliver G. Pybus, Kristian G. Andersen, Nicholas J. Loman

    Publicat 2017
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