Resultats de la cerca - Joshua D. Welch

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  1. 1
    UINMF performs mosaic integration of single-cell multi-omic datasets using nonnegative matrix factorization

    UINMF performs mosaic integration of single-cell multi-omic datasets using nonnegative matrix factorization per April R. Kriebel, Joshua D. Welch

    Publicat 2022
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  2. 2
    Bayesian Inference of RNA Velocity from Multi-Lineage Single-Cell Data

    Bayesian Inference of RNA Velocity from Multi-Lineage Single-Cell Data per Yichen Gu, David Blaauw, Joshua D. Welch

    Publicat 2022
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  3. 3
    Robust detection of alternative splicing in a population of single cells

    Robust detection of alternative splicing in a population of single cells per Joshua D. Welch, Yin Hu, Jan F. Prins

    Publicat 2016
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  4. 4
    SLICER: inferring branched, nonlinear cellular trajectories from single cell RNA-seq data

    SLICER: inferring branched, nonlinear cellular trajectories from single cell RNA-seq data per Joshua D. Welch, Alexander J. Hartemink, Jan F. Prins

    Publicat 2016
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  5. 5
    TUT7 catalyzes the uridylation of the 3′ end for rapid degradation of histone mRNA

    TUT7 catalyzes the uridylation of the 3′ end for rapid degradation of histone mRNA per Patrick E. Lackey, Joshua D. Welch, William F. Marzluff

    Publicat 2016
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  6. 6
    MATCHER: manifold alignment reveals correspondence between single cell transcriptome and epigenome dynamics

    MATCHER: manifold alignment reveals correspondence between single cell transcriptome and epigenome dynamics per Joshua D. Welch, Alexander J. Hartemink, Jan F. Prins

    Publicat 2017
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  7. 7
    PerturbNet predicts single-cell responses to unseen chemical and genetic perturbations

    PerturbNet predicts single-cell responses to unseen chemical and genetic perturbations per Hengshi Yu, Weizhou Qian, Yuxuan Song, Joshua D. Welch

    Publicat 2025
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  8. 8
    Multi-omic single-cell velocity models epigenome–transcriptome interactions and improves cell fate prediction

    Multi-omic single-cell velocity models epigenome–transcriptome interactions and improves cell fate prediction per Chen Li, Maria Virgilio, Kathleen L. Collins, Joshua D. Welch

    Publicat 2022
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  9. 9
    Jointly defining cell types from multiple single-cell datasets using LIGER

    Jointly defining cell types from multiple single-cell datasets using LIGER per Jialin Liu, Chao Gao, Joshua Sodicoff, Velina Kozareva, Evan Z. Macosko, Joshua D. Welch

    Publicat 2020
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  10. 10
    Integrative inference of brain cell similarities and differences from single-cell genomics

    Integrative inference of brain cell similarities and differences from single-cell genomics per Joshua D. Welch, Velina Kozareva, Ashley N. Ferreira, Charles Vanderburg, Caroline Martin, Evan Z. Macosko

    Publicat 2018
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  11. 11
    Single-Cell Multi-omic Integration Compares and Contrasts Features of Brain Cell Identity

    Single-Cell Multi-omic Integration Compares and Contrasts Features of Brain Cell Identity per Joshua D. Welch, Velina Kozareva, Ashley N. Ferreira, Charles Vanderburg, Caroline Martin, Evan Z. Macosko

    Publicat 2019
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  12. 12
    A subset of replication-dependent histone mRNAs are expressed as polyadenylated RNAs in terminally differentiated tissues

    A subset of replication-dependent histone mRNAs are expressed as polyadenylated RNAs in terminally differentiated tissues per Shawn M. Lyons, Clark H. Cunningham, Joshua D. Welch, Beezly S. Groh, Andrew Guo, Bruce Wei, Michael L. Whitfield, Yue Xiong, William F. Marzluff

    Publicat 2016
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  13. 13
    The fate of early perichondrial cells in developing bones

    The fate of early perichondrial cells in developing bones per Yuki Matsushita, Angel Ka Yan Chu, Chiaki Tsutsumi‐Arai, Shion Orikasa, Mizuki Nagata, Sunny Y. Wong, Joshua D. Welch, Wanida Ono, Noriaki Ono

    Publicat 2022
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  14. 14
    Slide-seq: A scalable technology for measuring genome-wide expression at high spatial resolution

    Slide-seq: A scalable technology for measuring genome-wide expression at high spatial resolution per Samuel G. Rodriques, Robert R. Stickels, Aleksandrina Goeva, Caroline Martin, Evan Murray, Charles Vanderburg, Joshua D. Welch, Linlin M. Chen, Fei Chen, Evan Z. Macosko

    Publicat 2019
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  15. 15
    A Wnt-mediated transformation of the bone marrow stromal cell identity orchestrates skeletal regeneration

    A Wnt-mediated transformation of the bone marrow stromal cell identity orchestrates skeletal regeneration per Yuki Matsushita, Mizuki Nagata, Kenneth M. Kozloff, Joshua D. Welch, Koji Mizuhashi, Nicha Tokavanich, Shawn A. Hallett, Daniel C. Link, Takashi Nagasawa, Wanida Ono, Noriaki Ono

    Publicat 2020
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  16. 16
    Deep Sequencing Shows Multiple Oligouridylations Are Required for 3′ to 5′ Degradation of Histone mRNAs on Polyribosomes

    Deep Sequencing Shows Multiple Oligouridylations Are Required for 3′ to 5′ Degradation of Histone mRNAs on Polyribosomes per Michael K. Slevin, Stacie Meaux, Joshua D. Welch, Rebecca L. Bigler, Paula L. Miliani de Marval, Wei Su, Robert E. Rhoads, Jan F. Prins, William F. Marzluff

    Publicat 2014
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  17. 17
    Single-Cell Transcriptomic Analyses of Cell Fate Transitions during Human Cardiac Reprogramming

    Single-Cell Transcriptomic Analyses of Cell Fate Transitions during Human Cardiac Reprogramming per Yang Zhou, Ziqing Liu, Joshua D. Welch, Xu Gao, Li Wang, Tiffany A. Garbutt, Benjamin Keepers, Hong Ma, Jan F. Prins, Weining Shen, Jiandong Liu, Qian Li

    Publicat 2019
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  18. 18
    Bone marrow endosteal stem cells dictate active osteogenesis and aggressive tumorigenesis

    Bone marrow endosteal stem cells dictate active osteogenesis and aggressive tumorigenesis per Yuki Matsushita, Jialin Liu, Angel Ka Yan Chu, Chiaki Tsutsumi‐Arai, Mizuki Nagata, Yuki Arai, Wanida Ono, Kouhei Yamamoto, Thomas L. Saunders, Joshua D. Welch, Noriaki Ono

    Publicat 2023
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  19. 19
    SquiggleNet: real-time, direct classification of nanopore signals

    SquiggleNet: real-time, direct classification of nanopore signals per Yuwei Bao, Jack Wadden, John R. Erb‐Downward, Piyush Ranjan, Weichen Zhou, T. L. McDonald, Ryan E. Mills, Alan P. Boyle, Robert P. Dickson, David Blaauw, Joshua D. Welch

    Publicat 2021
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  20. 20
    Iterative single-cell multi-omic integration using online learning

    Iterative single-cell multi-omic integration using online learning per Chao Gao, Jialin Liu, April R. Kriebel, Sebastian Preißl, Chongyuan Luo, Rosa Castanon, Justin P. Sandoval, Angeline Rivkin, Joseph R. Nery, M. Margarita Behrens, Joseph R. Ecker, Bing Ren, Joshua D. Welch

    Publicat 2021
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