Search Results - Joshua D. Campbell

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  1. 1
    Genomic approaches to accelerate cancer interception

    Genomic approaches to accelerate cancer interception by Jennifer Beane, Joshua D. Campbell, Julian Lel, Jessica Vick, Avrum Spira

    Published 2017
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  2. 2
    A single-cell lung atlas of complement genes identifies the mesothelium and epithelium as prominent sources of extrahepatic complement proteins

    A single-cell lung atlas of complement genes identifies the mesothelium and epithelium as prominent sources of extrahepatic complement proteins by Neha Chaudhary, Archana Jayaraman, Christoph Reinhardt, Joshua D. Campbell, Markus Bosmann

    Published 2022
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  3. 3
    A single-sample microarray normalization method to facilitate personalized-medicine workflows

    A single-sample microarray normalization method to facilitate personalized-medicine workflows by Stephen Piccolo, Ying Sun, Joshua D. Campbell, Marc E. Lenburg, Andrea H. Bild, W. Evan Johnson

    Published 2012
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  4. 4
    Decontamination of ambient RNA in single-cell RNA-seq with DecontX

    Decontamination of ambient RNA in single-cell RNA-seq with DecontX by Shiyi Yang, Sean Corbett, Yusuke Koga, Zhe Wang, W. Evan Johnson, Masanao Yajima, Joshua D. Campbell

    Published 2020
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  5. 5
    The Case for a Pre-Cancer Genome Atlas (PCGA)

    The Case for a Pre-Cancer Genome Atlas (PCGA) by Joshua D. Campbell, Sarah A. Mazzilli, Mary E. Reid, Samjot S. Dhillon, Suso Platero, Jennifer Beane, Avrum Spira

    Published 2016
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  6. 6
    Celda: a Bayesian model to perform co-clustering of genes into modules and cells into subpopulations using single-cell RNA-seq data

    Celda: a Bayesian model to perform co-clustering of genes into modules and cells into subpopulations using single-cell RNA-seq data by Zhe Wang, Shiyi Yang, Yusuke Koga, Sean Corbett, Conor Shea, W. Evan Johnson, Masanao Yajima, Joshua D. Campbell

    Published 2022
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  7. 7
    Alterations in Bronchial Airway miRNA Expression for Lung Cancer Detection

    Alterations in Bronchial Airway miRNA Expression for Lung Cancer Detection by Ana B. Pavel, Joshua D. Campbell, Gang Liu, David Elashoff, Steven M. Dubinett, Kate Smith, Duncan Whitney, Marc E. Lenburg, Avrum Spira

    Published 2017
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  8. 8
    Osteocytes, not Osteoblasts or Lining Cells, are the Main Source of the RANKL Required for Osteoclast Formation in Remodeling Bone

    Osteocytes, not Osteoblasts or Lining Cells, are the Main Source of the RANKL Required for Osteoclast Formation in Remodeling Bone by Jinhu Xiong, M. Piemontese, Melda Onal, Joshua D. Campbell, Joseph J. Goellner, Vladimir Dusevich, Lynda F. Bonewald, Stavros C. Manolagas, Charles A. O’Brien

    Published 2015
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  9. 9
    miR-638 regulates gene expression networks associated with emphysematous lung destruction

    miR-638 regulates gene expression networks associated with emphysematous lung destruction by Stephanie A. Christenson, Corry‐Anke Brandsma, Joshua D. Campbell, Darryl A. Knight, Dmitri V. Pechkovsky, James C. Hogg, Wim Timens, Dirkje S. Postma, Marc E. Lenburg, Avrum Spira

    Published 2013
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  10. 10
    Integrative Analysis of DNA Methylation and Gene Expression Data Identifies EPAS1 as a Key Regulator of COPD

    Integrative Analysis of DNA Methylation and Gene Expression Data Identifies EPAS1 as a Key Regulator of COPD by Seungyeul Yoo, Sachiko Takikawa, Patrick Geraghty, Carmen Argmann, Joshua D. Campbell, Luan Lin, Tao Huang, Zhidong Tu, Robert Feronjy, Avrum Spira, Eric E. Schadt, Charles A. Powell, Jun Zhu

    Published 2015
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  11. 11
    The cellular and molecular determinants of emphysematous destruction in COPD

    The cellular and molecular determinants of emphysematous destruction in COPD by Masaru Suzuki, Marc A. Sze, Joshua D. Campbell, John F. Brothers, Marc E. Lenburg, John E. McDonough, W. Mark Elliott, Joel D. Cooper, Avrum Spira, James C. Hogg

    Published 2017
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  12. 12
    Comprehensive generation, visualization, and reporting of quality control metrics for single-cell RNA sequencing data

    Comprehensive generation, visualization, and reporting of quality control metrics for single-cell RNA sequencing data by Rui Hong, Yusuke Koga, Shruthi Bandyadka, Anastasia Leshchyk, Yichen Wang, Vidya Akavoor, Xinyun Cao, Irzam Sarfraz, Zhe Wang, Salam Alabdullatif, Frederick Jansen, Masanao Yajima, W. Evan Johnson, Joshua D. Campbell

    Published 2022
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  13. 13
    Identification of transforming growth factor-beta-regulated microRNAs and the microRNA-targetomes in primary lung fibroblasts

    Identification of transforming growth factor-beta-regulated microRNAs and the microRNA-targetomes in primary lung fibroblasts by Jennie Ong, Wim Timens, Vijay Rajendran, Arjan Algra, Avrum Spira, Marc E. Lenburg, Joshua D. Campbell, Maarten van den Berge, Dirkje S. Postma, Anke van den Berg, Joost Kluiver, Corry‐Anke Brandsma

    Published 2017
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  14. 14
    Genomic Profiling of Prostate Cancers from Men with African and European Ancestry

    Genomic Profiling of Prostate Cancers from Men with African and European Ancestry by Yusuke Koga, Hanbing Song, Zachary R. Chalmers, Justin Y. Newberg, Eejung Kim, Jian Carrot‐Zhang, Daphnee Piou, Paz Polak, Sarki A. Abdulkadir, Elad Ziv, Matthew Meyerson, Garrett M. Frampton, Joshua D. Campbell, Franklin W. Huang

    Published 2020
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  15. 15
    NetSig: network-based discovery from cancer genomes

    NetSig: network-based discovery from cancer genomes by Heiko Horn, Michael S. Lawrence, Candace R. Chouinard, Yashaswi Shrestha, Jessica Xin Hu, Elizabeth Worstell, Emily Shea, Nina Ilić, Eejung Kim, Atanas Kamburov, Alireza Kashani, William C. Hahn, Joshua D. Campbell, Jesse S. Boehm, Gad Getz, Kasper Lage

    Published 2017
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  16. 16
    Characterizing the Impact of Smoking and Lung Cancer on the Airway Transcriptome Using RNA-Seq

    Characterizing the Impact of Smoking and Lung Cancer on the Airway Transcriptome Using RNA-Seq by Jennifer Beane, Jessica Vick, Frank Schembri, Christina Anderlind, Adam C. Gower, Joshua D. Campbell, Lingqi Luo, Xiao Hui Zhang, Xiao‐Jun Ji, Yuriy O. Alekseyev, Shenglong Wang, Shawn Levy, Pierre P. Massion, Marc E. Lenburg, Avrum Spira

    Published 2011
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  17. 17
    Whole-genome doubling confers unique genetic vulnerabilities on tumour cells

    Whole-genome doubling confers unique genetic vulnerabilities on tumour cells by Ryan J. Quinton, Amanda DiDomizio, Marc A. Vittoria, Kristýna Kotýnková, Carlos J. Ticas, Sheena Patel, Yusuke Koga, Jasmine Vakhshoorzadeh, Nicole Hermance, Taruho S. Kuroda, Neha Parulekar, Alison M. Taylor, Amity L. Manning, Joshua D. Campbell, Neil J. Ganem

    Published 2021
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  18. 18
    Comparison of Prevalence and Types of Mutations in Lung Cancers Among Black and White Populations

    Comparison of Prevalence and Types of Mutations in Lung Cancers Among Black and White Populations by Joshua D. Campbell, Christopher S. Lathan, Lynette M. Sholl, Matthew Ducar, Mikenah Vega, Ashwini Sunkavalli, Ling Lin, Megan Hanna, Laura Schubert, Aaron R. Thorner, Nicholas R. Faris, David R. Williams, Raymond U. Osarogiagbon, Paul Van Hummelen, Matthew Meyerson, Laura E. MacConaill

    Published 2017
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  19. 19
    Molecular subtyping reveals immune alterations associated with progression of bronchial premalignant lesions

    Molecular subtyping reveals immune alterations associated with progression of bronchial premalignant lesions by Jennifer Beane, Sarah A. Mazzilli, Joshua D. Campbell, Grant Duclos, Kostyantyn Krysan, Christopher Moy, Catalina Perdomo, Michael Schäffer, Gang Liu, Sherry Zhang, Hanqiao Liu, Jessica Vick, Samjot S. Dhillon, Suso Platero, Steven M. Dubinett, Christopher S. Stevenson, Mary E. Reid, Marc E. Lenburg, Avrum Spira

    Published 2019
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  20. 20
    Genetic Ancestry Contributes to Somatic Mutations in Lung Cancers from Admixed Latin American Populations

    Genetic Ancestry Contributes to Somatic Mutations in Lung Cancers from Admixed Latin American Populations by Jian Carrot‐Zhang, Giovanny Soca‐Chafre, Nick Patterson, Aaron R. Thorner, Anwesha Nag, Jacqueline Watson, Giulio Genovese, July Rodríguez, Maya K. Gelbard, Luis Corrales, Yoichiro Mitsuishi, Gavin Ha, Joshua D. Campbell, Geoffrey R. Oxnard, Óscar Arrieta, Andrés F. Cardona, Alexander Gusev, Matthew Meyerson

    Published 2020
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