نتائج البحث - José Alquicira‐Hernandez

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  1. 1
    <i>Nebulosa</i> recovers single-cell gene expression signals by kernel density estimation

    <i>Nebulosa</i> recovers single-cell gene expression signals by kernel density estimation حسب José Alquicira‐Hernandez, Joseph E. Powell

    منشور في 2021
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    Artigo
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  2. 2
    scPred: accurate supervised method for cell-type classification from single-cell RNA-seq data

    scPred: accurate supervised method for cell-type classification from single-cell RNA-seq data حسب José Alquicira‐Hernandez, Anuja Sathe, Hanlee P. Ji, Quan Nguyen, Joseph E. Powell

    منشور في 2019
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    Artigo
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  3. 3
    Benchmarking of cell type deconvolution pipelines for transcriptomics data

    Benchmarking of cell type deconvolution pipelines for transcriptomics data حسب Francisco Avila Cobos, José Alquicira‐Hernandez, Joseph E. Powell, Pieter Mestdagh, Katleen De Preter

    منشور في 2020
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    Artigo
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  4. 4
    ascend: R package for analysis of single-cell RNA-seq data

    ascend: R package for analysis of single-cell RNA-seq data حسب Anne Senabouth, Samuel W. Lukowski, José Alquicira‐Hernandez, Stacey B. Andersen, Xin Mei, Quan Nguyen, Joseph E. Powell

    منشور في 2019
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    Artigo
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  5. 5
    DevKidCC allows for robust classification and direct comparisons of kidney organoid datasets

    DevKidCC allows for robust classification and direct comparisons of kidney organoid datasets حسب Sean B. Wilson, Sara E. Howden, Jessica M. Vanslambrouck, Aude Dorison, José Alquicira‐Hernandez, Joseph E. Powell, Melissa H. Little

    منشور في 2022
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    Artigo
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  6. 6
    Rail-RNA: scalable analysis of RNA-seq splicing and coverage

    Rail-RNA: scalable analysis of RNA-seq splicing and coverage حسب Abhinav Nellore, Leonardo Collado‐Torres, Andrew E. Jaffe, José Alquicira‐Hernandez, Christopher Wilks, Jacob Pritt, James T. Morton, Jeffrey T. Leek, Ben Langmead

    منشور في 2016
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    Artigo
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  7. 7
    Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive

    Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive حسب Abhinav Nellore, Andrew E. Jaffe, Jean‐Philippe Fortin, José Alquicira‐Hernandez, Leonardo Collado‐Torres, Siruo Wang, Robert A. Phillips, Nishika Karbhari, Kasper D. Hansen, Ben Langmead, Jeffrey T. Leek

    منشور في 2016
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  8. 8
    Tracking the clonal dynamics of SARS-CoV-2-specific T cells in children and adults with mild/asymptomatic COVID-19

    Tracking the clonal dynamics of SARS-CoV-2-specific T cells in children and adults with mild/asymptomatic COVID-19 حسب Weng Hua Khoo, Katherine Jackson, Chansavath Phetsouphanh, John Zaunders, José Alquicira‐Hernandez, Seyhan Yazar, Stephanie Ruiz-Diaz, Mandeep Singh, Rama Dhenni, Wunna Kyaw, Fiona Tea, Vera Merheb, Fiona X. Z. Lee, Rebecca Burrell, Annaleise R. Howard‐Jones, Archana Koirala, Li Zhou, Aysen Yuksel, Daniel Catchpoole, Catherine L. Lai, Tennille L. Vitagliano, Romain Rouet, Daniel Christ, Benjamin Tang, Nicholas P. West, Shane George, John Gerrard, Peter I. Croucher, Anthony D. Kelleher, Christopher G. Goodnow, Jonathan Sprent, Joseph E. Powell, Fabienne Brilot, Ralph Nanan, Peter Hsu, Elissa K. Deenick, Philip N Britton, Tri Giang Phan

    منشور في 2022
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  9. 9
    Large-scale cis- and trans-eQTL analyses identify thousands of genetic loci and polygenic scores that regulate blood gene expression

    Large-scale cis- and trans-eQTL analyses identify thousands of genetic loci and polygenic scores that regulate blood gene expression حسب Urmo Võsa, Annique Claringbould, Harm-Jan Westra, Marc Jan Bonder, Patrick Deelen, Biao Zeng, Holger Kirsten, Ashis Saha, Roman Kreuzhuber, Seyhan Yazar, Harm Brugge, Roy Oelen, Dylan H. de Vries, Monique G.P. van der Wijst, Silva Kasela, Natalia Pervjakova, Isabel Alves, Marie-Julie Favé, Mawussé Agbessi, Mark Christiansen, Rick Jansen, Ilkka Seppälä, Tong Lin, Alexander Teumer, Katharina Schramm, Gibran Hemani, Joost Verlouw, Hanieh Yaghootkar, Reyhan Sönmez Flitman, Andrew Brown, Viktorija Kukushkina, Anette Kalnapenkis, Sina Rüeger, Eleonora Porcu, Jaanika Kronberg, Johannes Kettunen, Bernett Lee, Futao Zhang, Ting Qi, José Alquicira‐Hernandez, Wibowo Arindrarto, Frank Beutner, Peter A.C. ‘t Hoen, Joyce B. J. van Meurs, Jenny van Dongen, Maarten van Iterson, Morris A. Swertz, Marc Jan Bonder, Julia Dmitrieva, Mahmoud Elansary, Benjamin P. Fairfax, Michel Georges, Bastiaan T. Heijmans, Alex W. Hewitt, Mika Kähönen, Yungil Kim, Julian C. Knight, Péter Kovács, Knut Krohn, Shuang� Li, Markus Loeffler, Urko M. Marigorta, Hailang Mei, Yukihide Momozawa, Martina Müller‐Nurasyid, Matthias Nauck, Michel G. Nivard, Brenda W.J.H. Penninx, Jonathan K. Pritchard, Olli T. Raitakari, Olaf Rötzschke, P. Eline Slagboom, Coen D.A. Stehouwer, Michael Stümvoll, Patrick Sullivan, Peter A.C. ‘t Hoen, Joachim Thiery, Anke Tönjes, Jenny van Dongen, Maarten van Iterson, Jan H. Veldink, Uwe Völker, Robert Warmerdam, Cisca Wijmenga, Morris A. Swertz, Anand Kumar Andiappan, Grant W. Montgomery, Samuli Ripatti, Markus Perola, Zoltán Kutalik, Emmanouil T. Dermitzakis, Sven Bergmann, Timothy M. Frayling, Joyce B. J. van Meurs, Holger Prokisch, Habibul Ahsan, Brandon L. Pierce, Terho Lehtimäki, Dorret I. Boomsma, Bruce M. Psaty

    منشور في 2021
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  10. 10
    Mapping the dynamic genetic regulatory architecture of HLA genes at single-cell resolution

    Mapping the dynamic genetic regulatory architecture of HLA genes at single-cell resolution حسب Joyce B. Kang, Amber Shen, Saisriram Gurajala, Aparna Nathan, Laurie Rumker, Vitor R. C. Aguiar, Cristian Valencia, Kaitlyn A. Lagattuta, Fan Zhang, A. Helena Jonsson, Seyhan Yazar, José Alquicira‐Hernandez, Hamed Khalili, Ashwin N. Ananthakrishnan, Karthik A. Jagadeesh, Kushal K. Dey, Jennifer S. Albrecht, William Apruzzese, Nirmal K. Banda, Jennifer L. Barnas, Joan M. Bathon, Ami Ben‐Artzi, Brendan F. Boyce, David L. Boyle, S. Louis Bridges, Vivian P. Bykerk, Debbie Campbell, Hayley L. Carr, Arnold Ceponis, Adam Chicoine, Andrew Cordle, Michelle Curtis, Kevin D. Deane, Edward F. DiCarlo, Patrick Dunn, Andrew Filer, Gary S. Firestein, Lindsy Forbess, Laura Geraldino‐Pardilla, Susan M. Goodman, Ellen M. Gravallese, Peter K. Gregersen, Joel M. Guthridge, V. Michael Holers, Diane Horowitz, Laura B. Hughes, Kazuyoshi Ishigaki, Lionel B. Ivashkiv, Judith A. James, Gregory Keras, Ilya Korsunsky, Amit Lakhanpal, James A. Lederer, Myles Lewis, Zhihan J. Li, Yuhong Li, Katherine P. Liao, Arthur M. Mandelin, Ian Mantel, Kathryne E. Marks, Mark Maybury, Andrew McDavid, Mandy J. McGeachy, Joseph Mears, Nida Meednu, Nghia Millard, Larry W. Moreland, Saba Nayar, Alessandra Nerviani, Dana E. Orange, Harris Perlman, Costantino Pitzalis, Javier Rangel‐Moreno, Karim Raza, Yakir Reshef, Christopher T. Ritchlin, Felice Rivellese, William H. Robinson, Ilfita Sahbudin, Anvita Singaraju, Jennifer Seifert, Kamil Slowikowski, Melanie H. Smith, Darren Tabechian, Dagmar Scheel‐Toellner, Paul J. Utz, Gerald F. Watts, Kevin Wei, Kathryn Weinand, Dana Weisenfeld, Michael H. Weisman, Aaron Wyse, Qian Xiao, Zhu Zhu, Mark J. Daly, Ramnik J. Xavier, Laura T. Donlin, Jennifer H. Anolik, Joseph E. Powell, Deepak A. Rao

    منشور في 2023
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