Search Results - José A. Seoane

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  1. 1
    Multimodal data integration in early-stage breast cancer

    Multimodal data integration in early-stage breast cancer by Arnau Llinas-Bertran, Maria Butjosa-Espín, Vittoria Barberi, José A. Seoane

    Published 2025
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  2. 2
    A pathway-based data integration framework for prediction of disease progression

    A pathway-based data integration framework for prediction of disease progression by José A. Seoane, Ian N.M. Day, Tom R. Gaunt, Colin Campbell

    Published 2013
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  3. 3
    An individual-based approach to explain plasmid invasion in bacterial populations

    An individual-based approach to explain plasmid invasion in bacterial populations by José A. Seoane, Tatiana Yankelevich, Arnaud Dechesne, Brian V. Merkey, Claus Sternberg, Barth F. Smets

    Published 2010
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  4. 4
    Chromatin regulators mediate anthracycline sensitivity in breast cancer

    Chromatin regulators mediate anthracycline sensitivity in breast cancer by José A. Seoane, Jacob G. Kirkland, Jennifer L. Caswell‐Jin, Robert H. Crabtree, Christina Curtis

    Published 2019
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  5. 5
    Cell of Origin Influences Pancreatic Cancer Subtype

    Cell of Origin Influences Pancreatic Cancer Subtype by Brittany M. Flowers, Hang Xu, Abigail S. Mulligan, Kathryn J. Hanson, José A. Seoane, Hannes Vogel, Christina Curtis, Laura D. Wood, Laura D. Attardi

    Published 2021
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  6. 6
    Mapping the in vivo fitness landscape of lung adenocarcinoma tumor suppression in mice

    Mapping the in vivo fitness landscape of lung adenocarcinoma tumor suppression in mice by Zoe Rogers, Christopher D. McFarland, Ian P. Winters, José A. Seoane, Jennifer J. Brady, Stephanie Yoon, Christina Curtis, Dmitri A. Petrov, Monte M. Winslow

    Published 2018
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  7. 7
    ZFP281 drives a mesenchymal-like dormancy program in early disseminated breast cancer cells that prevents metastatic outgrowth in the lung

    ZFP281 drives a mesenchymal-like dormancy program in early disseminated breast cancer cells that prevents metastatic outgrowth in the lung by Ana Rita Nobre, Erica Dalla, Jihong Yang, Xin Huang, Lena Wullkopf, Emma Risson, Pedram Razghandi, Melisa Lopez Anton, Wei Zheng, José A. Seoane, Christina Curtis, Ephraim Kenigsberg, Jianlong Wang, Julio A. Aguirre‐Ghiso

    Published 2022
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  8. 8
    Quantitative evidence for early metastatic seeding in colorectal cancer

    Quantitative evidence for early metastatic seeding in colorectal cancer by Zheng Hu, Jie Ding, Zhicheng Ma, Ruping Sun, José A. Seoane, J. Scott Shaffer, Carlos J. Suarez, Anna S. Berghoff, Chiara Cremolini, Alfredo Falcone, Fotios Loupakis, Peter Birner, Matthias Preusser, Heinz‐Josef Lenz, Christina Curtis

    Published 2019
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  9. 9
    Metabolic Profiling Reveals a Dependency of Human Metastatic Breast Cancer on Mitochondrial Serine and One-Carbon Unit Metabolism

    Metabolic Profiling Reveals a Dependency of Human Metastatic Breast Cancer on Mitochondrial Serine and One-Carbon Unit Metabolism by Albert M. Li, Gregory S. Ducker, Yang Li, José A. Seoane, Yiren Xiao, Stavros Melemenidis, Yiren Zhou, Ling Liu, Sakari Vanharanta, Edward E. Graves, Erinn B. Rankin, Christina Curtis, Joan Massagué, Joshua D. Rabinowitz, Craig B. Thompson, Jiangbin Ye

    Published 2020
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  10. 10
    Inter-cellular CRISPR screens reveal regulators of cancer cell phagocytosis

    Inter-cellular CRISPR screens reveal regulators of cancer cell phagocytosis by Roarke A. Kamber, Yoko Nishiga, Bhek Morton, Allison Banuelos, Amira Barkal, Felipe Vences‐Catalán, Mingxin Gu, Daniel Fernández, José A. Seoane, David Yao, Katherine Liu, Sijie Lin, Kaitlyn Spees, Christina Curtis, Livnat Jerby‐Arnon, Irving L. Weissman, Julien Sage, Michael C. Bassik

    Published 2021
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  11. 11
    The m <sup>6</sup> A RNA demethylase FTO is a HIF-independent synthetic lethal partner with the VHL tumor suppressor

    The m <sup>6</sup> A RNA demethylase FTO is a HIF-independent synthetic lethal partner with the VHL tumor suppressor by Yiren Xiao, Kaushik N. Thakkar, Hongjuan Zhao, James P. Broughton, Yang Li, José A. Seoane, Anh N. Diep, Thomas J. Metzner, Rie von Eyben, David L. Dill, James D. Brooks, Christina Curtis, John T. Leppert, Jiangbin Ye, Donna M. Peehl, Amato J. Giaccia, Subarna Sinha, Erinn B. Rankin

    Published 2020
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  12. 12
    The Mettl3 epitranscriptomic writer amplifies p53 stress responses

    The Mettl3 epitranscriptomic writer amplifies p53 stress responses by Nitin Raj, Mengxiong Wang, José A. Seoane, Richard L. Zhao, Alyssa M. Kaiser, Nancie A. Moonie, János Demeter, Anthony M. Boutelle, Craig H. Kerr, Abigail S. Mulligan, Clare Moffatt, Shelya X. Zeng, Hua Lu, Maria Barna, Christina Curtis, Howard Y. Chang, Peter K. Jackson, Laura D. Attardi

    Published 2022
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  13. 13
    A p53 Super-tumor Suppressor Reveals a Tumor Suppressive p53-Ptpn14-Yap Axis in Pancreatic Cancer

    A p53 Super-tumor Suppressor Reveals a Tumor Suppressive p53-Ptpn14-Yap Axis in Pancreatic Cancer by Stephano S. Mello, Liz J. Valente, Nitin Raj, José A. Seoane, Brittany M. Flowers, Jacob McClendon, Kathryn Bieging-Rolett, Jonghyeob Lee, Danton Ivanochko, Margaret M. Kozak, Daniel T. Chang, Teri A. Longacre, Albert C. Koong, C.H. Arrowsmith, Seung K. Kim, Hannes Vogel, Laura D. Wood, Ralph H. Hruban, Christina Curtis, Laura D. Attardi

    Published 2017
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  14. 14
    A CRISPR/Cas9-Engineered <i>ARID1A</i>-Deficient Human Gastric Cancer Organoid Model Reveals Essential and Nonessential Modes of Oncogenic Transformation

    A CRISPR/Cas9-Engineered <i>ARID1A</i>-Deficient Human Gastric Cancer Organoid Model Reveals Essential and Nonessential Modes of Oncogenic Transformation by Yuan‐Hung Lo, Kevin S. Kolahi, Yuhong Du, Chiung-Ying Chang, A. Krokhotin, Ajay Nair, Walter D. Sobba, Kasper Karlsson, Sunny J. Jones, Teri A. Longacre, Amanda T. Mah, Bahar Tercan, Alexandra Sockell, Hang Xu, José A. Seoane, Jin Chen, Ilya Shmulevich, Jonathan S. Weissman, Christina Curtis, Andrea Califano, Haian Fu, Robert H. Crabtree, Calvin J. Kuo

    Published 2021
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  15. 15
    Zmat3 Is a Key Splicing Regulator in the p53 Tumor Suppression Program

    Zmat3 Is a Key Splicing Regulator in the p53 Tumor Suppression Program by Kathryn Bieging-Rolett, Alyssa M. Kaiser, David W. Morgens, Anthony M. Boutelle, José A. Seoane, Eric L. Van Nostrand, Changyu Zhu, Shauna L Houlihan, Stephano S. Mello, Brian A. Yee, Jacob McClendon, Sarah E. Pierce, Ian P. Winters, Mengxiong Wang, Andrew J. Connolly, Scott W. Lowe, Christina Curtis, G Yeo, Monte M. Winslow, Michael C. Bassik, Laura D. Attardi

    Published 2020
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  16. 16
    Dynamics of breast-cancer relapse reveal late-recurring ER-positive genomic subgroups

    Dynamics of breast-cancer relapse reveal late-recurring ER-positive genomic subgroups by Oscar M. Rueda, Stephen‐John Sammut, José A. Seoane, Suet‐Feung Chin, Jennifer L. Caswell‐Jin, Maurizio Callari, R.N. Batra, Bernard Pereira, Alejandra Bruna, H. Raza Ali, Elena Provenzano, Bin Liu, Michelle Parisien, Cheryl Gillett, Steven McKinney, Andrew R. Green, Leigh C. Murphy, Arnie Purushotham, Ian O. Ellis, Paul D.P. Pharoah, Cristina Rueda, Samuel Aparício, Carlos Caldas, Christina Curtis

    Published 2019
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  17. 17
    CRISPR screens in cancer spheroids identify 3D growth-specific vulnerabilities

    CRISPR screens in cancer spheroids identify 3D growth-specific vulnerabilities by Kyuho Han, Sarah E. Pierce, Amy Li, Kaitlyn Spees, Grace R. Anderson, José A. Seoane, Yuan‐Hung Lo, Michael M. Dubreuil, Micah Olivas, Roarke A. Kamber, Michael Wainberg, Kaja Kostyrko, Marcus R. Kelly, Maryam Yousefi, Scott W. Simpkins, David Yao, Keonil Lee, Calvin J. Kuo, Peter K. Jackson, E. Alejandro Sweet‐Cordero, Anshul Kundaje, Andrew J. Gentles, Christina Curtis, Monte M. Winslow, Michael C. Bassik

    Published 2020
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  18. 18
    The AMBRA1 E3 ligase adaptor regulates the stability of cyclin D

    The AMBRA1 E3 ligase adaptor regulates the stability of cyclin D by Andrea C. Chaikovsky, Chuan Li, Edwin E. Jeng, Samuel Loebell, Myung Chang Lee, Christopher W. Murray, Ran Cheng, János Demeter, Danielle L. Swaney, Sihan Chen, Billy W. Newton, Jeffrey R. Johnson, Alexandros P. Drainas, Yan Ting Shue, José A. Seoane, Preethi Srinivasan, Andy He, Akihiro Yoshida, Susan Q. Hipkins, Edel M. McCrea, Carson D. Poltorack, Nevan J. Krogan, J. Alan Diehl, Christina S. Kong, Peter K. Jackson, Christina Curtis, Dmitri A. Petrov, Michael C. Bassik, Monte M. Winslow, Julien Sage

    Published 2021
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  19. 19
    Molecular classification and biomarkers of clinical outcome in breast ductal carcinoma in situ: Analysis of TBCRC 038 and RAHBT cohorts

    Molecular classification and biomarkers of clinical outcome in breast ductal carcinoma in situ: Analysis of TBCRC 038 and RAHBT cohorts by Siri H. Strand, Belén Rivero‐Gutiérrez, Kathleen E. Houlahan, José A. Seoane, Lorraine King, Tyler Risom, Lunden Simpson, Sujay Vennam, Aziz Khan, Luis Cisneros, Timothy Hardman, Bryan Harmon, Fergus J. Couch, Kristalyn Gallagher, Mark Kilgore, Wei Shi, Angela DeMichele, Tari A. King, Priscilla F. McAuliffe, Julie R. Nangia, Joanna Lee, Jennifer F. Tseng, Anna Maria Storniolo, Alastair M. Thompson, Gaorav P. Gupta, Robyn Burns, Deborah J. Veis, Katherine DeSchryver, Chunfang Zhu, Magdalena Matusiak, Jason Wang, Shirley Zhu, Jen Tappenden, Daisy Yi Ding, Dadong Zhang, Jingqin Luo, Shu Jiang, Sushama Varma, Lauren Anderson, Cody Straub, Sucheta Srivastava, Christina Curtis, Rob Tibshirani, Michael Angelo, Allison Hall, Kouros Owzar, Kornélia Polyák, Carlo C. Maley, Jeffrey R. Marks, Graham A. Colditz, E. Shelley Hwang, Robert B. West

    Published 2022
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  20. 20
    The chromatin accessibility landscape of primary human cancers

    The chromatin accessibility landscape of primary human cancers by M. Ryan Corces, Jeffrey M. Granja, Shadi Shams, Bryan H. Louie, José A. Seoane, Wanding Zhou, Tiago C. Silva, Clarice S. Groeneveld, Christopher K. Wong, Seung Woo Cho, Ansuman T. Satpathy, Maxwell R. Mumbach, Katherine A. Hoadley, A. Gordon Robertson, Nathan C. Sheffield, Ina Felau, Mauro A. A. Castro, Benjamin P. Berman, Louis M. Staudt, Jean C. Zenklusen, Peter W. Laird, Christina Curtis, William J. Greenleaf, Howard Y. Chang, Rehan Akbani, Christopher C. Benz, Evan A. Boyle, Bradley M. Broom, Andrew D. Cherniack, Brian Craft, John A. Demchok, Ashley S. Doane, Olivier Elemento, Martin L. Ferguson, Mary J. Goldman, D. Neil Hayes, Jing He, Toshinori Hinoue, Marcin Imieliński, Steven J.M. Jones, Anab Kemal, Theo Knijnenburg, Anil Korkut, De‐Chen Lin, Yuexin Liu, M.K.A. Mensah, Gordon B. Mills, Vincent Reuter, André Schultz, Hui Shen, Jason P. Smith, Roy Tarnuzzer, Sheyla Trefflich, Linghua Wang, John N. Weinstein, Lindsay Westlake, Jin Xu, Liming Yang, Christina Yau, Zhao Yang, Jingchun Zhu

    Published 2018
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