Resultats de la cerca - Jorge Ruiz‐Orera

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  1. 1
    Conserved regions in long non-coding RNAs contain abundant translation and protein–RNA interaction signatures

    Conserved regions in long non-coding RNAs contain abundant translation and protein–RNA interaction signatures per Jorge Ruiz‐Orera, M. Mar Albà

    Publicat 2019
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  2. 2
    Long non-coding RNAs as a source of new peptides

    Long non-coding RNAs as a source of new peptides per Jorge Ruiz‐Orera, Xavier Messeguer, Juan A. Subirana, M. Mar Albà

    Publicat 2014
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  3. 3
    Ribosome profiling at isoform level reveals evolutionary conserved impacts of differential splicing on the proteome

    Ribosome profiling at isoform level reveals evolutionary conserved impacts of differential splicing on the proteome per Marina Reixachs‐Solé, Jorge Ruiz‐Orera, M. Mar Albà, Eduardo Eyras

    Publicat 2020
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  4. 4
    Translation of neutrally evolving peptides provides a basis for de novo gene evolution

    Translation of neutrally evolving peptides provides a basis for de novo gene evolution per Jorge Ruiz‐Orera, Pol Verdaguer-Grau, José Luis Villanueva‐Cañas, Xavier Messeguer, M. Mar Albà

    Publicat 2018
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  5. 5
    New Genes and Functional Innovation in Mammals

    New Genes and Functional Innovation in Mammals per José Luis Villanueva‐Cañas, Jorge Ruiz‐Orera, M. Isabel Agea, Maria Gallo, David Andreu, M. Mar Albà

    Publicat 2017
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  6. 6
    Origins of De Novo Genes in Human and Chimpanzee

    Origins of De Novo Genes in Human and Chimpanzee per Jorge Ruiz‐Orera, Jessica Hernandez‐Rodriguez, Cristina Chiva, Eduard Sabidó, Ivanela Kondova, Ronald E. Bontrop, Tomàs Marquès‐Bonet, M. Mar Albà

    Publicat 2015
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  7. 7
    Uncovering de novo gene birth in yeast using deep transcriptomics

    Uncovering de novo gene birth in yeast using deep transcriptomics per William R. Blevins, Jorge Ruiz‐Orera, Xavier Messeguer, Bernat Blasco-Moreno, José Luis Villanueva‐Cañas, Lorena Espinar, Juana Díez, Lucas B. Carey, M. Mar Albà

    Publicat 2021
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  8. 8
    Microproteins encoded by noncanonical ORFs are a major source of tumor-specific antigens in a liver cancer patient meta-cohort

    Microproteins encoded by noncanonical ORFs are a major source of tumor-specific antigens in a liver cancer patient meta-cohort per Marta E. Camarena, Patrick Theunissen, Marta Ruiz, Jorge Ruiz‐Orera, Beatriz Calvo-Serra, Robert Castelo, Carla Castro, Pablo Sarobe, Puri Fortes, Júlia Perera‐Bel, M. Mar Albà

    Publicat 2024
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  9. 9
    What Can Ribo-Seq, Immunopeptidomics, and Proteomics Tell Us About the Noncanonical Proteome?

    What Can Ribo-Seq, Immunopeptidomics, and Proteomics Tell Us About the Noncanonical Proteome? per John R. Prensner, Jennifer G. Abelin, Leron W. Kok, Karl R. Clauser, Jonathan M. Mudge, Jorge Ruiz‐Orera, Michal Bassani‐Sternberg, Robert L. Moritz, Eric W. Deutsch, Sebastiaan van Heesch

    Publicat 2023
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  10. 10
    Dynamic interplay between RPL3- and RPL3L-containing ribosomes modulates mitochondrial activity in the mammalian heart

    Dynamic interplay between RPL3- and RPL3L-containing ribosomes modulates mitochondrial activity in the mammalian heart per Ivan Milenkovic, Helaine Graziele Santos Vieira, Morghan C. Lucas, Jorge Ruiz‐Orera, Giannino Patone, Scott Kesteven, Jianxin Wu, Michael P. Feneley, Guadalupe Espadas, Eduard Sabidó, Norbert Hübner, Sebastiaan van Heesch, Mirko Völkers, Eva Maria Novoa

    Publicat 2023
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  11. 11
    pTINCR microprotein promotes epithelial differentiation and suppresses tumor growth through CDC42 SUMOylation and activation

    pTINCR microprotein promotes epithelial differentiation and suppresses tumor growth through CDC42 SUMOylation and activation per Olga Boix, Marion Martinez, Santiago Vidal, Marta Giménez-Alejandre, Lluís Palenzuela, Laura Lorenzo-Sanz, Laura Quevedo, Olivier Moscoso, Jorge Ruiz‐Orera, Pilar Ximénez‐Embún, Nikaoly Ciriaco, Paolo Nucíforo, Camille Stephan‐Otto Attolini, M. Mar Albà, Javier Muñoz, Tian V. Tian, Ignacio Varela, Ana Vivancos, Santiago Ramón y Cajal, Purificacı́on Muñoz, Carmen Rivas, María Abad

    Publicat 2022
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  12. 12
    Evolutionary origins and interactomes of human, young microproteins and small peptides translated from short open reading frames

    Evolutionary origins and interactomes of human, young microproteins and small peptides translated from short open reading frames per Clara-Louisa Sandmann, Jana Felicitas Schulz, Jorge Ruiz‐Orera, Marieluise Kirchner, Matthias Ziehm, Eleonora Adami, Maike Marczenke, Annabel Christ, Nina Liebe, Johannes F. W. Greiner, Aaron Schoenenberger, Michael B. Muecke, Ning Liang, Robert L. Moritz, Zhi Sun, Eric W. Deutsch, Michael Gotthardt, Jonathan M. Mudge, John R. Prensner, Thomas E. Willnow, Philipp Mertins, Sebastiaan van Heesch, Norbert Hübner

    Publicat 2023
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  13. 13
    Impairment of the ER/mitochondria compartment in human cardiomyocytes with PLN p.Arg14del mutation

    Impairment of the ER/mitochondria compartment in human cardiomyocytes with PLN p.Arg14del mutation per Friederike Cuello, Anika E. Knaust, Umber Saleem, Malte Loos, Janice Raabe, Diogo Mosqueira, Sandra D. Laufer, Michaela Schweizer, Petra van der Kraak, Frederik Flenner, Bärbel Ulmer, Ingke Braren, Xiaoke Yin, Konstantinos Theofilatos, Jorge Ruiz‐Orera, Giannino Patone, Birgit Klampe, Thomas G. Schulze, Angelika Piasecki, Yigal M. Pinto, Aryan Vink, Norbert Hübner, Siân E. Harding, Manuel Mayr, Chris Denning, Thomas Eschenhagen, Arne Hansen

    Publicat 2021
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  14. 14
    Translation of non-canonical open reading frames as a cancer cell survival mechanism in childhood medulloblastoma

    Translation of non-canonical open reading frames as a cancer cell survival mechanism in childhood medulloblastoma per Damon A. Hofman, Jorge Ruiz‐Orera, Ian Yannuzzi, Rakesh Murugesan, Adam Brown, Karl R. Clauser, Alexandra L. Condurat, Jip T. van Dinter, Sem A.G. Engels, Amy Goodale, Jasper van der Lugt, Tanaz Abid, Li Wang, Kevin N. Zhou, Jayne Vogelzang, Keith L. Ligon, Timothy N. Phoenix, Jennifer A. Roth, David E. Root, Norbert Hübner, Todd R. Golub, Pratiti Bandopadhayay, Sebastiaan van Heesch, John R. Prensner

    Publicat 2024
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  15. 15
    Detection of human unannotated microproteins by mass spectrometry-based proteomics: a community assessment

    Detection of human unannotated microproteins by mass spectrometry-based proteomics: a community assessment per Aaron Wacholder, Eric W. Deutsch, Leron W. Kok, Jip T. van Dinter, Jiwon Lee, James C. Wright, Sébastien Leblanc, Ayodya H Jayatissa, Kevin Jiang, Ihor Arefiev, Kevin Cao, Francis Bourassa, Félix-Antoine Trifiro, Michal Bassani‐Sternberg, Pavel V. Baranov, Annelies Bogaert, Sonia Chothani, Ivo Fierro-Monti, Daria Fijałkowska, Kris Gevaert, Norbert Hübner, Jonathan M. Mudge, Jorge Ruiz‐Orera, Jana Felicitas Schulz, Juan Antonio Vizcaíno, John R. Prensner, Marie A. Brunet, Thomas F. Martínez, Sarah A. Slavoff, Xavier Roucou, Jyoti S. Choudhary, Sebastiaan van Heesch, Robert L. Moritz, Anne‐Ruxandra Carvunis

    Publicat 2025
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  16. 16
    High-quality peptide evidence for annotating non-canonical open reading frames as human proteins

    High-quality peptide evidence for annotating non-canonical open reading frames as human proteins per Eric W. Deutsch, Leron W. Kok, Jonathan M. Mudge, Jorge Ruiz‐Orera, Ivo Fierro-Monti, Zhi Sun, Jennifer G. Abelin, M. Mar Albà, Julie L. Aspden, Ariel Bazzini, Elspeth A. Bruford, Marie A. Brunet, Lorenzo Calviello, Steven A. Carr, Anne‐Ruxandra Carvunis, Sonia Chothani, Jim Clauwaert, Kellie Dean, Pouya Faridi, Adam Frankish, Norbert Hübner, Nicholas T. Ingolia, Michele Magrane, María Martin, Thomas F. Martínez, Gerben Menschaert, Uwe Ohler, Sandra Orchard, Owen J. L. Rackham, Xavier Roucou, Sarah A. Slavoff, Eivind Valen, Aaron Wacholder, Jonathan S. Weissman, Wei Wu, Zhi Xie, Jyoti S. Choudhary, Michal Bassani‐Sternberg, Juan Antonio Vizcaíno, Nicola Ternette, Robert L. Moritz, John R. Prensner, Sebastiaan van Heesch

    Publicat 2024
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  17. 17
    Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx

    Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx per Federico Abascal, André Corvelo, Fernando Cruz, José Luis Villanueva‐Cañas, Anna Vlasova, Marina Marcet‐Houben, Begoña Martínez‐Cruz, Jade Yu Cheng, Pablo Prieto, Vı́ctor Quesada, Javier Quilez, Gang Li, F. García, Miriam Rubio-Camarillo, Leonor Frías, Paolo Ribeca, Salvador Capella-Gutiérrez, J. M. Rodríguez, Francisco Câmara, Ernesto Lowy, Luca Cozzuto, Ionas Erb, Michael L. Tress, Jose L. Rodriguez-Ales, Jorge Ruiz‐Orera, Ferrán Reverter, Mireia Casas‐Marce, Laura García-España Soriano, Javier R. Arango, Sophia Derdak, Beatriz Galán, Julie Blanc, Marta Gut, Belén Lorente-Galdós, Marta Andrés-Nieto, Carlos López‐Otín, Alfonso Valencia, Marta Gut, José L. Garcı́a, Roderic Guigó, William J. Murphy, Aurora Ruiz‐Herrera, Tomàs Marquès‐Bonet, Guglielmo Roma, Cédric Notredame, Thomas Mailund, M. Mar Albà, Toni Gabaldón, Tyler Alioto, José A. Godoy

    Publicat 2016
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  18. 18
    Pathogenic variants damage cell composition and single cell transcription in cardiomyopathies

    Pathogenic variants damage cell composition and single cell transcription in cardiomyopathies per Daniel Reichart, Eric L. Lindberg, Henrike Maatz, Antonio M. A. Miranda, Anissa Viveiros, Nikolay Shvetsov, Anna Gärtner, Emily R. Nadelmann, Michael Lee, Kazumasa Kanemaru, Jorge Ruiz‐Orera, Viktoria Strohmenger, Daniel M. DeLaughter, Giannino Patone, Hao Zhang, Andrew Woehler, Christoph Lippert, Yuri Kim, Eleonora Adami, Joshua M. Gorham, Sam N. Barnett, Kemar Brown, Rachel Buchan, Rasheda A. Chowdhury, Chrystalla Constantinou, James Cranley, Leanne E. Felkin, Henrik Fox, Ahla Ghauri, Jan Gummert, Masatoshi Kanda, Ruoyan Li, Lukáš Mach, Barbara McDonough, Sara Samari, Farnoush Shahriaran, Clarence Yapp, Caroline Stanasiuk, Pantazis Theotokis, Fabian J. Theis, Antoon van den Bogaerdt, Hiroko Wakimoto, James S. Ware, Catherine L. Worth, Paul J.R. Barton, Young‐Ae Lee, Sarah A. Teichmann, Hendrik Milting, Michela Noseda, Gavin Y. Oudit, Matthias Heinig, Jonathan G. Seidman, Norbert Hübner, Christine E. Seidman

    Publicat 2022
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