Search Results - Jonathan M. Carlson

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  1. 1
    SCOPE: a web server for practical de novo motif discovery

    SCOPE: a web server for practical de novo motif discovery by Jonathan M. Carlson, Arijit Chakravarty, Charles E. DeZiel, Robert Gross

    Published 2007
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  2. 2
    Additive Contribution of HLA Class I Alleles in the Immune Control of HIV-1 Infection

    Additive Contribution of HLA Class I Alleles in the Immune Control of HIV-1 Infection by Alasdair Leslie, Philippa C. Matthews, Jennifer Listgarten, Jonathan M. Carlson, Carl Kadie, Thumbi Ndung’u, Christian Brander, Hoosen Coovadia, Bruce D. Walker, David Heckerman, Philip Goulder

    Published 2010
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  3. 3
    Frequent and Variable Cytotoxic-T-Lymphocyte Escape-Associated Fitness Costs in the Human Immunodeficiency Virus Type 1 Subtype B Gag Proteins

    Frequent and Variable Cytotoxic-T-Lymphocyte Escape-Associated Fitness Costs in the Human Immunodeficiency Virus Type 1 Subtype B Gag Proteins by Christian L. Boutwell, Jonathan M. Carlson, Tien-Ho Lin, Aaron Seese, Karen A. Power, Jian Peng, Yanhua Tang, Zabrina L. Brumme, David Heckerman, Arne Schneidewind, Todd M. Allen

    Published 2013
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  4. 4
    Risk of rapid evolutionary escape from biomedical interventions targeting SARS-CoV-2 spike protein

    Risk of rapid evolutionary escape from biomedical interventions targeting SARS-CoV-2 spike protein by Debra Van Egeren, Alexander Novokhodko, Madison Stoddard, Uyen Tran, Bruce R. Zetter, Michael S. Rogers, Bradley L. Pentelute, Jonathan M. Carlson, Mark S. Hixon, Diane Joseph‐McCarthy, Arijit Chakravarty

    Published 2021
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  5. 5
    Human leukocyte antigen-specific polymorphisms in HIV-1 Gag and their association with viral load in chronic untreated infection

    Human leukocyte antigen-specific polymorphisms in HIV-1 Gag and their association with viral load in chronic untreated infection by Zabrina L. Brumme, Iris Tao, Sharon Szeto, Chanson J. Brumme, Jonathan M. Carlson, Dennison Chan, Carl Kadie, Nicole Frahm, Christian Brander, Bruce D. Walker, David Heckerman, P. Richard Harrigan

    Published 2008
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  6. 6
    Phylogenetic Dependency Networks: Inferring Patterns of CTL Escape and Codon Covariation in HIV-1 Gag

    Phylogenetic Dependency Networks: Inferring Patterns of CTL Escape and Codon Covariation in HIV-1 Gag by Jonathan M. Carlson, Zabrina L. Brumme, Christine Rousseau, Chanson J. Brumme, Philippa C. Matthews, Carl Kadie, James I. Mullins, Bruce D. Walker, P. Richard Harrigan, Philip Goulder, David Heckerman

    Published 2008
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  7. 7
    Widespread Impact of HLA Restriction on Immune Control and Escape Pathways of HIV-1

    Widespread Impact of HLA Restriction on Immune Control and Escape Pathways of HIV-1 by Jonathan M. Carlson, Jennifer Listgarten, Nico Pfeifer, Vincent Y. F. Tan, Carl Kadie, Bruce D. Walker, Thumbi Ndung’u, Roger Shapiro, John Frater, Zabrina L. Brumme, Philip Goulder, David Heckerman

    Published 2012
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  8. 8
    HIV-1 adaptation to NK-cell-mediated immune pressure

    HIV-1 adaptation to NK-cell-mediated immune pressure by Galit Alter, David Heckerman, Arne Schneidewind, Lena Fadda, Carl Kadie, Jonathan M. Carlson, Cesar Oniangue-Ndza, Maureen P. Martin, Bin Li, Salim I. Khakoo, Mary Carrington, Todd M. Allen, Marcus Altfeld

    Published 2011
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  9. 9
    Host-Specific Adaptation of HIV-1 Subtype B in the Japanese Population

    Host-Specific Adaptation of HIV-1 Subtype B in the Japanese Population by Takayuki Chikata, Jonathan M. Carlson, Yoshiko Tamura, Mohamed Ali Borghan, Takuya Naruto, Masao Hashimoto, Hayato Murakoshi, Anh Q. Le, S. Mallal, Mina John, Hiroyuki Gatanaga, Shinichi Oka, Zabrina L. Brumme, Masafumi Takiguchi

    Published 2014
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  10. 10
    Large-scale statistical mapping of T-cell receptor β sequences to Human Leukocyte Antigens

    Large-scale statistical mapping of T-cell receptor β sequences to Human Leukocyte Antigens by H. Jabran Zahid, Ruth Taniguchi, Peter Ebert, I‐Ting Chow, Chris Gooley, Jinpeng Lv, Lorenzo Pisani, Mikaela Rusnak, Rebecca Elyanow, Hiroyuki Takamatsu, Wenyu Zhou, Julia Greissl, Harlan Robins, Jonathan M. Carlson

    Published 2024
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  11. 11
    HIV Control Is Mediated in Part by CD8 <sup>+</sup> T-Cell Targeting of Specific Epitopes

    HIV Control Is Mediated in Part by CD8 <sup>+</sup> T-Cell Targeting of Specific Epitopes by Florencia Pereyra, David Heckerman, Jonathan M. Carlson, Carl Kadie, Damien Z. Soghoian, Daniel Karel, Ariel Goldenthal, Oliver B. Davis, Charles E. DeZiel, Tien-Ho Lin, Jian Peng, Alicja Piechocka, Mary Carrington, Bruce D. Walker

    Published 2014
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  12. 12
    Viral adaptation to immune selection pressure by HLA class I–restricted CTL responses targeting epitopes in HIV frameshift sequences

    Viral adaptation to immune selection pressure by HLA class I–restricted CTL responses targeting epitopes in HIV frameshift sequences by Christoph T. Berger, Jonathan M. Carlson, Chanson J. Brumme, Kari L. Hartman, Zabrina L. Brumme, Leah M. Henry, Pamela C. Rosato, Alicja Piechocka‐Trocha, Mark A. Brockman, P. Richard Harrigan, David Heckerman, Daniel E. Kaufmann, Christian Brander

    Published 2010
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  13. 13
    Transmission of HIV-1 Gag immune escape mutations is associated with reduced viral load in linked recipients

    Transmission of HIV-1 Gag immune escape mutations is associated with reduced viral load in linked recipients by Paul Goepfert, Wendy Lumm, Paul Farmer, Philippa C. Matthews, Andrew J. Prendergast, Jonathan M. Carlson, Cynthia A. Derdeyn, Jianming Tang, Richard A. Kaslow, Anju Bansal, Karina Yusim, David Heckerman, Joseph Mulenga, Susan Allen, Philip Goulder, Eric Hunter

    Published 2008
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  14. 14
    Prevalence and Characteristics of Hepatitis B Virus (HBV) Coinfection among HIV-Positive Women in South Africa and Botswana

    Prevalence and Characteristics of Hepatitis B Virus (HBV) Coinfection among HIV-Positive Women in South Africa and Botswana by Philippa C. Matthews, Apostolos Beloukas, Amna Malik, Jonathan M. Carlson, Pieter Jooste, Anthony Ogwu, Roger Shapiro, Lynn Riddell, Fabian Chen, Graz Luzzi, Manjeetha Jaggernath, Gerald Jesuthasan, Katie Jeffery, Thumbi Ndung’u, Philip Goulder, Anna María Geretti, Paul Klenerman

    Published 2015
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  15. 15
    Evidence of Differential HLA Class I-Mediated Viral Evolution in Functional and Accessory/Regulatory Genes of HIV-1

    Evidence of Differential HLA Class I-Mediated Viral Evolution in Functional and Accessory/Regulatory Genes of HIV-1 by Zabrina L. Brumme, Chanson J. Brumme, David Heckerman, Bette Korber, Marcus Daniels, Jonathan M. Carlson, Carl Kadie, Tanmoy Bhattacharya, Celia Chui, James Szinger, Theresa Mo, Robert S. Hogg, Julio Montaner, Nicole Frahm, Christian Brander, Bruce D. Walker, P. Richard Harrigan

    Published 2007
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  16. 16
    CD8 T cell response and evolutionary pressure to HIV-1 cryptic epitopes derived from antisense transcription

    CD8 T cell response and evolutionary pressure to HIV-1 cryptic epitopes derived from antisense transcription by Anju Bansal, Jonathan M. Carlson, Jiyu Yan, Olusimidele T. Akinsiku, Malinda Schaefer, Steffanie Sabbaj, Anne Bet, David N. Levy, Sonya L. Heath, Jianming Tang, Richard A. Kaslow, Bruce D. Walker, Thumbi Ndung’u, Philip Goulder, David Heckerman, Eric Hunter, Paul Goepfert

    Published 2010
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  17. 17
    Protective HLA Class I Alleles That Restrict Acute-Phase CD8 <sup>+</sup> T-Cell Responses Are Associated with Viral Escape Mutations Located in Highly Conserved Regions of Human Immunodeficiency Virus Type 1

    Protective HLA Class I Alleles That Restrict Acute-Phase CD8 <sup>+</sup> T-Cell Responses Are Associated with Viral Escape Mutations Located in Highly Conserved Regions of Human I... by Yaoyu E. Wang, Bin Li, Jonathan M. Carlson, Hendrik Streeck, Adrianne D. Gladden, Robert L. Goodman, Arne Schneidewind, Karen A. Power, Ildikó Tóth, Nicole Frahm, Galit Alter, Christian Brander, Mary Carrington, Bruce D. Walker, Marcus Altfeld, David Heckerman, Todd M. Allen

    Published 2008
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  18. 18
    Gag-Protease-Mediated Replication Capacity in HIV-1 Subtype C Chronic Infection: Associations with HLA Type and Clinical Parameters

    Gag-Protease-Mediated Replication Capacity in HIV-1 Subtype C Chronic Infection: Associations with HLA Type and Clinical Parameters by Jaclyn K. Wright, Zabrina L. Brumme, Jonathan M. Carlson, David Heckerman, Carl Kadie, Chanson J. Brumme, Bingxia Wang, Elena Losina, Toshiyuki Miura, Fundisiwe Chonco, Mary van der Stok, Zenele Mncube, Karen Bishop, Philip Goulder, Bruce D. Walker, Mark A. Brockman, Thumbi Ndung’u

    Published 2010
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  19. 19
    Central Role of Reverting Mutations in HLA Associations with Human Immunodeficiency Virus Set Point

    Central Role of Reverting Mutations in HLA Associations with Human Immunodeficiency Virus Set Point by Philippa C. Matthews, Andrew J. Prendergast, Alasdair Leslie, Hayley Crawford, Rebecca P. Payne, Christine Rousseau, Morgane Rolland, Isobella Honeyborne, Jonathan M. Carlson, Carl Kadie, Christian Brander, Karen Bishop, Nonkululeko Mlotshwa, James I. Mullins, Hoosen Coovadia, Thumbi Ndung’u, Bruce D. Walker, David Heckerman, Philip Goulder

    Published 2008
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  20. 20
    HIV Control through a Single Nucleotide on the HLA-B Locus

    HIV Control through a Single Nucleotide on the HLA-B Locus by Henrik N. Kløverpris, Mikkel Harndahl, Alasdair Leslie, Jonathan M. Carlson, Nasreen Ismail, Mary van der Stok, Kuan-Hsiang Gary Huang, Fabian Chen, Lynn Riddell, Dewald Steyn, Dominique Goedhals, Cloete van Vuuren, John Frater, Bruce D. Walker, Mary Carrington, Thumbi Ndung’u, Søren Buus, Philip Goulder

    Published 2012
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