Søgeresultater - Jonathan Crabtree

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  1. 1
    Distinguishing potential bacteria-tumor associations from contamination in a secondary data analysis of public cancer genome sequence data

    Distinguishing potential bacteria-tumor associations from contamination in a secondary data analysis of public cancer genome sequence data af Kelly Robinson, Jonathan Crabtree, John S. Mattick, Kathleen E. Anderson, Julie C. Dunning Hotopp

    Udgivet 2017
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  2. 2
    Using Sybil for interactive comparative genomics of microbes on the web

    Using Sybil for interactive comparative genomics of microbes on the web af David R. Riley, Samuel V. Angiuoli, Jonathan Crabtree, Julie C. Dunning Hotopp, Hervé Tettelin

    Udgivet 2011
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  3. 3
    A comprehensive non-redundant gene catalog reveals extensive within-community intraspecies diversity in the human vagina

    A comprehensive non-redundant gene catalog reveals extensive within-community intraspecies diversity in the human vagina af Bing Ma, Michael France, Jonathan Crabtree, Johanna B. Holm, Michael S. Humphrys, Rebecca M. Brotman, Jacques Ravel

    Udgivet 2020
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  4. 4
    Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium

    Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium af Rashmi Sinha, Galeb Abu-Ali, Emily Vogtmann, Anthony A. Fodor, Boyu Ren, Amnon Amir, Emma Schwager, Jonathan Crabtree, Bing Ma, Christian C. Abnet, Rob Knight, Owen White, Curtis Huttenhower

    Udgivet 2017
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  5. 5
    Comparative Genomics of<i>Brassica oleracea</i>and<i>Arabidopsis thaliana</i>Reveal Gene Loss, Fragmentation, and Dispersal after Polyploidy

    Comparative Genomics of<i>Brassica oleracea</i>and<i>Arabidopsis thaliana</i>Reveal Gene Loss, Fragmentation, and Dispersal after Polyploidy af Christopher D. Town, Foo Cheung, Rama Maiti, Jonathan Crabtree, Brian J. Haas, Jennifer R. Wortman, Erin Hine, Ryan Althoff, Tamara S. Arbogast, Luke J. Tallon, Marielle Vigouroux, Martin Trick, Ian Bancroft

    Udgivet 2006
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  6. 6
    The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community

    The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community af Martha B. Arnaud, Marcus C. Chibucos, Maria C. Costanzo, Jonathan Crabtree, Diane O. Inglis, Adil Lotia, Joshua Orvis, Prachi Shah, Marek S. Skrzypek, Gail Binkley, Stuart R. Miyasato, Jennifer R. Wortman, Gavin Sherlock

    Udgivet 2009
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  7. 7
    Functional Dynamics of the Gut Microbiome in Elderly People during Probiotic Consumption

    Functional Dynamics of the Gut Microbiome in Elderly People during Probiotic Consumption af Emiley A. Eloe‐Fadrosh, Arthur Brady, Jonathan Crabtree, Elliott F. Drábek, Bing Ma, Anup Mahurkar, Jacques Ravel, Miriam Haverkamp, Anne‐Maria Fiorino, Christine Botelho, Irina Andreyeva, Patricia L. Hibberd, Claire M. Fraser

    Udgivet 2015
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  8. 8
    The Pangenome Structure of<i>Escherichia coli</i>: Comparative Genomic Analysis of<i>E. coli</i>Commensal and Pathogenic Isolates

    The Pangenome Structure of<i>Escherichia coli</i>: Comparative Genomic Analysis of<i>E. coli</i>Commensal and Pathogenic Isolates af David A. Rasko, M. J. Rosovitz, Garry S. A. Myers, Emmanuel F. Mongodin, W. Florian Fricke, Pawel Gajer, Jonathan Crabtree, Mohammed Sebaihia, Nicholas R. Thomson, Roy R. Chaudhuri, Ian R. Henderson, Vanessa Sperandio, Jacques Ravel

    Udgivet 2008
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  9. 9
    Ergatis: a web interface and scalable software system for bioinformatics workflows

    Ergatis: a web interface and scalable software system for bioinformatics workflows af Joshua Orvis, Jonathan Crabtree, Kevin Galens, Aaron Gussman, Jason Inman, Eduardo Lee, Sreenath Nampally, David R. Riley, Jaideep P. Sundaram, Victor Felix, Brett R. Whitty, Anup Mahurkar, Jennifer R. Wortman, Owen White, Samuel V. Angiuoli

    Udgivet 2010
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  10. 10
    Strains, functions and dynamics in the expanded Human Microbiome Project

    Strains, functions and dynamics in the expanded Human Microbiome Project af Jason Lloyd‐Price, Anup Mahurkar, Ali Rahnavard, Jonathan Crabtree, Joshua Orvis, A. Brantley Hall, Arthur Brady, Heather H. Creasy, Carrie McCracken, Michelle Giglio, Daniel McDonald, Eric A. Franzosa, Rob Knight, Owen White, Curtis Huttenhower

    Udgivet 2017
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  11. 11
    Erratum: Strains, functions and dynamics in the expanded Human Microbiome Project

    Erratum: Strains, functions and dynamics in the expanded Human Microbiome Project af Jason Lloyd‐Price, Anup Mahurkar, Ali Rahnavard, Jonathan Crabtree, Joshua Orvis, A. Brantley Hall, Arthur Brady, Heather H. Creasy, Carrie McCracken, Michelle Giglio, Daniel McDonald, Eric A. Franzosa, Rob Knight, Owen White, Curtis Huttenhower

    Udgivet 2017
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  12. 12
    Sub-Telomere Directed Gene Expression during Initiation of Invasive Aspergillosis

    Sub-Telomere Directed Gene Expression during Initiation of Invasive Aspergillosis af Andrew McDonagh, Natalie D. Fedorova, Jonathan Crabtree, Yan Yu, Sun Kim, Dan Chen, Omar Loss, Timothy C. Cairns, Gustavo H. Goldman, Darius Armstrong‐James, Ken Haynes, Hubertus Haas, Markus Schrettl, Gregory S. May, William C. Nierman, Elaine Bignell

    Udgivet 2008
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  13. 13
    The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources

    The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources af M. B. Arnaud, Gustavo C. Cerqueira, Diane O. Inglis, Marek S. Skrzypek, Jill Binkley, Marcus C. Chibucos, Jonathan Crabtree, Catherine Howarth, Joshua Orvis, Prachi Shah, F. Wymore, Gail Binkley, Stuart R. Miyasato, Matt Simison, Gavin Sherlock, Jennifer R. Wortman

    Udgivet 2011
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  14. 14
    Genomic Epidemiology of the Haitian Cholera Outbreak: a Single Introduction Followed by Rapid, Extensive, and Continued Spread Characterized the Onset of the Epidemic

    Genomic Epidemiology of the Haitian Cholera Outbreak: a Single Introduction Followed by Rapid, Extensive, and Continued Spread Characterized the Onset of the Epidemic af Mark Eppinger, Talima Pearson, Sara S. K. Koenig, Ofori N. Pearson, Nathan Hicks, Sonia Agrawal, Fatemeh Sanjar, Kevin Galens, S. J. Daugherty, Jonathan Crabtree, René S. Hendriksen, Lance B. Price, Bishnu Prasad Upadhyay, Geeta Shakya, Claire M. Fraser, Jacques Ravel, Paul Keim

    Udgivet 2014
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  15. 15
    Draft genome sequence of the oilseed species Ricinus communis

    Draft genome sequence of the oilseed species Ricinus communis af Agnes P. Chan, Jonathan Crabtree, Qi Zhao, Hernán Lorenzi, Joshua Orvis, Daniela Puiu, Admasu Melake‐Berhan, Kristine Jones, Julia C. Redman, Grace Chen, Edgar B. Cahoon, Melaku Gedil, Mario Stanke, Brian J. Haas, Jennifer R. Wortman, Claire M. Fraser, Jacques Ravel, Pablo D. Rabinowicz

    Udgivet 2010
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  16. 16
    Continuing Evolution of Burkholderia mallei Through Genome Reduction and Large-Scale Rearrangements

    Continuing Evolution of Burkholderia mallei Through Genome Reduction and Large-Scale Rearrangements af Liliana Losada, Catherine M. Ronning, David DeShazer, Donald E. Woods, Natalie D. Fedorova, Sun Kim, Svetlana A. Shabalina, Talima Pearson, Lauren Brinkac, Patrick Tan, Tannistha Nandi, Jonathan Crabtree, Jonathan H. Badger, Steve M. Beckstrom-Sternberg, Muhammad Saqib, Steven E. Schutzer, Paul Keim, William C. Nierman

    Udgivet 2010
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  17. 17
    The Plasmodium genome database

    The Plasmodium genome database af Jessica C. Kissinger, Brian P. Brunk, Jonathan Crabtree, Martin Fraunholz, Bindu Gajria, Arthur J. Milgram, David Pearson, Jonathan Schug, Amit Bahl, Sharon J. Diskin, Hagai Ginsburg, Gregory R. Grant, Dinesh Gupta, Philip T. Labo, Li Li, Matthew Mailman, Shannon K. McWeeney, Patricia L. Whetzel, Christian J. Stoeckert, David S. Roos

    Udgivet 2002
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  18. 18
    An integrated genomic and transcriptomic survey of mucormycosis-causing fungi

    An integrated genomic and transcriptomic survey of mucormycosis-causing fungi af Marcus C. Chibucos, Sameh S. M. Soliman, Teclegiorgis Gebremariam, Hong-Kyu Lee, Sean C. Daugherty, Joshua Orvis, Amol C. Shetty, Jonathan Crabtree, Tracy H. Hazen, Kizee A. Etienne, Priti Kumari, Timothy D. O’Connor, David A. Rasko, Scott G. Filler, Claire M. Fraser, Shawn R. Lockhart, Christopher D. Skory, Ashraf S. Ibrahim, Vincent M. Bruno

    Udgivet 2016
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  19. 19
    Global Phylogeny of<i>Mycobacterium tuberculosis</i>Based on Single Nucleotide Polymorphism (SNP) Analysis: Insights into Tuberculosis Evolution, Phylogenetic Accuracy of Other DNA Fingerprinting Systems, and Recommendations for a Minimal Standard SNP Set

    Global Phylogeny of<i>Mycobacterium tuberculosis</i>Based on Single Nucleotide Polymorphism (SNP) Analysis: Insights into Tuberculosis Evolution, Phylogenetic Accuracy of Other DNA... af Ingrid Filliol, Alifiya S. Motiwala, Magali Cavatore, Weihong Qi, Manzour Hernando Hazbón, Miriam Bobadilla-del-Valle, Janet Fyfe, Lourdes García‐García, Nalin Rastogi, Christophe Sola, Thierry Zozio, Marta Inírida Guerrero, Clara Inés León, Jonathan Crabtree, Samuel V. Angiuoli, Kathleen D. Eisenach, Rıza Durmaz, Moses Joloba, Adrián Rendón, José Sifuentes‐Osornio, Alfredo Ponce‐de‐León, M. Donald Cave, Robert Fleischmann, Thomas S. Whittam, David Alland

    Udgivet 2005
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  20. 20
    Genome Sequence of Babesia bovis and Comparative Analysis of Apicomplexan Hemoprotozoa

    Genome Sequence of Babesia bovis and Comparative Analysis of Apicomplexan Hemoprotozoa af Kelly A. Brayton, Audrey O.T. Lau, David R. Herndon, Linda I. Hannick, Lowell S. Kappmeyer, Shawn J. Berens, Shelby Bidwell, Wendy C. Brown, Jonathan Crabtree, Doug Fadrosh, Tamara Feldblum, Heather A. Forberger, Brian J. Haas, Jeanne M. Howell, Hoda Khouri, Hean Koo, David J. Mann, Junzo Norimine, Ian T. Paulsen, Diana Radune, Qinghu Ren, Roger K Smith, Carlos E. Suárez, Owen White, Jennifer R. Wortman, Donald P. Knowles, Terry F. McElwain, Vishvanath Nene

    Udgivet 2007
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