Search Results - Jon Magnuson

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  1. 1
    Multiplexed CRISPR-Cas9-Based Genome Editing of <i>Rhodosporidium toruloides</i>

    Multiplexed CRISPR-Cas9-Based Genome Editing of <i>Rhodosporidium toruloides</i> by Peter B. Otoupal, Masakazu Ito, Adam P. Arkin, Jon Magnuson, John M. Gladden, Jeffrey M. Skerker

    Published 2019
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  2. 2
    A new approach to Cas9-based genome editing in Aspergillus niger that is precise, efficient and selectable

    A new approach to Cas9-based genome editing in Aspergillus niger that is precise, efficient and selectable by Laure Leynaud-Kieffer, S.C. Curran, Irene Kim, Jon Magnuson, John Gladden, Scott Baker, Blake A. Simmons

    Published 2019
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  3. 3
    Fueling the future with fungal genomics

    Fueling the future with fungal genomics by Igor V. Grigoriev, Daniel Cullen, Stephen B. Goodwin, David S. Hibbett, Thomas W. Jeffries, Christian P. Kubicek, Cheryl R. Kuske, Jon Magnuson, Francis Martin, Joseph W. Spatafora, Adrian Tsang, Scott Baker

    Published 2011
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  4. 4
    The Microbial Opsin Family of Optogenetic Tools

    The Microbial Opsin Family of Optogenetic Tools by Feng Zhang, Johannes Vierock, Ofer Yizhar, Lief E. Fenno, Satoshi P. Tsunoda, Arash Kianianmomeni, Matthias Prigge, A. Berndt, John C. Cushman, Jürgen E.W. Polle, Jon Magnuson, Peter Hegemann, Karl Deisseroth

    Published 2011
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  5. 5
    Regulation of Yeast-to-Hyphae Transition in Yarrowia lipolytica

    Regulation of Yeast-to-Hyphae Transition in Yarrowia lipolytica by Kyle Pomraning, Erin Bredeweg, Eduard J. Kerkhoven, Kerrie Barry, Sajeet Haridas, Hope Hundley, Kurt LaButti, Anna Lipzen, Mi Yan, Jon Magnuson, Blake A. Simmons, Igor V. Grigoriev, Jens Nielsen, Scott Baker

    Published 2018
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  6. 6
    A toolset of constitutive promoters for metabolic engineering of<i>Rhodosporidium toruloides</i>

    A toolset of constitutive promoters for metabolic engineering of<i>Rhodosporidium toruloides</i> by Luísa Czamanski Nora, Maren Wehrs, Joonhoon Kim, Jan‐Fang Cheng, Angela Tarver, Blake A. Simmons, Jon Magnuson, Miranda Harmon-Smith, Rafael Silva‐Rocha, John M. Gladden, Aindrila Mukhopadhyay, Jeffrey M. Skerker, James Kirby

    Published 2019
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  7. 7
    A toolset of constitutive promoters for metabolic engineering of Rhodosporidium toruloides

    A toolset of constitutive promoters for metabolic engineering of Rhodosporidium toruloides by Luísa Czamanski Nora, Maren Wehrs, Joonhoon Kim, Jan‐Fang Cheng, Angela Tarver, Blake A. Simmons, Jon Magnuson, Miranda Harmon-Smith, Rafael Silva‐Rocha, John M. Gladden, Aindrila Mukhopadhyay, Jeffrey M. Skerker, James Kirby

    Published 2019
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  8. 8
    Multi-Omics Driven Metabolic Network Reconstruction and Analysis of Lignocellulosic Carbon Utilization in Rhodosporidium toruloides

    Multi-Omics Driven Metabolic Network Reconstruction and Analysis of Lignocellulosic Carbon Utilization in Rhodosporidium toruloides by Joonhoon Kim, Samuel T. Coradetti, Young‐Mo Kim, Yuqian Gao, Junko Yaegashi, Jeremy Zucker, Nathalie Munoz Munoz, Erika Zink, Kristin Burnum-Johnson, Scott Baker, Blake A. Simmons, Jeffrey M. Skerker, John M. Gladden, Jon Magnuson

    Published 2021
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  9. 9
    Genome-scale and pathway engineering for the sustainable aviation fuel precursor isoprenol production in Pseudomonas putida

    Genome-scale and pathway engineering for the sustainable aviation fuel precursor isoprenol production in Pseudomonas putida by Deepanwita Banerjee, Ian Sofian Yunus, Xi Wang, Jinho Kim, Aparajitha Srinivasan, Russel Menchavez, Yan Chen, Jennifer Gin, Christopher J. Petzold, Héctor García Martín, Jon Magnuson, Paul D. Adams, Blake A. Simmons, Aindrila Mukhopadhyay, Joonhoon Kim, Taek Soon Lee

    Published 2024
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  10. 10
    Production of ent-kaurene from lignocellulosic hydrolysate in Rhodosporidium toruloides

    Production of ent-kaurene from lignocellulosic hydrolysate in Rhodosporidium toruloides by Gina M. Geiselman, Xun Zhuang, James Kirby, Mary Bao Tran-Gyamfi, Jan‐Philip Prahl, Eric Sundström, Yuqian Gao, Nathalie Munoz Munoz, Carrie Nicora, Derek M. Clay, Gabriella Papa, Kristin Burnum-Johnson, Jon Magnuson, Deepti Tanjore, Jeffrey M. Skerker, John M. Gladden

    Published 2020
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  11. 11
    Muconic acid production from glucose and xylose in Pseudomonas putida via evolution and metabolic engineering

    Muconic acid production from glucose and xylose in Pseudomonas putida via evolution and metabolic engineering by Ling Chen, George Peabody, Davinia Salvachúa, Young‐Mo Kim, Colin M. Kneucker, Christopher H. Calvey, Michela A. Monninger, Nathalie Munoz Munoz, Brenton Poirier, Kelsey J. Ramirez, Peter C. St. John, Sean P. Woodworth, Jon Magnuson, Kristin Burnum-Johnson, Adam M. Guss, Christopher W. Johnson, Gregg T. Beckham

    Published 2022
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  12. 12
    Engineering Rhodosporidium toruloides for production of 3-hydroxypropionic acid from lignocellulosic hydrolysate

    Engineering Rhodosporidium toruloides for production of 3-hydroxypropionic acid from lignocellulosic hydrolysate by Di Liu, Hee Jin Hwang, Peter B. Otoupal, Gina M. Geiselman, Joonhoon Kim, Kyle Pomraning, Young‐Mo Kim, Nathalie Munoz Munoz, Carrie Nicora, Yuqian Gao, Kristin Burnum-Johnson, Oslo Jacobson, Samuel T. Coradetti, Jinho Kim, Shuang Deng, Ziyu Dai, Jan‐Philip Prahl, Deepti Tanjore, Taek Soon Lee, Jon Magnuson, John M. Gladden

    Published 2023
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  13. 13
    Further engineering of R. toruloides for the production of terpenes from lignocellulosic biomass

    Further engineering of R. toruloides for the production of terpenes from lignocellulosic biomass by James Kirby, Gina M. Geiselman, Junko Yaegashi, Joonhoon Kim, Xun Zhuang, Mary Bao Tran-Gyamfi, Jan‐Philip Prahl, Eric Sundström, Yuqian Gao, Nathalie Munoz Munoz, Kristin Burnum-Johnson, Veronica T. Benites, Edward E. K. Baidoo, Anna Fuhrmann, Katharina Seibel, Bobbie‐Jo Webb‐Robertson, Jeremy Zucker, Carrie Nicora, Deepti Tanjore, Jon Magnuson, Jeffrey M. Skerker, John M. Gladden

    Published 2021
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  14. 14
    Linking secondary metabolites to gene clusters through genome sequencing of six diverse <i>Aspergillus</i> species

    Linking secondary metabolites to gene clusters through genome sequencing of six diverse <i>Aspergillus</i> species by Inge Kjærbølling, Tammi Vesth, Jens C. Frisvad, Jane Lind Nybo Rasmussen, Sebastian Theobald, Alan Kuo, Paul Bowyer, Yudai Matsuda, Stephen J. Mondo, Ellen Kirstine Lyhne, Martin E. Kogle, Alicia Clum, Anna Lipzen, Asaf Salamov, Chew Yee Ngan, Chris Daum, Jennifer Chiniquy, Kerrie Barry, Kurt LaButti, Sajeet Haridas, Blake A. Simmons, Jon Magnuson, Uffe Hasbro Mortensen, Thomas O. Larsen, Igor V. Grigoriev, Scott Baker, Mikael Rørdam Andersen

    Published 2018
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  15. 15
    PeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements

    PeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements by Aivett Bilbao, Nathalie Munoz Munoz, Joonhoon Kim, Danny Orton, Yuqian Gao, Kunal Poorey, Kyle Pomraning, Karl Weitz, Meagan Burnet, Carrie Nicora, Rosemarie Wilton, Shuang Deng, Ziyu Dai, Ethan Oksen, Aaron Gee, Rick A. Fasani, Anya Tsalenko, Deepti Tanjore, James E. Gardner, Richard Smith, Joshua K. Michener, John M. Gladden, Erin Baker, Christopher J. Petzold, Young‐Mo Kim, Alex Apffel, Jon Magnuson, Kristin Burnum-Johnson

    Published 2023
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  16. 16
    Initiation of fatty acid biosynthesis in Pseudomonas putida KT2440

    Initiation of fatty acid biosynthesis in Pseudomonas putida KT2440 by Kevin J. McNaught, Eugene Kuatsjah, Michael Zahn, Érica T. Prates, Huiling Shao, Gayle J. Bentley, Andrew R. Pickford, Josephine N. Gruber, Kelley V. Hestmark, Daniel Jacobson, Brenton Poirier, Ling Chen, Myrsini San Marchi, William E. Michener, Carrie Nicora, Jacob N. Sanders, Caralyn J. Szostkiewicz, Dušan Veličković, Mowei Zhou, Nathalie Munoz Munoz, Young‐Mo Kim, Jon Magnuson, Kristin Burnum-Johnson, K.N. Houk, J.E. McGeehan, Christopher W. Johnson, Gregg T. Beckham

    Published 2023
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  17. 17
    Genome sequence of the model mushroom Schizophyllum commune

    Genome sequence of the model mushroom Schizophyllum commune by Robin A. Ohm, Jan F. de Jong, Luis G. Lugones, Andrea Aerts, Erika Kothe, Jason Stajich, Ronald P. de Vries, Éric Record, Anthony Levasseur, Scott Baker, Kirk A. Bartholomew, Pedro M. Coutinho, Susann Erdmann, Thomas J. Fowler, Allen C. Gathman, Vincent Lombard, Bernard Henrissat, Nicole Knabe, Ursula Kües, Walt W. Lilly, Erika Lindquist, Susan Lucas, Jon Magnuson, François Piumi, Marjatta Raudaskoski, Asaf Salamov, Jeremy Schmutz, Francis W. M. R. Schwarze, Patricia vanKuyk, J. Stephen Horton, Igor V. Grigoriev, Han A. B. Wösten

    Published 2010
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  18. 18
    Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri

    Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri by Tammi Vesth, Jane Lind Nybo Rasmussen, Sebastian Theobald, Jens C. Frisvad, Thomas O. Larsen, Kristian Fog Nielsen, Jakob Blæsbjerg Hoof, Julian Brandl, Asaf Salamov, Robert Riley, John Gladden, Pallavi A. Phatale, Morten T. Nielsen, Ellen Kirstine Lyhne, Martin E. Kogle, Kimchi Strasser, Erin McDonnell, Kerrie Barry, Alicia Clum, Cindy Chen, Kurt LaButti, Sajeet Haridas, Matt Nolan, Laura Sandor, Alan Kuo, Anna Lipzen, Matthieu Hainaut, Élodie Drula, Adrian Tsang, Jon Magnuson, Bernard Henrissat, Ad Wiebenga, Blake A. Simmons, Miia Mäkelä, Ronald P. de Vries, Igor V. Grigoriev, Uffe Hasbro Mortensen, Scott Baker, Mikael Rørdam Andersen

    Published 2018
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  19. 19
    101 Dothideomycetes genomes: A test case for predicting lifestyles and emergence of pathogens

    101 Dothideomycetes genomes: A test case for predicting lifestyles and emergence of pathogens by Sajeet Haridas, R. Albert, M. Binder, J. Bloem, Kurt LaButti, Asaf Salamov, B. Andreopoulos, Scott Baker, Kerrie Barry, Gerald F. Bills, Burton H. Bluhm, C. Cannon, Raúl Castanera, Deborah Culley, Chris Daum, D. Ezra, Jennifer B González, Bernard Henrissat, Alan Kuo, Chen Liang, Anna Lipzen, François Lutzoni, Jon Magnuson, Stephen J. Mondo, Matt Nolan, Robin A. Ohm, Jasmyn Pangilinan, H.-J. Park, Lucı́a Ramı́rez, Manuel Alfaro, Hui Sun, Andrew Tritt, Yuko Yoshinaga, L.H. Zwiers, B. Gillian Turgeon, Stephen B. Goodwin, Joseph W. Spatafora, P.W. Crous, Igor V. Grigoriev

    Published 2020
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  20. 20
    Comparative genomics of citric-acid-producing<i>Aspergillus niger</i>ATCC 1015 versus enzyme-producing CBS 513.88

    Comparative genomics of citric-acid-producing<i>Aspergillus niger</i>ATCC 1015 versus enzyme-producing CBS 513.88 by Mikael Rørdam Andersen, Margarita Salazar, Peter J. Schaap, Peter J. I. van de Vondervoort, David Culley, Jette Thykær, Jens C. Frisvad, Kristian Fog Nielsen, Richard Albang, Kaj Albermann, Randy M. Berka, Gerhard H. Braus, Susanna A. Braus‐Stromeyer, Luis M. Corrochano, Ziyu Dai, P.W.M. Van Dijck, Gerald Hofmann, Linda L. Lasure, Jon Magnuson, Hildegard Menke, Martin Meijer, Susan L. Meijer, Jakob Blæsbjerg Nielsen, Michael L. Nielsen, Albert J. J. van Ooyen, Herman J. Pel, Lars Poulsen, Robert A. Samson, Hein Stam, Adrian Tsang, J.M. van den Brink, Alex Atkins, Andrea Aerts, Harris Shapiro, Jasmyn Pangilinan, Asaf Salamov, Yigong Lou, Erika Lindquist, Susan Lucas, Jane Grimwood, Igor V. Grigoriev, Christian P. Kubicek, Diego Martínez, Noël N. M. E. van Peij, Johannes A. Roubos, Jens Nielsen, Scott Baker

    Published 2011
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