检索结果 - Jeffrey J. Gray

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  1. 1
    The RosettaDock server for local protein-protein docking

    The RosettaDock server for local protein-protein docking 由 Sergey Lyskov, Jeffrey J. Gray

    出版 2008
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  2. 2
    SnugDock: Paratope Structural Optimization during Antibody-Antigen Docking Compensates for Errors in Antibody Homology Models

    SnugDock: Paratope Structural Optimization during Antibody-Antigen Docking Compensates for Errors in Antibody Homology Models 由 Aroop Sircar, Jeffrey J. Gray

    出版 2010
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  3. 3
    Conformer Selection and Induced Fit in Flexible Backbone Protein–Protein Docking Using Computational and NMR Ensembles

    Conformer Selection and Induced Fit in Flexible Backbone Protein–Protein Docking Using Computational and NMR Ensembles 由 Sidhartha Chaudhury, Jeffrey J. Gray

    出版 2008
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  4. 4
    Shape complementarity and hydrogen bond preferences in protein–protein interfaces: implications for antibody modeling and protein–protein docking

    Shape complementarity and hydrogen bond preferences in protein–protein interfaces: implications for antibody modeling and protein–protein docking 由 Daisuke Kuroda, Jeffrey J. Gray

    出版 2016
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  5. 5
    Pushing the Backbone in Protein-Protein Docking

    Pushing the Backbone in Protein-Protein Docking 由 Daisuke Kuroda, Jeffrey J. Gray

    出版 2016
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  6. 6
    Advances to tackle backbone flexibility in protein docking

    Advances to tackle backbone flexibility in protein docking 由 Ameya Harmalkar, Jeffrey J. Gray

    出版 2020
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  7. 7
    AI models for protein design are driving antibody engineering

    AI models for protein design are driving antibody engineering 由 Michael Chungyoun, Jeffrey J. Gray

    出版 2023
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  8. 8
    Allosteric Communication Occurs via Networks of Tertiary and Quaternary Motions in Proteins

    Allosteric Communication Occurs via Networks of Tertiary and Quaternary Motions in Proteins 由 Michael D. Daily, Jeffrey J. Gray

    出版 2009
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  9. 9
    Rapid Calculation of Protein pKa Values Using Rosetta

    Rapid Calculation of Protein pKa Values Using Rosetta 由 Krishna Praneeth Kilambi, Jeffrey J. Gray

    出版 2012
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  10. 10
    Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

    Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies 由 Jeffrey A. Ruffolo, Jeffrey J. Gray

    出版 2022
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  11. 11
    What has AlphaFold3 learned about antibody and nanobody docking, and what remains unsolved?

    What has AlphaFold3 learned about antibody and nanobody docking, and what remains unsolved? 由 Fatima N. Hitawala, Jeffrey J. Gray

    出版 2024
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  12. 12
    PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta

    PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta 由 Sidhartha Chaudhury, Sergey Lyskov, Jeffrey J. Gray

    出版 2010
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  13. 13
    Improved prediction of antibody V<sub>L</sub>–V<sub>H</sub>orientation

    Improved prediction of antibody V<sub>L</sub>–V<sub>H</sub>orientation 由 Nicholas Marze, Sergey Lyskov, Jeffrey J. Gray

    出版 2016
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  14. 14
    Reliable protein-protein docking with AlphaFold, Rosetta, and replica-exchange

    Reliable protein-protein docking with AlphaFold, Rosetta, and replica-exchange 由 Ameya Harmalkar, Sergey Lyskov, Jeffrey J. Gray

    出版 2024
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  15. 15
    Reliable protein-protein docking with AlphaFold, Rosetta, and replica-exchange

    Reliable protein-protein docking with AlphaFold, Rosetta, and replica-exchange 由 Ameya Harmalkar, Sergey Lyskov, Jeffrey J. Gray

    出版 2025
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  16. 16
    RosettaAntibody: antibody variable region homology modeling server

    RosettaAntibody: antibody variable region homology modeling server 由 Amit Sircar, Eui Tae Kim, Jeffrey J. Gray

    出版 2009
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  17. 17
    Deciphering antibody affinity maturation with language models and weakly supervised learning

    Deciphering antibody affinity maturation with language models and weakly supervised learning 由 Jeffrey A. Ruffolo, Jeffrey J. Gray, Jeremias Sulam

    出版 2021
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  18. 18
    Antibody structure prediction using interpretable deep learning

    Antibody structure prediction using interpretable deep learning 由 Jeffrey A. Ruffolo, Jeremias Sulam, Jeffrey J. Gray

    出版 2021
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  19. 19
    FLAb: Benchmarking deep learning methods for antibody fitness prediction

    FLAb: Benchmarking deep learning methods for antibody fitness prediction 由 Michael Chungyoun, Jeffrey A. Ruffolo, Jeffrey J. Gray

    出版 2024
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  20. 20
    The Origin of CDR H3 Structural Diversity

    The Origin of CDR H3 Structural Diversity 由 Brian D. Weitzner, Roland L. Dunbrack, Jeffrey J. Gray

    出版 2015
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