Ngā hua rapu kaituhi

1

The RosettaDock server for local protein-protein docking mā Sergey Lyskov, Jeffrey J. Gray

I whakaputaina 2008

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
Artigo

Tiaki ki tētahi rārangi

I tiakina i:
2

SnugDock: Paratope Structural Optimization during Antibody-Antigen Docking Compensates for Errors in Antibody Homology Models mā Aroop Sircar, Jeffrey J. Gray

I whakaputaina 2010

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
Artigo

Tiaki ki tētahi rārangi

I tiakina i:
3

Conformer Selection and Induced Fit in Flexible Backbone Protein–Protein Docking Using Computational and NMR Ensembles mā Sidhartha Chaudhury, Jeffrey J. Gray

I whakaputaina 2008

Whiwhi kuputuhi katoa
Artigo

Tiaki ki tētahi rārangi

I tiakina i:
4

Shape complementarity and hydrogen bond preferences in protein–protein interfaces: implications for antibody modeling and protein–protein docking mā Daisuke Kuroda, Jeffrey J. Gray

I whakaputaina 2016

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
Artigo

Tiaki ki tētahi rārangi

I tiakina i:
5

Pushing the Backbone in Protein-Protein Docking mā Daisuke Kuroda, Jeffrey J. Gray

I whakaputaina 2016

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
Artigo

Tiaki ki tētahi rārangi

I tiakina i:
6

Advances to tackle backbone flexibility in protein docking mā Ameya Harmalkar, Jeffrey J. Gray

I whakaputaina 2020

Whiwhi kuputuhi katoa
Revisão

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7

AI models for protein design are driving antibody engineering mā Michael Chungyoun, Jeffrey J. Gray

I whakaputaina 2023

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
Revisão

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I tiakina i:
8

Allosteric Communication Occurs via Networks of Tertiary and Quaternary Motions in Proteins mā Michael D. Daily, Jeffrey J. Gray

I whakaputaina 2009

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
Artigo

Tiaki ki tētahi rārangi

I tiakina i:
9

Rapid Calculation of Protein pKa Values Using Rosetta mā Krishna Praneeth Kilambi, Jeffrey J. Gray

I whakaputaina 2012

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
Artigo

Tiaki ki tētahi rārangi

I tiakina i:
10

Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies mā Jeffrey A. Ruffolo, Jeffrey J. Gray

I whakaputaina 2022

Whiwhi kuputuhi katoa
Artigo

Tiaki ki tētahi rārangi

I tiakina i:
11

What has AlphaFold3 learned about antibody and nanobody docking, and what remains unsolved? mā Fatima N. Hitawala, Jeffrey J. Gray

I whakaputaina 2024

Whiwhi kuputuhi katoa
Pré-impressão

Tiaki ki tētahi rārangi

I tiakina i:
12

PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta mā Sidhartha Chaudhury, Sergey Lyskov, Jeffrey J. Gray

I whakaputaina 2010

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
Artigo

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I tiakina i:
13

Improved prediction of antibody V<sub>L</sub>–V<sub>H</sub>orientation mā Nicholas Marze, Sergey Lyskov, Jeffrey J. Gray

I whakaputaina 2016

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
Artigo

Tiaki ki tētahi rārangi

I tiakina i:
14

Reliable protein-protein docking with AlphaFold, Rosetta, and replica-exchange mā Ameya Harmalkar, Sergey Lyskov, Jeffrey J. Gray

I whakaputaina 2024

Whiwhi kuputuhi katoa
Pré-impressão

Tiaki ki tētahi rārangi

I tiakina i:
15

Reliable protein-protein docking with AlphaFold, Rosetta, and replica-exchange mā Ameya Harmalkar, Sergey Lyskov, Jeffrey J. Gray

I whakaputaina 2025

Whiwhi kuputuhi katoa
Pré-impressão

Tiaki ki tētahi rārangi

I tiakina i:
16

RosettaAntibody: antibody variable region homology modeling server mā Amit Sircar, Eui Tae Kim, Jeffrey J. Gray

I whakaputaina 2009

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
Artigo

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I tiakina i:
17

Deciphering antibody affinity maturation with language models and weakly supervised learning mā Jeffrey A. Ruffolo, Jeffrey J. Gray, Jeremias Sulam

I whakaputaina 2021

Whiwhi kuputuhi katoa
Pré-impressão

Tiaki ki tētahi rārangi

I tiakina i:
18

Antibody structure prediction using interpretable deep learning mā Jeffrey A. Ruffolo, Jeremias Sulam, Jeffrey J. Gray

I whakaputaina 2021

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
Artigo

Tiaki ki tētahi rārangi

I tiakina i:
19

FLAb: Benchmarking deep learning methods for antibody fitness prediction mā Michael Chungyoun, Jeffrey A. Ruffolo, Jeffrey J. Gray

I whakaputaina 2024

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
Pré-impressão

Tiaki ki tētahi rārangi

I tiakina i:
20

The Origin of CDR H3 Structural Diversity mā Brian D. Weitzner, Roland L. Dunbrack, Jeffrey J. Gray

I whakaputaina 2015

Whiwhi kuputuhi katoa Whiwhi kuputuhi katoa
Artigo

Tiaki ki tētahi rārangi

I tiakina i:

Ngā hua rapu - Jeffrey J. Gray

The RosettaDock server for local protein-protein docking mā Sergey Lyskov, Jeffrey J. Gray

SnugDock: Paratope Structural Optimization during Antibody-Antigen Docking Compensates for Errors in Antibody Homology Models mā Aroop Sircar, Jeffrey J. Gray

Conformer Selection and Induced Fit in Flexible Backbone Protein–Protein Docking Using Computational and NMR Ensembles mā Sidhartha Chaudhury, Jeffrey J. Gray

Shape complementarity and hydrogen bond preferences in protein–protein interfaces: implications for antibody modeling and protein–protein docking mā Daisuke Kuroda, Jeffrey J. Gray

Pushing the Backbone in Protein-Protein Docking mā Daisuke Kuroda, Jeffrey J. Gray

Advances to tackle backbone flexibility in protein docking mā Ameya Harmalkar, Jeffrey J. Gray

AI models for protein design are driving antibody engineering mā Michael Chungyoun, Jeffrey J. Gray

Allosteric Communication Occurs via Networks of Tertiary and Quaternary Motions in Proteins mā Michael D. Daily, Jeffrey J. Gray

Rapid Calculation of Protein pKa Values Using Rosetta mā Krishna Praneeth Kilambi, Jeffrey J. Gray

Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies mā Jeffrey A. Ruffolo, Jeffrey J. Gray

What has AlphaFold3 learned about antibody and nanobody docking, and what remains unsolved? mā Fatima N. Hitawala, Jeffrey J. Gray

PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta mā Sidhartha Chaudhury, Sergey Lyskov, Jeffrey J. Gray

Improved prediction of antibody V<sub>L</sub>–V<sub>H</sub>orientation mā Nicholas Marze, Sergey Lyskov, Jeffrey J. Gray

Reliable protein-protein docking with AlphaFold, Rosetta, and replica-exchange mā Ameya Harmalkar, Sergey Lyskov, Jeffrey J. Gray

Reliable protein-protein docking with AlphaFold, Rosetta, and replica-exchange mā Ameya Harmalkar, Sergey Lyskov, Jeffrey J. Gray

RosettaAntibody: antibody variable region homology modeling server mā Amit Sircar, Eui Tae Kim, Jeffrey J. Gray

Deciphering antibody affinity maturation with language models and weakly supervised learning mā Jeffrey A. Ruffolo, Jeffrey J. Gray, Jeremias Sulam

Antibody structure prediction using interpretable deep learning mā Jeffrey A. Ruffolo, Jeremias Sulam, Jeffrey J. Gray

FLAb: Benchmarking deep learning methods for antibody fitness prediction mā Michael Chungyoun, Jeffrey A. Ruffolo, Jeffrey J. Gray

The Origin of CDR H3 Structural Diversity mā Brian D. Weitzner, Roland L. Dunbrack, Jeffrey J. Gray

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