Torthaí cuardaigh - Jeffrey J. Gray

Beachtaigh na torthaí
  1. 1
    The RosettaDock server for local protein-protein docking

    The RosettaDock server for local protein-protein docking de réir Sergey Lyskov, Jeffrey J. Gray

    Foilsithe / Cruthaithe 2008
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  2. 2
    SnugDock: Paratope Structural Optimization during Antibody-Antigen Docking Compensates for Errors in Antibody Homology Models

    SnugDock: Paratope Structural Optimization during Antibody-Antigen Docking Compensates for Errors in Antibody Homology Models de réir Aroop Sircar, Jeffrey J. Gray

    Foilsithe / Cruthaithe 2010
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  3. 3
    Conformer Selection and Induced Fit in Flexible Backbone Protein–Protein Docking Using Computational and NMR Ensembles

    Conformer Selection and Induced Fit in Flexible Backbone Protein–Protein Docking Using Computational and NMR Ensembles de réir Sidhartha Chaudhury, Jeffrey J. Gray

    Foilsithe / Cruthaithe 2008
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  4. 4
    Shape complementarity and hydrogen bond preferences in protein–protein interfaces: implications for antibody modeling and protein–protein docking

    Shape complementarity and hydrogen bond preferences in protein–protein interfaces: implications for antibody modeling and protein–protein docking de réir Daisuke Kuroda, Jeffrey J. Gray

    Foilsithe / Cruthaithe 2016
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  5. 5
    Pushing the Backbone in Protein-Protein Docking

    Pushing the Backbone in Protein-Protein Docking de réir Daisuke Kuroda, Jeffrey J. Gray

    Foilsithe / Cruthaithe 2016
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  6. 6
    Advances to tackle backbone flexibility in protein docking

    Advances to tackle backbone flexibility in protein docking de réir Ameya Harmalkar, Jeffrey J. Gray

    Foilsithe / Cruthaithe 2020
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  7. 7
    AI models for protein design are driving antibody engineering

    AI models for protein design are driving antibody engineering de réir Michael Chungyoun, Jeffrey J. Gray

    Foilsithe / Cruthaithe 2023
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  8. 8
    Allosteric Communication Occurs via Networks of Tertiary and Quaternary Motions in Proteins

    Allosteric Communication Occurs via Networks of Tertiary and Quaternary Motions in Proteins de réir Michael D. Daily, Jeffrey J. Gray

    Foilsithe / Cruthaithe 2009
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  9. 9
    Rapid Calculation of Protein pKa Values Using Rosetta

    Rapid Calculation of Protein pKa Values Using Rosetta de réir Krishna Praneeth Kilambi, Jeffrey J. Gray

    Foilsithe / Cruthaithe 2012
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  10. 10
    Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

    Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies de réir Jeffrey A. Ruffolo, Jeffrey J. Gray

    Foilsithe / Cruthaithe 2022
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  11. 11
    What has AlphaFold3 learned about antibody and nanobody docking, and what remains unsolved?

    What has AlphaFold3 learned about antibody and nanobody docking, and what remains unsolved? de réir Fatima N. Hitawala, Jeffrey J. Gray

    Foilsithe / Cruthaithe 2024
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  12. 12
    PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta

    PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta de réir Sidhartha Chaudhury, Sergey Lyskov, Jeffrey J. Gray

    Foilsithe / Cruthaithe 2010
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  13. 13
    Improved prediction of antibody V<sub>L</sub>–V<sub>H</sub>orientation

    Improved prediction of antibody V<sub>L</sub>–V<sub>H</sub>orientation de réir Nicholas Marze, Sergey Lyskov, Jeffrey J. Gray

    Foilsithe / Cruthaithe 2016
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  14. 14
    Reliable protein-protein docking with AlphaFold, Rosetta, and replica-exchange

    Reliable protein-protein docking with AlphaFold, Rosetta, and replica-exchange de réir Ameya Harmalkar, Sergey Lyskov, Jeffrey J. Gray

    Foilsithe / Cruthaithe 2024
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  15. 15
    Reliable protein-protein docking with AlphaFold, Rosetta, and replica-exchange

    Reliable protein-protein docking with AlphaFold, Rosetta, and replica-exchange de réir Ameya Harmalkar, Sergey Lyskov, Jeffrey J. Gray

    Foilsithe / Cruthaithe 2025
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  16. 16
    RosettaAntibody: antibody variable region homology modeling server

    RosettaAntibody: antibody variable region homology modeling server de réir Amit Sircar, Eui Tae Kim, Jeffrey J. Gray

    Foilsithe / Cruthaithe 2009
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  17. 17
    Deciphering antibody affinity maturation with language models and weakly supervised learning

    Deciphering antibody affinity maturation with language models and weakly supervised learning de réir Jeffrey A. Ruffolo, Jeffrey J. Gray, Jeremias Sulam

    Foilsithe / Cruthaithe 2021
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  18. 18
    Antibody structure prediction using interpretable deep learning

    Antibody structure prediction using interpretable deep learning de réir Jeffrey A. Ruffolo, Jeremias Sulam, Jeffrey J. Gray

    Foilsithe / Cruthaithe 2021
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  19. 19
    FLAb: Benchmarking deep learning methods for antibody fitness prediction

    FLAb: Benchmarking deep learning methods for antibody fitness prediction de réir Michael Chungyoun, Jeffrey A. Ruffolo, Jeffrey J. Gray

    Foilsithe / Cruthaithe 2024
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  20. 20
    The Origin of CDR H3 Structural Diversity

    The Origin of CDR H3 Structural Diversity de réir Brian D. Weitzner, Roland L. Dunbrack, Jeffrey J. Gray

    Foilsithe / Cruthaithe 2015
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