Søgeresultater - Jeffrey J. Gray

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  1. 1
    The RosettaDock server for local protein-protein docking

    The RosettaDock server for local protein-protein docking af Sergey Lyskov, Jeffrey J. Gray

    Udgivet 2008
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  2. 2
    SnugDock: Paratope Structural Optimization during Antibody-Antigen Docking Compensates for Errors in Antibody Homology Models

    SnugDock: Paratope Structural Optimization during Antibody-Antigen Docking Compensates for Errors in Antibody Homology Models af Aroop Sircar, Jeffrey J. Gray

    Udgivet 2010
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  3. 3
    Conformer Selection and Induced Fit in Flexible Backbone Protein–Protein Docking Using Computational and NMR Ensembles

    Conformer Selection and Induced Fit in Flexible Backbone Protein–Protein Docking Using Computational and NMR Ensembles af Sidhartha Chaudhury, Jeffrey J. Gray

    Udgivet 2008
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  4. 4
    Shape complementarity and hydrogen bond preferences in protein–protein interfaces: implications for antibody modeling and protein–protein docking

    Shape complementarity and hydrogen bond preferences in protein–protein interfaces: implications for antibody modeling and protein–protein docking af Daisuke Kuroda, Jeffrey J. Gray

    Udgivet 2016
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  5. 5
    Pushing the Backbone in Protein-Protein Docking

    Pushing the Backbone in Protein-Protein Docking af Daisuke Kuroda, Jeffrey J. Gray

    Udgivet 2016
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  6. 6
    Advances to tackle backbone flexibility in protein docking

    Advances to tackle backbone flexibility in protein docking af Ameya Harmalkar, Jeffrey J. Gray

    Udgivet 2020
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  7. 7
    AI models for protein design are driving antibody engineering

    AI models for protein design are driving antibody engineering af Michael Chungyoun, Jeffrey J. Gray

    Udgivet 2023
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  8. 8
    Allosteric Communication Occurs via Networks of Tertiary and Quaternary Motions in Proteins

    Allosteric Communication Occurs via Networks of Tertiary and Quaternary Motions in Proteins af Michael D. Daily, Jeffrey J. Gray

    Udgivet 2009
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  9. 9
    Rapid Calculation of Protein pKa Values Using Rosetta

    Rapid Calculation of Protein pKa Values Using Rosetta af Krishna Praneeth Kilambi, Jeffrey J. Gray

    Udgivet 2012
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  10. 10
    Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

    Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies af Jeffrey A. Ruffolo, Jeffrey J. Gray

    Udgivet 2022
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  11. 11
    What has AlphaFold3 learned about antibody and nanobody docking, and what remains unsolved?

    What has AlphaFold3 learned about antibody and nanobody docking, and what remains unsolved? af Fatima N. Hitawala, Jeffrey J. Gray

    Udgivet 2024
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  12. 12
    PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta

    PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta af Sidhartha Chaudhury, Sergey Lyskov, Jeffrey J. Gray

    Udgivet 2010
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  13. 13
    Improved prediction of antibody V<sub>L</sub>–V<sub>H</sub>orientation

    Improved prediction of antibody V<sub>L</sub>–V<sub>H</sub>orientation af Nicholas Marze, Sergey Lyskov, Jeffrey J. Gray

    Udgivet 2016
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  14. 14
    Reliable protein-protein docking with AlphaFold, Rosetta, and replica-exchange

    Reliable protein-protein docking with AlphaFold, Rosetta, and replica-exchange af Ameya Harmalkar, Sergey Lyskov, Jeffrey J. Gray

    Udgivet 2024
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  15. 15
    Reliable protein-protein docking with AlphaFold, Rosetta, and replica-exchange

    Reliable protein-protein docking with AlphaFold, Rosetta, and replica-exchange af Ameya Harmalkar, Sergey Lyskov, Jeffrey J. Gray

    Udgivet 2025
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  16. 16
    RosettaAntibody: antibody variable region homology modeling server

    RosettaAntibody: antibody variable region homology modeling server af Amit Sircar, Eui Tae Kim, Jeffrey J. Gray

    Udgivet 2009
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  17. 17
    Deciphering antibody affinity maturation with language models and weakly supervised learning

    Deciphering antibody affinity maturation with language models and weakly supervised learning af Jeffrey A. Ruffolo, Jeffrey J. Gray, Jeremias Sulam

    Udgivet 2021
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  18. 18
    Antibody structure prediction using interpretable deep learning

    Antibody structure prediction using interpretable deep learning af Jeffrey A. Ruffolo, Jeremias Sulam, Jeffrey J. Gray

    Udgivet 2021
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  19. 19
    FLAb: Benchmarking deep learning methods for antibody fitness prediction

    FLAb: Benchmarking deep learning methods for antibody fitness prediction af Michael Chungyoun, Jeffrey A. Ruffolo, Jeffrey J. Gray

    Udgivet 2024
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  20. 20
    The Origin of CDR H3 Structural Diversity

    The Origin of CDR H3 Structural Diversity af Brian D. Weitzner, Roland L. Dunbrack, Jeffrey J. Gray

    Udgivet 2015
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