Canlyniadau Chwilio - Jean Monlong

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  1. 1
    Identification of genetic variants associated with alternative splicing using sQTLseekeR

    Identification of genetic variants associated with alternative splicing using sQTLseekeR gan Jean Monlong, Miquel Calvo, Pedro G. Ferreira, Roderic Guigó

    Cyhoeddwyd 2014
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  2. 2
    Overdiagnosis from non-progressive cancer detected by screening mammography: stochastic simulation study with calibration to population based registry data

    Overdiagnosis from non-progressive cancer detected by screening mammography: stochastic simulation study with calibration to population based registry data gan Arnaud Seigneurin, Olivier François, José Labarère, Pierre Oudeville, Jean Monlong, M Colonna

    Cyhoeddwyd 2011
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  3. 3
    Human copy number variants are enriched in regions of low mappability

    Human copy number variants are enriched in regions of low mappability gan Jean Monlong, Patrick Cossette, Caroline Meloche, Guy A. Rouleau, Simon Girard, Guillaume Bourque

    Cyhoeddwyd 2018
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  4. 4
    Pangenome Graph Construction from Genome Alignment with Minigraph-Cactus

    Pangenome Graph Construction from Genome Alignment with Minigraph-Cactus gan Glenn Hickey, Jean Monlong, Jana Ebler, Adam M. Novak, Jordan M. Eizenga, Yan Gao, Tobias Marschall, Heng Li, Benedict Paten

    Cyhoeddwyd 2022
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  5. 5
    Genotyping structural variants in pangenome graphs using the vg toolkit

    Genotyping structural variants in pangenome graphs using the vg toolkit gan Glenn Hickey, David N. Heller, Jean Monlong, Jonas A. Sibbesen, Jouni Sirén, Jordan M. Eizenga, Eric T. Dawson, Erik Garrison, Adam M. Novak, Benedict Paten

    Cyhoeddwyd 2020
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  6. 6
    Genome-wide microhomologies enable precise template-free editing of biologically relevant deletion mutations

    Genome-wide microhomologies enable precise template-free editing of biologically relevant deletion mutations gan Janin Grajcarek, Jean Monlong, Yoko Nishinaka‐Arai, Michiko Nakamura, Miki Nagai, Shiori Matsuo, David R. Lougheed, Hidetoshi Sakurai, Megumu K. Saito, Guillaume Bourque, Knut Woltjen

    Cyhoeddwyd 2019
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  7. 7
    Beyond the Human Genome Project: The Age of Complete Human Genome Sequences and Pangenome References

    Beyond the Human Genome Project: The Age of Complete Human Genome Sequences and Pangenome References gan Dylan J. Taylor, Jordan M. Eizenga, Qiuhui Li, Arun Das, Katharine M. Jenike, Eimear E. Kenny, Karen H. Miga, Jean Monlong, Rajiv C. McCoy, Benedict Paten, Michael C. Schatz

    Cyhoeddwyd 2024
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  8. 8
    Global characterization of copy number variants in epilepsy patients from whole genome sequencing

    Global characterization of copy number variants in epilepsy patients from whole genome sequencing gan Jean Monlong, Simon Girard, Caroline Meloche, Maxime Cadieux‐Dion, Danielle M. Andrade, Ron G. Lafrenière, Micheline Gravel, Dan Spiegelman, Alexandre Dionne‐Laporte, Cyrus Boelman, Fadi F. Hamdan, Jacques L. Michaud, Guy A. Rouleau, Berge A. Minassian, Guillaume Bourque, Patrick Cossette

    Cyhoeddwyd 2018
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  9. 9
    Glioblastoma scRNA-seq shows treatment-induced, immune-dependent increase in mesenchymal cancer cells and structural variants in distal neural stem cells

    Glioblastoma scRNA-seq shows treatment-induced, immune-dependent increase in mesenchymal cancer cells and structural variants in distal neural stem cells gan Charles P. Couturier, Javad Nadaf, Zhaorong Li, Salma Baig, Gabriele Riva, Phuong Uyen Le, Daan J. Kloosterman, Jean Monlong, Andriniaina Nkili Meyong, Redouane Allache, Theresa Degenhard, Mariam Al-Rashid, Marie‐Christine Guiot, Guillaume Bourque, Jiannis Ragoussis, Leila Akkari, Francisco J. Quintana, Kevin Petrecca

    Cyhoeddwyd 2022
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  10. 10
    Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression

    Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression gan Dmitri D. Pervouchine, Sarah Djebali, Alessandra Breschi, Carrie Davis, Pablo Prieto, Alexander Dobin, Andrea Tanzer, Julien Lagarde, Chris Zaleski, Lei Hoon See, Meagan Fastuca, Jörg Drenkow, Huaien Wang, Giovanni Bussotti, Baikang Pei, Suganthi Balasubramanian, Jean Monlong, Arif Harmanci, Mark Gerstein, M Beer, Cédric Notredame, Roderic Guigó, T Gingeras

    Cyhoeddwyd 2015
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  11. 11
    Single-cell RNA-seq reveals that glioblastoma recapitulates a normal neurodevelopmental hierarchy

    Single-cell RNA-seq reveals that glioblastoma recapitulates a normal neurodevelopmental hierarchy gan Charles P. Couturier, Shamini Ayyadhury, Phuong Uyen Le, Javad Nadaf, Jean Monlong, Gabriele Riva, Redouane Allache, Salma Baig, Xiaohua Yan, Mathieu Bourgey, Changseok Lee, Yu Chang David Wang, V. Wee Yong, Marie‐Christine Guiot, Hamed S. Najafabadi, Bratislav Mišić, Jack P. Antel, Guillaume Bourque, Jiannis Ragoussis, Kevin Petrecca

    Cyhoeddwyd 2020
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  12. 12
    Pangenomics enables genotyping of known structural variants in 5202 diverse genomes

    Pangenomics enables genotyping of known structural variants in 5202 diverse genomes gan Jouni Sirén, Jean Monlong, Xian Chang, Adam M. Novak, Jordan M. Eizenga, Charles Markello, Jonas A. Sibbesen, Glenn Hickey, Pi-Chuan Chang, Andrew Carroll, Namrata Gupta, Stacey Gabriel, Thomas W. Blackwell, Aakrosh Ratan, Kent D. Taylor, Stephen S. Rich, Jerome I. Rotter, David Haussler, Erik Garrison, Benedict Paten

    Cyhoeddwyd 2021
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  13. 13
    The human transcriptome across tissues and individuals

    The human transcriptome across tissues and individuals gan Marta Melé, Pedro G. Ferreira, Ferrán Reverter, David S. DeLuca, Jean Monlong, Michael Sammeth, Taylor Young, Jakob M. Goldmann, Dmitri D. Pervouchine, Timothy J. Sullivan, Rory Johnson, Ayellet V. Segrè, Sarah Djebali, Anastasia Niarchou, The GTEx Consortium, Fred A. Wright, Tuuli Lappalainen, Miquel Calvo, Gad Getz, Emmanouil T. Dermitzakis, Kristin Ardlie, Roderic Guigó

    Cyhoeddwyd 2015
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  14. 14
    Loss of chromosome Y leads to down regulation of KDM5D and KDM6C epigenetic modifiers in clear cell renal cell carcinoma

    Loss of chromosome Y leads to down regulation of KDM5D and KDM6C epigenetic modifiers in clear cell renal cell carcinoma gan Madeleine Arseneault, Jean Monlong, Naveen Vasudev, Ruhina Shirin Laskar, Maryam Safisamghabadi, Patricia Harnden, Lars Egevad, Nazanin Nourbehesht, Pudchalaluck Panichnantakul, Ivana Holcátová, A. Brisuda, Vladimí­r Janout, Helena Kollárová, Lenka Foretová, Marie Navrátilová, Dana Mateș, Viorel Jinga, Давид Заридзе, Anush Mukeria, Pouria Jandaghi, Paul Brennan, Alvis Brāzma, Jörg Tost, Ghislaine Scélo, Rosamonde E. Banks, Mark Lathrop, Guillaume Bourque, Yasser Riazalhosseini

    Cyhoeddwyd 2017
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  15. 15
    Phased nanopore assembly with Shasta and modular graph phasing with GFAse

    Phased nanopore assembly with Shasta and modular graph phasing with GFAse gan Ryan Lorig-Roach, Melissa Meredith, Jean Monlong, Miten Jain, Hugh E. Olsen, Brandy McNulty, David Porubský, Tessa G. Montague, Julian Lucas, Chris Condon, Jordan M. Eizenga, Sissel Juul, Sean K. McKenzie, Sara E. Simmonds, Jimin Park, Mobin Asri, Sergey Koren, Evan E. Eichler, Richard Axel, Bruce Martin, P. Carnevali, Karen H. Miga, Benedict Paten

    Cyhoeddwyd 2024
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  16. 16
    Evolution of chromosome-arm aberrations in breast cancer through genetic network rewiring

    Evolution of chromosome-arm aberrations in breast cancer through genetic network rewiring gan Elena Kuzmin, Toby M. Baker, Tom Lesluyes, Jean Monlong, Kento T. Abe, Paula P. Coelho, Michael Schwartz, Joseph Del Corpo, Dongmei Zou, Geneviève Morin, Alain Pacis, Yang Yang, Constanza Martínez, Jarrett J. Barber, Hellen Kuasne, Rui Li, Mathieu Bourgey, Anne-Marie Fortier, Peter Davison, Atilla Ömeroğlu, Marie‐Christine Guiot, Quaid Morris, Claudia L. Kleinman, Sidong Huang, Anne‐Claude Gingras, Jiannis Ragoussis, Guillaume Bourque, Peter Van Loo, Morag Park

    Cyhoeddwyd 2024
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  17. 17
    Accelerated identification of disease-causing variants with ultra-rapid nanopore genome sequencing

    Accelerated identification of disease-causing variants with ultra-rapid nanopore genome sequencing gan Sneha D. Goenka, John E. Gorzynski, Kishwar Shafin, Dianna G. Fisk, Trevor Pesout, Tanner Jensen, Jean Monlong, Pi-Chuan Chang, Gunjan Baid, Jonathan A. Bernstein, Jeffrey W. Christle, Karen Dalton, Daniel R. Garalde, Megan E. Grove, Joseph Guillory, Alexey Kolesnikov, Maria Nattestad, Maura Ruzhnikov, Mehrzad Samadi, Ankit Sethia, Elizabeth Spiteri, Christopher J. Wright, Katherine Xiong, Tong Zhu, Miten Jain, Fritz J. Sedlazeck, Andrew Carroll, Benedict Paten, Euan A. Ashley

    Cyhoeddwyd 2022
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  18. 18
    Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation

    Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation gan Mikhail Kolmogorov, Kimberley J. Billingsley, Mira Mastoras, Melissa Meredith, Jean Monlong, Ryan Lorig-Roach, Mobin Asri, Pilar Álvarez Jerez, Laksh Malik, Ramita Dewan, Xylena Reed, Rylee M. Genner, Kensuke Daida, Sairam Behera, Kishwar Shafin, Trevor Pesout, Jeshuwin Prabakaran, P. Carnevali, Jianzhi Yang, Arang Rhie, Sonja W. Scholz, Bryan J. Traynor, Karen H. Miga, Miten Jain, Winston Timp, Adam M. Phillippy, Mark Chaisson, Fritz J. Sedlazeck, Cornelis Blauwendraat, Benedict Paten

    Cyhoeddwyd 2023
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  19. 19
    Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation

    Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation gan Mikhail Kolmogorov, Kimberley J. Billingsley, Mira Mastoras, Melissa Meredith, Jean Monlong, Ryan Lorig-Roach, Mobin Asri, Pilar Álvarez Jerez, Laksh Malik, Ramita Dewan, Xylena Reed, Rylee M. Genner, Kensuke Daida, Sairam Behera, Kishwar Shafin, Trevor Pesout, Jeshuwin Prabakaran, P. Carnevali, Jianzhi Yang, Arang Rhie, Sonja W. Scholz, Bryan J. Traynor, Karen H. Miga, Miten Jain, Winston Timp, Adam M. Phillippy, Mark Chaisson, Fritz J. Sedlazeck, Cornelis Blauwendraat, Benedict Paten

    Cyhoeddwyd 2023
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  20. 20
    Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes

    Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes gan Kishwar Shafin, Trevor Pesout, Ryan Lorig-Roach, Marina Haukness, Hugh E. Olsen, Colleen M. Bosworth, Joel Armstrong, Kristof Tigyi, Nicholas Maurer, Sergey Koren, Fritz J. Sedlazeck, Tobias Marschall, Simon Mayes, Vânia Costa, Justin M. Zook, Kelvin J. Liu, Duncan Kilburn, Melanie Sorensen, Katherine M. Munson, Mitchell R. Vollger, Jean Monlong, Erik Garrison, Evan E. Eichler, Sofie R. Salama, David Haussler, Richard E. Green, Mark Akeson, Adam M. Phillippy, Karen H. Miga, P. Carnevali, Miten Jain, Benedict Paten

    Cyhoeddwyd 2020
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