Resultats de la cerca - Jean‐Pierre Kocher

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  1. 1
    Drug side effect extraction from clinical narratives of psychiatry and psychology patients

    Drug side effect extraction from clinical narratives of psychiatry and psychology patients per Sunghwan Sohn, Jean‐Pierre Kocher, Christopher G. Chute, Guergana Savova

    Publicat 2011
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  2. 2
    Base Resolution Methylome Profiling: Considerations in Platform Selection, Data Preprocessing and Analysis

    Base Resolution Methylome Profiling: Considerations in Platform Selection, Data Preprocessing and Analysis per Zhifu Sun, Julie M. Cunningham, Susan L. Slager, Jean‐Pierre Kocher

    Publicat 2015
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  3. 3
    Indel detection from RNA-seq data: tool evaluation and strategies for accurate detection of actionable mutations

    Indel detection from RNA-seq data: tool evaluation and strategies for accurate detection of actionable mutations per Zhifu Sun, Aditya Bhagwate, Naresh Prodduturi, Ping Yang, Jean‐Pierre Kocher

    Publicat 2016
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  4. 4
    CrossMap: a versatile tool for coordinate conversion between genome assemblies

    CrossMap: a versatile tool for coordinate conversion between genome assemblies per Hao Zhao, Zhifu Sun, Jing Wang, Haojie Huang, Jean‐Pierre Kocher, Liguo Wang

    Publicat 2013
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  5. 5
    UClncR: Ultrafast and comprehensive long non-coding RNA detection from RNA-seq

    UClncR: Ultrafast and comprehensive long non-coding RNA detection from RNA-seq per Zhifu Sun, Asha Nair, Xianfeng Chen, Naresh Prodduturi, Junwen Wang, Jean‐Pierre Kocher

    Publicat 2017
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  6. 6
    Calculating Sample Size Estimates for RNA Sequencing Data

    Calculating Sample Size Estimates for RNA Sequencing Data per Steven N. Hart, Terry M. Therneau, Yuji Zhang, Gregory A. Poland, Jean‐Pierre Kocher

    Publicat 2013
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  7. 7
    CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model

    CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model per Liguo Wang, Hyun Jung Park, Surendra Dasari, Shengqin Wang, Jean‐Pierre Kocher, Wei Li

    Publicat 2013
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  8. 8
    VCF-Miner: GUI-based application for mining variants and annotations stored in VCF files

    VCF-Miner: GUI-based application for mining variants and annotations stored in VCF files per Steven N. Hart, Patrick Duffy, Daniel Quest, Asif Hossain, Mike A Meiners, Jean‐Pierre Kocher

    Publicat 2015
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  9. 9
    CAP-miRSeq: a comprehensive analysis pipeline for microRNA sequencing data

    CAP-miRSeq: a comprehensive analysis pipeline for microRNA sequencing data per Zhifu Sun, Jared M. Evans, Aditya Bhagwate, Sumit Middha, Matthew A. Bockol, Huihuang Yan, Jean-Pierre Kocher

    Publicat 2014
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  10. 10
    Transcriptional atlas of cardiogenesis maps congenital heart disease interactome

    Transcriptional atlas of cardiogenesis maps congenital heart disease interactome per Li Xing, Almudena Martinez‐Fernandez, Katherine A. Hartjes, Jean‐Pierre Kocher, Timothy M. Olson, André Terzic, Timothy J. Nelson

    Publicat 2014
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  11. 11
    Circular RNAs and their associations with breast cancer subtypes

    Circular RNAs and their associations with breast cancer subtypes per Asha Nair, Nifang Niu, Xiaojia Tang, Kevin J. Thompson, Liewei Wang, Jean‐Pierre Kocher, Subbaya Subramanian, Krishna R. Kalari

    Publicat 2016
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  12. 12
    Prevalent Homozygous Deletions of Type I Interferon and Defensin Genes in Human Cancers Associate with Immunotherapy Resistance

    Prevalent Homozygous Deletions of Type I Interferon and Defensin Genes in Human Cancers Associate with Immunotherapy Resistance per Zhenqing Ye, Haidong Dong, Ying Li, Tao Ma, Haojie Huang, Hon S. Leong, Jeanette E. Eckel‐Passow, Jean‐Pierre Kocher, Han Liang, Liguo Wang

    Publicat 2018
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  13. 13
    Batch effect correction for genome-wide methylation data with Illumina Infinium platform

    Batch effect correction for genome-wide methylation data with Illumina Infinium platform per Zhifu Sun, High Seng Chai, Yanhong Wu, Wendy White, Krishna Vanaja Donkena, Christopher J. Klein, Vesna D. Garovic, Terry M. Therneau, Jean‐Pierre Kocher

    Publicat 2011
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  14. 14
    A new statistic for identifying batch effects in high-throughput genomic data that uses guided principal component analysis

    A new statistic for identifying batch effects in high-throughput genomic data that uses guided principal component analysis per Sarah E. Reese, Kellie J. Archer, Terry M. Therneau, Elizabeth J. Atkinson, Celine M. Vachon, Mariza de Andrade, Jean‐Pierre Kocher, Jeanette E. Eckel‐Passow

    Publicat 2013
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  15. 15
    SAAP-RRBS: streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing

    SAAP-RRBS: streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing per Zhifu Sun, Saurabh Baheti, Sumit Middha, Rahul Kanwar, Yuji Zhang, Xing Li, Andreas S. Beutler, Eric W. Klee, Yan W. Asmann, E. Aubrey Thompson, Jean‐Pierre Kocher

    Publicat 2012
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  16. 16
    Genomic Association Analysis Suggests Chromosome 12 Locus Influencing Antihypertensive Response to Thiazide Diuretic

    Genomic Association Analysis Suggests Chromosome 12 Locus Influencing Antihypertensive Response to Thiazide Diuretic per Stephen T. Turner, Kent R. Bailey, Brooke L. Fridley, Arlene B. Chapman, Gary L. Schwartz, High Seng Chai, Hugues Sicotte, Jean‐Pierre Kocher, Andréi S. Rodin, Eric Boerwinkle

    Publicat 2008
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  17. 17
    Immunopipe: a comprehensive and flexible scRNA-seq and scTCR-seq data analysis pipeline

    Immunopipe: a comprehensive and flexible scRNA-seq and scTCR-seq data analysis pipeline per Panwen Wang, Yue Yu, Haidong Dong, Shuwen Zhang, Zhifu Sun, Hu Zeng, Patrizia Mondello, Jean‐Pierre Kocher, Junwen Wang, Yan W. Asmann, Yi Lin, Ying Li

    Publicat 2025
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  18. 18
    GWASdb v2: an update database for human genetic variants identified by genome-wide association studies

    GWASdb v2: an update database for human genetic variants identified by genome-wide association studies per Mulin Jun Li, Zipeng Liu, Panwen Wang, Maria Pik Wong, Matthew R. Nelson, Jean‐Pierre Kocher, Meredith Yeager, Pak C. Sham, Stephen J. Chanock, Zhengyuan Xia, Junwen Wang

    Publicat 2015
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  19. 19
    Predicting regulatory variants with composite statistic

    Predicting regulatory variants with composite statistic per Mulin Jun Li, Zhicheng Pan, Zipeng Liu, Jiexing Wu, Panwen Wang, Yun Zhu, Feng Xu, Zhengyuan Xia, Pak C. Sham, Jean‐Pierre Kocher, Miaoxin Li, Jun S. Liu, Junwen Wang

    Publicat 2016
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  20. 20
    Concordance of Changes in Metabolic Pathways Based on Plasma Metabolomics and Skeletal Muscle Transcriptomics in Type 1 Diabetes

    Concordance of Changes in Metabolic Pathways Based on Plasma Metabolomics and Skeletal Muscle Transcriptomics in Type 1 Diabetes per Tumpa Dutta, High Seng Chai, Lawrence E. Ward, Aditya Ghosh, Xuan-Mai T. Persson, G. C. Ford, Yogish C. Kudva, Zhifu Sun, Yan W. Asmann, Jean‐Pierre Kocher, K. Sreekumaran Nair

    Publicat 2012
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