Search Results - James Nemesh

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  1. 1
    Discovery and genotyping of genome structural polymorphism by sequencing on a population scale

    Discovery and genotyping of genome structural polymorphism by sequencing on a population scale by Robert E. Handsaker, Joshua M. Korn, James Nemesh, Steven A. McCarroll

    Published 2011
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  2. 2
    Insights into variation in meiosis from 31,228 human sperm genomes

    Insights into variation in meiosis from 31,228 human sperm genomes by Avery Davis Bell, Curtis J. Mello, James Nemesh, Sara A. Brumbaugh, Alec Wysoker, Steven A. McCarroll

    Published 2020
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  3. 3
    Differential Relationship of DNA Replication Timing to Different Forms of Human Mutation and Variation

    Differential Relationship of DNA Replication Timing to Different Forms of Human Mutation and Variation by Amnon Koren, Paz Polak, James Nemesh, Jacob J. Michaelson, Jonathan Sebat, Shamil R. Sunyaev, Steven A. McCarroll

    Published 2012
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  4. 4
    Mapping genetic effects on cellular phenotypes with “cell villages”

    Mapping genetic effects on cellular phenotypes with “cell villages” by Jana M. Mitchell, James Nemesh, Sulagna Ghosh, Robert E. Handsaker, Curtis J. Mello, Daniel Meyer, Kavya Raghunathan, Heather de Rivera, Matt Tegtmeyer, Derek Hawes, Anna Neumann, Ralda Nehme, Kevin Eggan, Steven A. McCarroll

    Published 2020
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  5. 5
    Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics

    Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics by Karthik Shekhar, Sylvain W. Lapan, Irene E. Whitney, Nicholas M. Tran, Evan Z. Macosko, Monika S. Kowalczyk, Xian Adiconis, Joshua Z. Levin, James Nemesh, Melissa Goldman, Steven A. McCarroll, Constance L. Cepko, Aviv Regev, Joshua R. Sanes

    Published 2016
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  6. 6
    Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs

    Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs by Joshua M. Korn, Finny G. Kuruvilla, Steven A. McCarroll, Alec Wysoker, James Nemesh, Simon Cawley, Earl Hubbell, Jim Veitch, Patrick Collins, Katayoon Darvishi, Charles Lee, Marcia M. Nizzari, Stacey B. Gabriel, Shaun Purcell, Mark J. Daly, David Altshuler

    Published 2008
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  7. 7
    Molecular Diversity and Specializations among the Cells of the Adult Mouse Brain

    Molecular Diversity and Specializations among the Cells of the Adult Mouse Brain by Arpiar Saunders, Evan Z. Macosko, Alec Wysoker, Melissa Goldman, Fenna M. Krienen, Heather de Rivera, Elizabeth Bien, Matthew L. Baum, Laura Bortolin, Shuyu Wang, Aleksandrina Goeva, James Nemesh, Nolan Kamitaki, Sara A. Brumbaugh, David Kulp, Steven A. McCarroll

    Published 2018
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  8. 8
    Discerning the Ancestry of European Americans in Genetic Association Studies

    Discerning the Ancestry of European Americans in Genetic Association Studies by Alkes L. Price, Johannah L. Butler, Hon‐Cheong So, Cristian Capelli, Vincenzo L. Pascali, Francesca Scarnicci, Andrés Ruiz‐Linares, Leif Groop, Angelica A. Saetta, Penelope Korkolopoulou, Uri Seligsohn, Alicja Waliszewska, Christine Schirmer, Kristin Ardlie, Alexis Ramos, James Nemesh, Lori Arbeitman, David B. Goldstein, David Reich, Joel N. Hirschhorn

    Published 2008
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  9. 9
    Single-Cell RNA Sequencing of Microglia throughout the Mouse Lifespan and in the Injured Brain Reveals Complex Cell-State Changes

    Single-Cell RNA Sequencing of Microglia throughout the Mouse Lifespan and in the Injured Brain Reveals Complex Cell-State Changes by Timothy R. Hammond, Connor Dufort, Lasse Dissing‐Olesen, Stefanie Giera, Adam M. H. Young, Alec Wysoker, Alec J. Walker, Frederick Gergits, Michael Segel, James Nemesh, Samuel E. Marsh, Arpiar Saunders, Evan Z. Macosko, Florent Ginhoux, Jinmiao Chen, Robin J.M. Franklin, Xianhua Piao, Steven A. McCarroll, Beth Stevens

    Published 2018
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  10. 10
    Efficient generation of lower induced motor neurons by coupling Ngn2 expression with developmental cues

    Efficient generation of lower induced motor neurons by coupling Ngn2 expression with developmental cues by Francesco Limone, Irune Guerra San Juan, Jana M. Mitchell, Janell L.M. Smith, Kavya Raghunathan, Daniel Meyer, Sulagna Ghosh, Alexander Benavides Couto, Joseph R. Klim, Brian Joseph, John T. Gold, Curtis J. Mello, James Nemesh, Brittany Smith, Matthijs Verhage, Steven A. McCarroll, Olli Pietiläinen, Ralda Nehme, Kevin Eggan

    Published 2023
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  11. 11
    A concerted neuron–astrocyte program declines in ageing and schizophrenia

    A concerted neuron–astrocyte program declines in ageing and schizophrenia by Emi Ling, James Nemesh, Melissa Goldman, Nolan Kamitaki, Nora Reed, Robert E. Handsaker, Giulio Genovese, Jonathan Vogelgsang, Sherif Gerges, Seva Kashin, Sulagna Ghosh, John M. Esposito, Kiely Morris, Daniel Meyer, Alyssa Lutservitz, Christopher D. Mullally, Alec Wysoker, Liv Spina, Anna Neumann, Marina Hogan, Kiku Ichihara, Sabina Berretta, Steven A. McCarroll

    Published 2024
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  12. 12
    Characterization of bipolar disorder patient-specific induced pluripotent stem cells from a family reveals neurodevelopmental and mRNA expression abnormalities

    Characterization of bipolar disorder patient-specific induced pluripotent stem cells from a family reveals neurodevelopmental and mRNA expression abnormalities by Jon M. Madison, Fangjian Zhou, Aparna Nigam, Ali Hussain, Douglas Barker, Ralda Nehme, Karlijn van der Ven, Jonathan Y. Hsu, Pavlina Wolf, Morgan Fleishman, C O'Dushlaine, Samuel A. Rose, Kimberly Chambert, Frank H. Lau, Tim Ahfeldt, Erroll H. Rueckert, Steven D. Sheridan, Daniel M. Fass, James Nemesh, Thomas E. Mullen, Laurence Dahéron, Steven A. McCarroll, Pamela Sklar, Roy H. Perlis, Stephen J. Haggarty

    Published 2015
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  13. 13
    Natural variation in gene expression and viral susceptibility revealed by neural progenitor cell villages

    Natural variation in gene expression and viral susceptibility revealed by neural progenitor cell villages by Michael F. Wells, James Nemesh, Sulagna Ghosh, Jana M. Mitchell, Max R. Salick, Curtis J. Mello, Daniel Meyer, Olli Pietiläinen, Federica Piccioni, Ellen J. Guss, Kavya Raghunathan, Matthew Tegtmeyer, Derek Hawes, Anna Neumann, Kathleen A. Worringer, Daniel Ho, Sravya Kommineni, Karrie Chan, Brant K. Peterson, Joseph J. Raymond, John T. Gold, Marco T. Siekmann, Emanuela Zuccaro, Ralda Nehme, Ajamete Kaykas, Kevin Eggan, Steven A. McCarroll

    Published 2023
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  14. 14
    Pathways Disrupted in Human ALS Motor Neurons Identified through Genetic Correction of Mutant SOD1

    Pathways Disrupted in Human ALS Motor Neurons Identified through Genetic Correction of Mutant SOD1 by Evangelos Kiskinis, Jackson Sandoe, Luis A. Williams, Gabriella L. Boulting, Rob Moccia, Brian J. Wainger, Steve S.W. Han, Theodore Peng, Sebastian Thams, Shravani Mikkilineni, Cassidy Mellin, Florian T. Merkle, Brandi N. Davis‐Dusenbery, Michael J. Ziller, Derek H. Oakley, Justin K. Ichida, Stefania Di Costanzo, Nick Atwater, Morgan L. Maeder, Mathew J. Goodwin, James Nemesh, Robert E. Handsaker, Daniel Paull, Scott Noggle, Steven A. McCarroll, J. Keith Joung, Clifford J. Woolf, Robert Brown, Kevin Eggan

    Published 2014
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  15. 15
    Innovations in Primate Interneuron Repertoire

    Innovations in Primate Interneuron Repertoire by Fenna M. Krienen, Melissa Goldman, Qiangge Zhang, Ricardo C.H. del Rosario, Marta Florio, Robert Machold, Arpiar Saunders, Kirsten M. Levandowski, Heather Zaniewski, Benjamin Schuman, Carolyn W.‐H. Wu, Alyssa Lutservitz, Christopher D. Mullally, Nora Reed, Elizabeth Bien, Laura Bortolin, Marian Fernández-Otero, Jessica Lin, Alec Wysoker, James Nemesh, David Kulp, Monika Burns, Victor Tkachev, Richard S. Smith, Christopher A. Walsh, Jordane Dimidschstein, Bernardo Rudy, Leslie S. Kean, Sabina Berretta, Gord Fishell, Guoping Feng, Steven A. McCarroll

    Published 2019
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  16. 16
    Innovations present in the primate interneuron repertoire

    Innovations present in the primate interneuron repertoire by Fenna M. Krienen, Melissa Goldman, Qiangge Zhang, Ricardo C.H. del Rosario, Marta Florio, Robert Machold, Arpiar Saunders, Kirsten M. Levandowski, Heather Zaniewski, Benjamin Schuman, Carolyn W.‐H. Wu, Alyssa Lutservitz, Christopher D. Mullally, Nora Reed, Elizabeth Bien, Laura Bortolin, Marian Fernández-Otero, Jessica Lin, Alec Wysoker, James Nemesh, David Kulp, Monika Burns, Victor Tkachev, Richard S. Smith, Christopher A. Walsh, Jordane Dimidschstein, Bernardo Rudy, Leslie S. Kean, Sabina Berretta, Gord Fishell, Guoping Feng, Steven A. McCarroll

    Published 2020
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  17. 17
    A marmoset brain cell census reveals regional specialization of cellular identities

    A marmoset brain cell census reveals regional specialization of cellular identities by Fenna M. Krienen, Kirsten M. Levandowski, Heather Zaniewski, Ricardo C.H. del Rosario, Margaret E. Schroeder, Melissa Goldman, Martin Wienisch, Alyssa Lutservitz, Victoria F. Beja-Glasser, Cindy Chen, Qiangge Zhang, Ken Y. Chan, Katelyn X. Li, Jitendra Sharma, Dana McCormack, Tay Shin, Andrew Harrahill, Eric Nyase, Gagandeep Mudhar, Abigail Mauermann, Alec Wysoker, James Nemesh, Seva Kashin, Josselyn Vergara, Gabriele Chelini, Jordane Dimidschstein, Sabina Berretta, Benjamin E. Deverman, Ed Boyden, Steven A. McCarroll, Guoping Feng

    Published 2023
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  18. 18
    Mapping copy number variation by population-scale genome sequencing

    Mapping copy number variation by population-scale genome sequencing by Ryan E. Mills, Klaudia Walter, Chip Stewart, Robert E. Handsaker, Ken Chen, Can Alkan, Alexej Abyzov, Seungtai Yoon, Kai Ye, R. Keira Cheetham, Asif Chinwalla, Donald F. Conrad, Yutao Fu, Fabian Grubert, Iman Hajirasouliha, Fereydoun Hormozdiari, Lilia M. Iakoucheva, Zamin Iqbal, Shuli Kang, Jeffrey M. Kidd, Miriam K. Konkel, Joshua M. Korn, Ekta Khurana, Deniz Kural, Hugo Y. K. Lam, Jing Leng, Ruiqiang Li, Yingrui Li, Chang‐Yun Lin, Ruibang Luo, Xinmeng Jasmine Mu, James Nemesh, Heather E. Peckham, Tobias Rausch, Aylwyn Scally, Xinghua Shi, Michael P. Strömberg, Adrian M. Stütz, Alexander E. Urban, Jerilyn A. Walker, Jiantao Wu, Goo Jun, Zhengdong D. Zhang, Mark A. Batzer, Li Ding, Gábor Marth, Gil McVean, Jonathan Sebat, M Snyder, Jun Wang, Kenny Ye, Evan E. Eichler, Mark Gerstein, Matthew E. Hurles, Charles Lee, Steven A. McCarroll, Jan O. Korbel

    Published 2011
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  19. 19
    Integrating common and rare genetic variation in diverse human populations

    Integrating common and rare genetic variation in diverse human populations by David Altshuler, Richard A Gibbs, Leena Peltonen, David Altshuler, Richard A Gibbs, Leena Peltonen, Emmanouil T. Dermitzakis, S. F. Schaffner, Fuli Yu, Leena Peltonen, Emmanouil T. Dermitzakis, Penelope E. Bonnen, David Altshuler, Richard A Gibbs, Paul I. W. de Bakker, Panos Deloukas, Stacey B. Gabriel, Rhian Gwilliam, Sarah Hunt, Michael Inouye, Xiaoming Jia, Aarno Palotie, Melissa Parkin, Pamela Whittaker, Fuli Yu, Kyle Chang, Alicia Hawes, Lora Lewis, Yanru Ren, David A. Wheeler, Richard A. Gibbs, Donna M. Muzny, C. Barnes, Katayoon Darvishi, Matthew E. Hurles, Joshua M. Korn, Kati Kristiansson, Charles Lee, Steven A. McCarrol, James Nemesh, Emmanouil T. Dermitzakis, Alon Keinan, Stephen B. Montgomery, Samuela Pollack, Alkes L. Price, Nicole Soranzo, Penelope E. Bonnen, Richard A Gibbs, Claudia Gonzaga‐Jauregui, Alon Keinan, Alkes L. Price, Fuli Yu, Verneri Anttila, Wendy Brodeur, Mark J. Daly, Stephen Leslie, Gil McVean, Loukas Moutsianas, Huy Nguyen, S. F. Schaffner, Qingrun Zhang, Mohammed J. R. Ghori, Ralph McGinnis, William McLaren, Samuela Pollack, Alkes L. Price, S. F. Schaffner, Fumihiko Takeuchi, Sharon R. Grossman, Ilya Shlyakhter, Elizabeth Hostetter, Pardis C. Sabeti, Clement Adebamowo, Morris W. Foster, Deborah R Gordon, Júlio Licinio, María Cristina Manca, Patricia A. Marshall, Ichiro Matsuda, Duncan Ngare, Vivian Ota Wang, Deepa Reddy, Charles N. Rotimi, Charmaine Royal, Richard R. Sharp, Changqing Zeng, Lisa Brooks, Jean E. McEwen

    Published 2010
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  20. 20
    Contributions of common genetic variants to risk of schizophrenia among individuals of African and Latino ancestry

    Contributions of common genetic variants to risk of schizophrenia among individuals of African and Latino ancestry by Tim B. Bigdeli, Giulio Genovese, Penelope Georgakopoulos, Jacquelyn L. Meyers, Roseann E. Peterson, Conrad Iyegbe, Helena Medeiros, Jorge Valderrama, Eric D. Achtyes, Roman Kotov, Eli A. Stahl, Colony Abbott, Maria Helena Pinto de Azevedo, Richard A. Belliveau, Elizabeth Bevilacqua, Evelyn J. Bromet, William Byerley, Célia Barreto Carvalho, Sinéad B. Chapman, Lynn E. DeLisi, Ashley Dumont, Colm O’Dushlaine, Oleg V. Evgrafov, Laura J. Fochtmann, Diane Gage, James L. Kennedy, Becky Kinkead, A. Macedo, Jennifer L. Moran, Christopher P. Morley, Mantosh Dewan, James Nemesh, Diana O. Perkins, Shaun Purcell, Jeffrey J. Rakofsky, Edward M. Scolnick, Brooke M. Sklar, Pamela Sklar, Jordan W. Smoller, Patrick F. Sullivan, Fabìo Macciardi, Stephen R. Marder, Ruben C. Gur, Raquel E. Gur, David Braff, Monica E. Calkins, Robert Freedman, Michael F. Green, Tiffany A. Greenwood, Laura C. Lazzeroni, Gregory A. Light, Keith H. Nuechterlein, Allen D. Radant, Larry J. Seidman, Larry J. Siever, Jeremy M. Silverman, William S. Stone, Catherine A. Sugar, Neal R. Swerdlow, Debby W. Tsuang, Ming T. Tsuang, Bruce I. Turetsky, Humberto Nicolini, Michael Escamilla, Marquis P. Vawter, Janet L. Sobell, Dolores Malaspina, Douglas S. Lehrer, P.F. Buckley, Mark Hyman Rapaport, James A. Knowles, Ayman H. Fanous, Michele T. Pato, Steven A. McCarroll, Carlos N. Pato

    Published 2019
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