Search Results - James E. Galagan

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  1. 1
    Genomic insights into tuberculosis

    Genomic insights into tuberculosis by James E. Galagan

    Published 2014
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  2. 2
    Mechanisms of intron gain and loss in Cryptococcus

    Mechanisms of intron gain and loss in Cryptococcus by Thomas J. Sharpton, Daniel E. Neafsey, James E. Galagan, John W. Taylor

    Published 2008
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  3. 3
    Cross-kingdom patterns of alternative splicing and splice recognition

    Cross-kingdom patterns of alternative splicing and splice recognition by Abigail L. Manson, Matthew D. Pearson, Daniel E. Neafsey, James E. Galagan

    Published 2008
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  4. 4
    A blind deconvolution approach to high-resolution mapping of transcription factor binding sites from ChIP-seq data

    A blind deconvolution approach to high-resolution mapping of transcription factor binding sites from ChIP-seq data by Desmond S. Lun, Ashley M. Sherrid, Brian Weiner, David R. Sherman, James E. Galagan

    Published 2009
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  5. 5
    GenomeView: a next-generation genome browser

    GenomeView: a next-generation genome browser by Thomas Abeel, Thomas Van Parys, Yvan Saeys, James E. Galagan, Yves Van de Peer

    Published 2011
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  6. 6
    Patterns of Intron Gain and Loss in Fungi

    Patterns of Intron Gain and Loss in Fungi by Cydney Nielsen, Brad A. Friedman, Bruce W. Birren, Christopher B. Burge, James E. Galagan

    Published 2004
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  7. 7
    Genomics of the fungal kingdom: Insights into eukaryotic biology

    Genomics of the fungal kingdom: Insights into eukaryotic biology by James E. Galagan, Matthew R. Henn, Li‐Jun Ma, Christina A. Cuomo, Bruce W. Birren

    Published 2005
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  8. 8
    Reconstruction and Validation of a Genome-Scale Metabolic Model for the Filamentous Fungus Neurospora crassa Using FARM

    Reconstruction and Validation of a Genome-Scale Metabolic Model for the Filamentous Fungus Neurospora crassa Using FARM by Jonathan M. Dreyfuss, Jeremy Zucker, Heather M. Hood, Linda R. Ocasio, Matthew S. Sachs, James E. Galagan

    Published 2013
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  9. 9
    Conrad: Gene prediction using conditional random fields

    Conrad: Gene prediction using conditional random fields by David DeCaprio, Jade P. Vinson, Matthew D. Pearson, Philip Montgomery, Matthew K Doherty, James E. Galagan

    Published 2007
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  10. 10
    Human T cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved

    Human T cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved by Iñaki Comas, Jaidip Chakravartti, Peter M. Small, James E. Galagan, Stefan Niemann, Kristin Kremer, J. Ernst, Sébastien Gagneux

    Published 2010
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  11. 11
    Whole-genome sequencing of rifampicin-resistant Mycobacterium tuberculosis strains identifies compensatory mutations in RNA polymerase genes

    Whole-genome sequencing of rifampicin-resistant Mycobacterium tuberculosis strains identifies compensatory mutations in RNA polymerase genes by Iñaki Comas, Sònia Borrell, Andreas Roetzer, Graham Rose, Bijaya Malla, Midori Kato‐Maeda, James E. Galagan, Stefan Niemann, Sébastien Gagneux

    Published 2011
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  12. 12
    Large‐scale identification of genetic design strategies using local search

    Large‐scale identification of genetic design strategies using local search by Desmond S. Lun, Graham N. Rockwell, Nicholas J. Guido, Michael Baym, Jonathan A. Kelner, Bonnie Berger, James E. Galagan, George M. Church

    Published 2009
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  13. 13
    Pneumococcal Capsular Polysaccharide Structure Predicts Serotype Prevalence

    Pneumococcal Capsular Polysaccharide Structure Predicts Serotype Prevalence by Daniel M. Weinberger, Krzysztof Trzciński, Ying‐Jie Lu, Debby Bogaert, Aaron Brandes, James E. Galagan, Porter Anderson, Richard Malley, Marc Lipsitch

    Published 2009
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  14. 14
    Interpreting Expression Data with Metabolic Flux Models: Predicting Mycobacterium tuberculosis Mycolic Acid Production

    Interpreting Expression Data with Metabolic Flux Models: Predicting Mycobacterium tuberculosis Mycolic Acid Production by Caroline Colijn, Aaron Brandes, Jeremy Zucker, Desmond S. Lun, Brian Weiner, Maha Farhat, Tan‐Yun Cheng, D. Branch Moody, Megan Murray, James E. Galagan

    Published 2009
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  15. 15
    The Role of Selection in Shaping Diversity of Natural M. tuberculosis Populations

    The Role of Selection in Shaping Diversity of Natural M. tuberculosis Populations by Caitlin S. Pepperell, Amanda M. Casto, Andrew Kitchen, Julie M. Granka, Omar E. Cornejo, Edward C. Holmes, Bruce W. Birren, James E. Galagan, Marcus W. Feldman

    Published 2013
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  16. 16
    Mycobacterium tuberculosis Whole Genome Sequences From Southern India Suggest Novel Resistance Mechanisms and the Need for Region-Specific Diagnostics

    Mycobacterium tuberculosis Whole Genome Sequences From Southern India Suggest Novel Resistance Mechanisms and the Need for Region-Specific Diagnostics by Abigail L. Manson, Thomas Abeel, James E. Galagan, Jagadish Chandrabose Sundaramurthi, Alex Salazar, Thies Gehrmann, Siva Kumar Shanmugam, Kannan Palaniyandi, Sujatha Narayanan, Soumya Swaminathan, Ashlee M. Earl

    Published 2017
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  17. 17
    Redefining fundamental concepts of transcription initiation in bacteria

    Redefining fundamental concepts of transcription initiation in bacteria by Citlalli Mejía-Almonte, Stephen Busby, Joseph T. Wade, Jacques van Helden, Adam P. Arkin, Gary D. Stormo, Karen Eilbeck, Bernhard Ø. Palsson, James E. Galagan, Julio Collado‐Vides

    Published 2020
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  18. 18
    Comprehensive Definition of the SigH Regulon of Mycobacterium tuberculosis Reveals Transcriptional Control of Diverse Stress Responses

    Comprehensive Definition of the SigH Regulon of Mycobacterium tuberculosis Reveals Transcriptional Control of Diverse Stress Responses by Jared D. Sharp, Atul K. Singh, Sang Tae Park, Anna Lyubetskaya, Matthew Peterson, Antonio L. C. Gomes, Lakshmi‐Prasad Potluri, Sahadevan Raman, James E. Galagan, Robert N. Husson

    Published 2016
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  19. 19
    Short-term genome evolution of Listeria monocytogenes in a non-controlled environment

    Short-term genome evolution of Listeria monocytogenes in a non-controlled environment by Renato H. Orsi, Mark L. Borowsky, Peter Lauer, Sarah Young, Chad Nusbaum, James E. Galagan, Bruce W. Birren, Reid A. Ivy, Qi Sun, Lewis M. Graves, Bala Swaminathan, Martin Wiedmann

    Published 2008
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  20. 20
    Predictive biophysical neural network modeling of a compendium of in vivo transcription factor DNA binding profiles for Escherichia coli

    Predictive biophysical neural network modeling of a compendium of in vivo transcription factor DNA binding profiles for Escherichia coli by Patrick Lally, Laura Gómez-Romero, Víctor H. Tierrafría, Patricia Aquino, Claire Rioualen, Xiaoman Zhang, Sunyoung Kim, Gabriele Baniulyte, Jonathan Plitnick, Carol Smith, Mohan Babu, Julio Collado‐Vides, Joseph T. Wade, James E. Galagan

    Published 2025
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