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  1. 1
    A molecular portrait of microsatellite instability across multiple cancers

    A molecular portrait of microsatellite instability across multiple cancers 由 Isidro Cortés‐Ciriano, Sejoon Lee, Woong‐Yang Park, Tae‐Min Kim, Peter J. Park

    出版 2017
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  2. 2
    Prediction of the potency of mammalian cyclooxygenase inhibitors with ensemble proteochemometric modeling

    Prediction of the potency of mammalian cyclooxygenase inhibitors with ensemble proteochemometric modeling 由 Isidro Cortés‐Ciriano, Daniel S Murrell, Gerard J. P. van Westen, Andreas Bender, Thérèse E. Malliavin

    出版 2015
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  3. 3
    Improved large-scale prediction of growth inhibition patterns using the NCI60 cancer cell line panel

    Improved large-scale prediction of growth inhibition patterns using the NCI60 cancer cell line panel 由 Isidro Cortés‐Ciriano, Gerard J. P. van Westen, Guillaume Bouvier, Michaël Nilges, John P. Overington, Andreas Bender, Thérèse E. Malliavin

    出版 2015
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  4. 4
    De novo detection of somatic mutations in high-throughput single-cell profiling data sets

    De novo detection of somatic mutations in high-throughput single-cell profiling data sets 由 Francesc Muyas, Carolin M. Sauer, Jose Espejo Valle-Inclán, Ruoyan Li, Raheleh Rahbari, Thomas J. Mitchell, Sahand Hormoz, Isidro Cortés‐Ciriano

    出版 2023
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  5. 5
    Benchmarking of protein descriptor sets in proteochemometric modeling (part 2): modeling performance of 13 amino acid descriptor sets

    Benchmarking of protein descriptor sets in proteochemometric modeling (part 2): modeling performance of 13 amino acid descriptor sets 由 Gerard J. P. van Westen, Remco F Swier, Isidro Cortés‐Ciriano, Jörg K. Wegner, John P. Overington, Adriaan P. IJzerman, Herman WT van Vlijmen, Andreas Bender

    出版 2013
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  6. 6
    Accurate detection of mosaic variants in sequencing data without matched controls

    Accurate detection of mosaic variants in sequencing data without matched controls 由 Yanmei Dou, Minseok Kwon, Rachel E. Rodin, Isidro Cortés‐Ciriano, Ryan N. Doan, Lovelace J. Luquette, Alon Galor, Craig L. Bohrson, Christopher A. Walsh, Peter J. Park

    出版 2020
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  7. 7
    Non-homologous end joining shapes the genomic rearrangement landscape of chromothripsis from mitotic errors

    Non-homologous end joining shapes the genomic rearrangement landscape of chromothripsis from mitotic errors 由 Qing Hu, Jose Espejo Valle-Inclán, Rashmi Dahiya, Alison Guyer, Alice Mazzagatti, Elizabeth G. Maurais, Justin L. Engel, Huiming Lu, Anthony J. Davis, Isidro Cortés‐Ciriano, Peter Ly

    出版 2024
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  8. 8
    Mitotic clustering of pulverized chromosomes from micronuclei

    Mitotic clustering of pulverized chromosomes from micronuclei 由 Yu-Fen Lin, Qing Hu, Alice Mazzagatti, Jose Espejo Valle-Inclán, Elizabeth G. Maurais, Rashmi Dahiya, Alison Guyer, Jacob T. Sanders, Justin L. Engel, Giaochau Nguyen, Daniel Bronder, Samuel F. Bakhoum, Isidro Cortés‐Ciriano, Peter Ly

    出版 2023
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  9. 9
    Linked-read analysis identifies mutations in single-cell DNA-sequencing data

    Linked-read analysis identifies mutations in single-cell DNA-sequencing data 由 Craig L. Bohrson, Alison R. Barton, Michael A. Lodato, Rachel E. Rodin, Lovelace J. Luquette, Vinay Viswanadham, D. Gulhan, Isidro Cortés‐Ciriano, Maxwell A. Sherman, Min‐Seok Kwon, Michael E. Coulter, Alon Galor, Christopher A. Walsh, Peter J. Park

    出版 2019
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  10. 10
    ERα-associated translocations underlie oncogene amplifications in breast cancer

    ERα-associated translocations underlie oncogene amplifications in breast cancer 由 Jake June-Koo Lee, Youngsook L. Jung, Taek-Chin Cheong, Jose Espejo Valle-Inclán, Chong Chu, D. Gulhan, Viktor Ljungström, Hu Jin, Vinay Viswanadham, Emma V. Watson, Isidro Cortés‐Ciriano, Stephen J. Elledge, Roberto Chiarle, David Pellman, Peter J. Park

    出版 2023
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  11. 11
    Ongoing chromothripsis underpins osteosarcoma genome complexity and clonal evolution

    Ongoing chromothripsis underpins osteosarcoma genome complexity and clonal evolution 由 Jose Espejo Valle-Inclán, Solange De Noon, Katherine Trevers, Hillary Elrick, Ianthe A. E. M. van Belzen, Sonia Zumalave, Carolin M. Sauer, M. Tanguy, Thomas Butters, Francesc Muyas, Alistair G. Rust, Fernanda Amary, Roberto Tirabosco, Adam Giess, Alona Sosinsky, Greg Elgar, Adrienne M. Flanagan, Isidro Cortés‐Ciriano

    出版 2025
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  12. 12
    The Impact of Environmental and Endogenous Damage on Somatic Mutation Load in Human Skin Fibroblasts

    The Impact of Environmental and Endogenous Damage on Somatic Mutation Load in Human Skin Fibroblasts 由 Natalie Saini, Steven A. Roberts, Leszek J. Klimczak, Kin Chan, Sara A. Grimm, Shuang-Shuang Dai, David C. Fargo, Jayne C. Boyer, William K. Kaufmann, Jack A. Taylor, Eunjung Lee, Isidro Cortés‐Ciriano, Peter J. Park, Shepherd H. Schurman, Ewa P. Malc, Piotr A. Mieczkowski, Dmitry A. Gordenin

    出版 2016
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  13. 13
    Reconstructing the Lineage Histories and Differentiation Trajectories of Individual Cancer Cells in Myeloproliferative Neoplasms

    Reconstructing the Lineage Histories and Differentiation Trajectories of Individual Cancer Cells in Myeloproliferative Neoplasms 由 Debra Van Egeren, Javier Escabi, Maximilian Nguyen, Shichen Liu, Christopher R. Reilly, Sachin Patel, Baransel Kamaz, Maria Kalyva, Daniel J. DeAngelo, Ilene Galinsky, Martha Wadleigh, Eric S. Winer, Marlise R. Luskin, Richard M. Stone, Jacqueline S. Garcia, Gabriela S. Hobbs, Fernando D. Camargo, Franziska Michor, Ann Mullally, Isidro Cortés‐Ciriano, Sahand Hormoz

    出版 2021
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  14. 14
    Mismatch repair deficiency is not sufficient to elicit tumor immunogenicity

    Mismatch repair deficiency is not sufficient to elicit tumor immunogenicity 由 Peter M.K. Westcott, Francesc Muyas, Haley Hauck, Olivia Smith, Nathan Sacks, Zackery A. Ely, Alex M. Jaeger, William M. Rideout, Daniel Zhang, Arjun Bhutkar, Mary C. Beytagh, David Canner, Grissel C. Jaramillo, Roderick T. Bronson, Santiago Naranjo, Abbey Jin, J. J. Patten, Amanda M. Cruz, Sean-Luc Shanahan, Isidro Cortés‐Ciriano, Tyler Jacks

    出版 2023
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  15. 15
    SAVANA: reliable analysis of somatic structural variants and copy number aberrations using long-read sequencing

    SAVANA: reliable analysis of somatic structural variants and copy number aberrations using long-read sequencing 由 Hillary Elrick, Carolin M. Sauer, Jose Espejo Valle-Inclán, Katherine Trevers, M. Tanguy, Sonia Zumalave, Solange De Noon, Francesc Muyas, Rita Cascão, Ângela Afonso, Alistair G. Rust, Fernanda Amary, Roberto Tirabosco, Adam Giess, Timothy M. Freeman, Alona Sosinsky, Katherine Piculell, David T. Miller, Cláudia C. Faria, Greg Elgar, Adrienne M. Flanagan, Isidro Cortés‐Ciriano

    出版 2025
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  16. 16
    A comprehensive clinically informed map of dependencies in cancer cells and framework for target prioritization

    A comprehensive clinically informed map of dependencies in cancer cells and framework for target prioritization 由 Clare Pacini, Emma L. Duncan, Emanuel Gonçalves, James Gilbert, Shriram G. Bhosle, Stuart Horswell, Emre Karakoç, Howard Lightfoot, Edward Curry, Francesc Muyas, Monsif Bouaboula, Chandra Sekhar Pedamallu, Isidro Cortés‐Ciriano, Fiona M. Behan, Lykourgos‐Panagiotis Zalmas, Andrew Barthorpe, Hayley E. Francies, Steve Rowley, Jack Pollard, Pedro Beltrão, Leopold Parts, Francesco Iorio, Mathew J. Garnett

    出版 2024
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  17. 17
    Cancer-independent somatic mutation of the wild-type NF1 allele in normal tissues in neurofibromatosis type 1

    Cancer-independent somatic mutation of the wild-type NF1 allele in normal tissues in neurofibromatosis type 1 由 Thomas R. W. Oliver, Andrew Lawson, Henry Lee-Six, Anna Tollit, Hyunchul Jung, Yvette Hooks, Rashesh Sanghvi, Matthew D. Young, Timothy Butler, Pantelis Nicola, Taryn D. Treger, Stefanie V. Lensing, G.A. Amos Burke, Kristian Aquilina, Ulrike Löbel, Isidro Cortés‐Ciriano, Darren Hargrave, Mette Jorgensen, F. A. Jessop, Tim H. H. Coorens, Adrienne M. Flanagan, Kieren Allinson, Iñigo Martincorena, Thomas S. Jacques, Sam Behjati

    出版 2025
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  18. 18
    Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer

    Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer 由 Ruoyan Li, John R. Ferdinand, Kevin W. Loudon, Georgina Bowyer, Sean Laidlaw, Francesc Muyas, Lira Mamanova, Joana B. Neves, Liam Bolt, Eirini S. Fasouli, Andrew Lawson, Matthew D. Young, Yvette Hooks, Thomas R. W. Oliver, Timothy Butler, James N. Armitage, Tev Aho, Antony C.P. Riddick, Vincent J. Gnanapragasam, Sarah J. Welsh, Kerstin B. Meyer, Anne Y. Warren, Maxine Tran, Grant D. Stewart, Isidro Cortés‐Ciriano, Sam Behjati, Menna R. Clatworthy, Peter J. Campbell, Sarah A. Teichmann, Thomas J. Mitchell

    出版 2022
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  19. 19
    Genomic Patterns of Malignant Peripheral Nerve Sheath Tumor (MPNST) Evolution Correlate with Clinical Outcome and Are Detectable in Cell-Free DNA

    Genomic Patterns of Malignant Peripheral Nerve Sheath Tumor (MPNST) Evolution Correlate with Clinical Outcome and Are Detectable in Cell-Free DNA 由 Isidro Cortés‐Ciriano, Christopher D. Steele, Katherine Piculell, Alyaa Al‐Ibraheemi, Vanessa Eulo, Marilyn M. Bui, Aikaterini Chatzipli, Brendan C. Dickson, Dana C. Borcherding, Andrew Feber, Alon Galor, Jesse Hart, Kevin B. Jones, Justin T. Jordan, Raymond H. Kim, Daniel Lindsay, Colin Miller, Yoshihiro Nishida, Paula Proszek, Jonathan Serrano, R. Taylor Sundby, Jeffrey J. Szymanski, Nicole J. Ullrich, David Viskochil, Xia Wang, Matija Snuderl, Peter J. Park, Adrienne M. Flanagan, Angela C. Hirbe, Nischalan Pillay, David T. Miller

    出版 2023
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  20. 20
    High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations

    High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations 由 Yiqun Zhang, Fengju Chen, Nuno A. Fonseca, Yao He, Masashi Fujita, Hidewaki Nakagawa, Zemin Zhang, Alvis Brāzma, Samirkumar B. Amin, Philip Awadalla, Peter J. Bailey, Alvis Brāzma, Angela N. Brooks, Claudia Calabrese, Aurélien Chateigner, Isidro Cortés‐Ciriano, Brian Craft, David Craft, Chad J. Creighton, Natalie R. Davidson, Deniz Demircioğlu, Serap Erkek, Nuno A. Fonseca, Milana Frenkel‐Morgenstern, Mary J. Goldman, Liliana Greger, Jonathan Göke, Yao He, Katherine A. Hoadley, Yong Hou, Matthew R. Huska, André Kahles, Ekta Khurana, Helena Kilpinen, Jan O. Korbel, Fabien C. Lamaze, Kjong-Van Lehmann, David K. Chang, Siliang Li, Xiaobo Li, Xinyue Li, Dongbing Liu, Fenglin Liu, Xingmin Liu, Maximillian G. Marin, Julia Markowski, Matthew Meyerson, Tannistha Nandi, Morten Muhlig Nielsen, Akinyemi I. Ojesina, B. F. Francis Ouellette, Qiang Pan‐Hammarström, Peter J. Park, Chandra Sekhar Pedamallu, Jakob Skou Pedersen, Marc D. Perry, Gunnar Rätsch, Roland F. Schwarz, Yuichi Shiraishi, Reiner Siebert, Cameron M. Soulette, Stefan G. Stark, Oliver Stegle, Hong Su, Patrick Tan, Bin Tean Teh, Lara Urban, Jian Wang, Sebastian M. Waszak, Kui Wu, Qian Xiang, Heng Xiong, Sergei Yakneen, Huanming Yang, Chen Ye, Christina K. Yung, Fan Zhang, Junjun Zhang, Xiuqing Zhang, Zemin Zhang, Liangtao Zheng, Jingchun Zhu, Shida Zhu, Kadir C. Akdemir, Eva G. Álvarez, Adrian Baez‐Ortega, Rameen Beroukhim, Paul C. Boutros, David D.L. Bowtell, Benedikt Brors, Kathleen H. Burns, Peter J. Campbell, Kin Chan, Ken Chen, Isidro Cortés‐Ciriano, Ana Dueso-Barroso, Andrew Dunford, Paul A. Edwards, Xavier Estivill, Dariush Etemadmoghadam

    出版 2020
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