Risultati della ricerca - Ishida, Takashi

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  1. 1
    PrDOS: prediction of disordered protein regions from amino acid sequence

    PrDOS: prediction of disordered protein regions from amino acid sequence di Ishida, Takashi, Kinoshita, Kengo

    Pubblicazione 2007
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  2. 2
    Protein model accuracy estimation based on local structure quality assessment using 3D convolutional neural network

    Protein model accuracy estimation based on local structure quality assessment using 3D convolutional neural network di Sato, Rin, Ishida, Takashi

    Pubblicazione 2019
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  3. 3
    Sequence alignment generation using intermediate sequence search for homology modeling

    Sequence alignment generation using intermediate sequence search for homology modeling di Makigaki, Shuichiro, Ishida, Takashi

    Pubblicazione 2020
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  4. 4
    Sequence Alignment Using Machine Learning for Accurate Template-based Protein Structure Prediction

    Sequence Alignment Using Machine Learning for Accurate Template-based Protein Structure Prediction di Makigaki, Shuichiro, Ishida, Takashi

    Pubblicazione 2020
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  5. 5
    P3CMQA: Single-Model Quality Assessment Using 3DCNN with Profile-Based Features

    P3CMQA: Single-Model Quality Assessment Using 3DCNN with Profile-Based Features di Takei, Yuma, Ishida, Takashi

    Pubblicazione 2021
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  6. 6
    End-to-end learning for compound activity prediction based on binding pocket information

    End-to-end learning for compound activity prediction based on binding pocket information di Tanebe, Toshitaka, Ishida, Takashi

    Pubblicazione 2021
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  7. 7
    A Benchmark Dataset for Evaluating Practical Performance of Model Quality Assessment of Homology Models

    A Benchmark Dataset for Evaluating Practical Performance of Model Quality Assessment of Homology Models di Takei, Yuma, Ishida, Takashi

    Pubblicazione 2022
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  8. 8
    Protein Model Quality Estimation Using Molecular Dynamics Simulation

    Protein Model Quality Estimation Using Molecular Dynamics Simulation di Kurniawan, Jason, Ishida, Takashi

    Pubblicazione 2022
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  9. 9
    Identification of transient hub proteins and the possible structural basis for their multiple interactions

    Identification of transient hub proteins and the possible structural basis for their multiple interactions di Higurashi, Miho, Ishida, Takashi, Kinoshita, Kengo

    Pubblicazione 2008
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  10. 10
    Effects of surface-to-volume ratio of proteins on hydrophilic residues: Decrease in occurrence and increase in buried fraction

    Effects of surface-to-volume ratio of proteins on hydrophilic residues: Decrease in occurrence and increase in buried fraction di Shirota, Matsuyuki, Ishida, Takashi, Kinoshita, Kengo

    Pubblicazione 2008
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  11. 11
    PiSite: a database of protein interaction sites using multiple binding states in the PDB

    PiSite: a database of protein interaction sites using multiple binding states in the PDB di Higurashi, Miho, Ishida, Takashi, Kinoshita, Kengo

    Pubblicazione 2009
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  12. 12
    Analyses on hydrophobicity and attractiveness of all-atom distance-dependent potentials

    Analyses on hydrophobicity and attractiveness of all-atom distance-dependent potentials di Shirota, Matsuyuki, Ishida, Takashi, Kinoshita, Kengo

    Pubblicazione 2009
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  13. 13
    Acceleration of sequence clustering using longest common subsequence filtering

    Acceleration of sequence clustering using longest common subsequence filtering di Namiki, Youhei, Ishida, Takashi, Akiyama, Yutaka

    Pubblicazione 2013
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  14. 14
    Location, Location, Location: How Vascular Specialization Influences Hematopoietic Fates During Development

    Location, Location, Location: How Vascular Specialization Influences Hematopoietic Fates During Development di Heck, Adam M., Ishida, Takashi, Hadland, Brandon

    Pubblicazione 2020
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  15. 15
    Helical microtubule arrays in a collection of twisting tubulin mutants of Arabidopsis thaliana

    Helical microtubule arrays in a collection of twisting tubulin mutants of Arabidopsis thaliana di Ishida, Takashi, Kaneko, Yayoi, Iwano, Megumi, Hashimoto, Takashi

    Pubblicazione 2007
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  16. 16
    GHOSTM: A GPU-Accelerated Homology Search Tool for Metagenomics

    GHOSTM: A GPU-Accelerated Homology Search Tool for Metagenomics di Suzuki, Shuji, Ishida, Takashi, Kurokawa, Ken, Akiyama, Yutaka

    Pubblicazione 2012
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  17. 17
    MMS21/HPY2 and SIZ1, Two Arabidopsis SUMO E3 Ligases, Have Distinct Functions in Development

    MMS21/HPY2 and SIZ1, Two Arabidopsis SUMO E3 Ligases, Have Distinct Functions in Development di Ishida, Takashi, Yoshimura, Mika, Miura, Kenji, Sugimoto, Keiko

    Pubblicazione 2012
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  18. 18
    GHOSTX: An Improved Sequence Homology Search Algorithm Using a Query Suffix Array and a Database Suffix Array

    GHOSTX: An Improved Sequence Homology Search Algorithm Using a Query Suffix Array and a Database Suffix Array di Suzuki, Shuji, Kakuta, Masanori, Ishida, Takashi, Akiyama, Yutaka

    Pubblicazione 2014
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  19. 19
    Faster sequence homology searches by clustering subsequences

    Faster sequence homology searches by clustering subsequences di Suzuki, Shuji, Kakuta, Masanori, Ishida, Takashi, Akiyama, Yutaka

    Pubblicazione 2015
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  20. 20
    GPU-Acceleration of Sequence Homology Searches with Database Subsequence Clustering

    GPU-Acceleration of Sequence Homology Searches with Database Subsequence Clustering di Suzuki, Shuji, Kakuta, Masanori, Ishida, Takashi, Akiyama, Yutaka

    Pubblicazione 2016
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