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  1. 1
    Integration and Analysis of CPTAC Proteomics Data in the Context of Cancer Genomics in the cBioPortal

    Integration and Analysis of CPTAC Proteomics Data in the Context of Cancer Genomics in the cBioPortal 由 Pamela Wu, Zachary Heins, James Muller, Lizabeth Katsnelson, Ino de Bruijn, Adam Abeshouse, Nikolaus Schultz, David Fenyö, Jianjiong Gao

    出版 2019
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  2. 2
    CONCOCT: Clustering cONtigs on COverage and ComposiTion

    CONCOCT: Clustering cONtigs on COverage and ComposiTion 由 Johannes Alneberg, Brynjar Smári Bjarnason, Ino de Bruijn, Melanie Schirmer, Joshua Quick, Umer Zeeshan Ijaz, Nicholas J. Loman, Anders F. Andersson, Christopher Quince

    出版 2013
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  3. 3
    Multiomic Integration of Public Oncology Databases in Bioconductor

    Multiomic Integration of Public Oncology Databases in Bioconductor 由 Marcel Ramos, Ludwig Geistlinger, Sehyun Oh, Lucas Schiffer, Rimsha Azhar, Hanish Kodali, Ino de Bruijn, Jianjiong Gao, Vincent J. Carey, Martin Morgan, Levi Waldron

    出版 2020
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  4. 4
    Transgenic mice carrying the apolipoprotein E3-Leiden gene exhibit hyperlipoproteinemia

    Transgenic mice carrying the apolipoprotein E3-Leiden gene exhibit hyperlipoproteinemia 由 Arn M. J. M. van den Maagdenberg, Marten H. Hofker, Paul Krimpenfort, Ino de Bruijn, Bas van Vlijmen, Hans van der Boom, Louis M. Havekes, Rune R. Frants

    出版 1993
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  5. 5
    Genomic and transcriptomic heterogeneity in metaplastic carcinomas of the breast

    Genomic and transcriptomic heterogeneity in metaplastic carcinomas of the breast 由 Salvatore Piscuoglio, Charlotte K.Y. Ng, Felipe C. Geyer, Kathleen A. Burke, Catherine F. Cowell, Luciano G. Martelotto, Rachael Natrajan, Tatiana Popova, Christopher A. Maher, Raymond S. Lim, Ino de Bruijn, Odette Mariani, Larry Norton, Anne Vincent‐Salomon, Britta Weigelt, Jorge S. Reis‐Filho

    出版 2017
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  6. 6
    Genetic Heterogeneity in Therapy-Naïve Synchronous Primary Breast Cancers and Their Metastases

    Genetic Heterogeneity in Therapy-Naïve Synchronous Primary Breast Cancers and Their Metastases 由 Charlotte K.Y. Ng, François‐Clément Bidard, Salvatore Piscuoglio, Felipe C. Geyer, Raymond S. Lim, Ino de Bruijn, Ronglai Shen, Fresia Pareja, Samuel H. Berman, Lu Wang, Jean‐Yves Pierga, Anne Vincent‐Salomon, Agnès Viale, Larry Norton, Brigitte Sigal, Britta Weigelt, Paul Cottu, Jorge S. Reis‐Filho

    出版 2017
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  7. 7
    Uterine adenosarcomas are mesenchymal neoplasms

    Uterine adenosarcomas are mesenchymal neoplasms 由 Salvatore Piscuoglio, Kathleen A. Burke, Charlotte K.Y. Ng, Anastasios D. Papanastasiou, Felipe C. Geyer, Gabriel S. Macedo, Luciano G. Martelotto, Ino de Bruijn, Maria Rosaria De Filippo, Anne M. Schultheis, Rafael A Ioris, Douglas A. Levine, Robert A. Soslow, Brian P. Rubin, Jorge S. Reis‐Filho, Britta Weigelt

    出版 2015
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  8. 8
    Diverse <i>BRCA1</i> and <i>BRCA2</i> Reversion Mutations in Circulating Cell-Free DNA of Therapy-Resistant Breast or Ovarian Cancer

    Diverse <i>BRCA1</i> and <i>BRCA2</i> Reversion Mutations in Circulating Cell-Free DNA of Therapy-Resistant Breast or Ovarian Cancer 由 Britta Weigelt, Iñaki Comino‐Méndez, Ino de Bruijn, Lei Tian, Jane Meisel, Isaac García-Murillas, Charlotte Fribbens, Ros Cutts, Luciano G. Martelotto, Charlotte K.Y. Ng, Raymond S. Lim, Pier Selenica, Salvatore Piscuoglio, Carol Aghajanian, Larry Norton, Rajmohan Murali, David M. Hyman, Laetitia Borsu, Maria E. Arcila, Jason Konner, Jorge S. Reis‐Filho, Roger A. Greenberg, Mark E. Robson, Nicholas C. Turner

    出版 2017
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  9. 9
    Massively parallel sequencing of phyllodes tumours of the breast reveals actionable mutations, and <i><scp>TERT</scp></i> promoter hotspot mutations and <i>TERT</i> gene amplification as likely drivers of progression

    Massively parallel sequencing of phyllodes tumours of the breast reveals actionable mutations, and <i><scp>TERT</scp></i> promoter hotspot mutations and <i>TERT</i> gene amplificat... 由 Salvatore Piscuoglio, Charlotte K.Y. Ng, Melissa P. Murray, Kathleen A. Burke, Marcia Edelweiss, Felipe C. Geyer, Gabriel S. Macedo, Akiko Inagaki, Anastasios D. Papanastasiou, Luciano G. Martelotto, Caterina Marchiò, Raymond S. Lim, Rafael A Ioris, Pooja K Nahar, Ino de Bruijn, Lillian M. Smyth, Muzaffar Akram, Dara S. Ross, John H.J. Petrini, Larry Norton, David B. Solit, José Baselga, Edi Brogi, Marc Ladanyi, Britta Weigelt, Jorge S. Reis‐Filho

    出版 2015
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  10. 10
    Sharing data from the Human Tumor Atlas Network through standards, infrastructure and community engagement

    Sharing data from the Human Tumor Atlas Network through standards, infrastructure and community engagement 由 Ino de Bruijn, Milen Nikolov, Clarisse Lau, Ashley Clayton, David L. Gibbs, Elvira Mitraka, Dar’ya Pozhidayeva, Alex E. Lash, S. Onur Sumer, Jennifer Altreuter, Kristen Anton, Mialy DeFelice, Xiang Li, Aaron Lisman, William J.R. Longabaugh, Jeremy L. Muhlich, Sandro Santagata, Subhiksha Nandakumar, Peter K. Sorger, Christine Suver, Xengie Doan, Justin Guinney, Nikolaus Schultz, Adam Taylor, Vésteinn Thórsson, Ethan Cerami, James A. Eddy

    出版 2025
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  11. 11
    The GENIE BPC NSCLC Cohort: A Real-World Repository Integrating Standardized Clinical and Genomic Data for 1,846 Patients with Non–Small Cell Lung Cancer

    The GENIE BPC NSCLC Cohort: A Real-World Repository Integrating Standardized Clinical and Genomic Data for 1,846 Patients with Non–Small Cell Lung Cancer 由 Noura J. Choudhury, Jessica A. Lavery, Samantha Brown, Ino de Bruijn, Justin Jee, Thinh Ngoc Tran, Hira Rizvi, Kathryn C. Arbour, Karissa Whiting, Ronglai Shen, Matthew D. Hellmann, Philippe L. Bédard, Celeste Yu, Natasha B. Leighl, Michele L. Lenoue-Newton, Christine Micheel, Jeremy L. Warner, Michelle S. Ginsberg, Andrew J. Plodkowski, Jeffrey Girshman, Peter Sawan, Shirin Pillai, Shawn M. Sweeney, Kenneth L. Kehl, Katherine S. Panageas, Nikolaus Schultz, Deborah Schrag, Gregory J. Riely

    出版 2023
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  12. 12
    The evolution of RET inhibitor resistance in RET-driven lung and thyroid cancers

    The evolution of RET inhibitor resistance in RET-driven lung and thyroid cancers 由 Ezra Rosen, Helen Won, Youyun Zheng, Emiliano Cocco, Duygu Selcuklu, Yixiao Gong, Noah D. Friedman, Ino de Bruijn, S. Onur Sumer, Craig M. Bielski, Casey Savin, Caitlin Bourque, Christina J. Falcon, Nikeysha Clarke, Xiaohong Jing, Fanli Meng, Catherine Zimel, Sophie Shifman, Srushti Kittane, Fan Wu, Marc Ladanyi, Kevin Ebata, Jennifer Kherani, Barbara J. Brandhuber, James A. Fagin, Eric J. Sherman, Natasha Rekhtman, Michael F. Berger, Maurizio Scaltriti, David M. Hyman, Barry S. Taylor, Alexander Drilon

    出版 2022
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  13. 13
    Loss-of-function mutations in ATP6AP1 and ATP6AP2 in granular cell tumors

    Loss-of-function mutations in ATP6AP1 and ATP6AP2 in granular cell tumors 由 Fresia Pareja, Alissa Brandes, Thais Basili, Pier Selenica, Felipe C. Geyer, Dan Fan, Arnaud Da Cruz Paula, Rahul Kumar, David Brown, Rodrigo Gularte‐Mérida, Bárbara Alemar, Rui Bi, Raymond S. Lim, Ino de Bruijn, Sho Fujisawa, Rui Gardner, Elvin Feng, Anqi Li, Edaise M. da Silva, John R. Lozada, Pedro Blecua, Leona Cohen‐Gould, Achim A. Jungbluth, Emad A. Rakha, Ian O. Ellis, Maria I. Edelweiss, Juan Palazzo, Larry Norton, Travis J. Hollmann, Marcia Edelweiss, Brian P. Rubin, Britta Weigelt, Jorge S. Reis‐Filho

    出版 2018
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  14. 14
    The context-specific role of germline pathogenicity in tumorigenesis

    The context-specific role of germline pathogenicity in tumorigenesis 由 Preethi Srinivasan, Chaitanya Bandlamudi, Philip Jonsson, Yelena Kemel, Shweta S. Chavan, Allison L. Richards, Alexander Penson, Craig M. Bielski, Christopher J. Fong, Aijazuddin Syed, Gowtham Jayakumaran, Meera Prasad, Jason Hwee, S. Onur Sumer, Ino de Bruijn, Xiang Li, Jianjiong Gao, Nikolaus Schultz, Roy Cambria, Jesse Galle, Semanti Mukherjee, Joseph Vijai, Karen A. Cadoo, Maria I. Carlo, Michael F. Walsh, Diana Mandelker, Ozge Ceyhan‐Birsoy, Jinru Shia, Ahmet Zehir, Marc Ladanyi, David M. Hyman, Liying Zhang, Kenneth Offit, Mark E. Robson, David B. Solit, Zsofia K. Stadler, Michael F. Berger, Barry S. Taylor

    出版 2021
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  15. 15
    High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants

    High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants 由 Pedram Razavi, Bob T. Li, David Brown, Byoungsok Jung, Earl Hubbell, Ronglai Shen, Wassim Abida, Krishna Juluru, Ino de Bruijn, Chenlu Hou, Oliver Venn, Raymond S. Lim, Aseem Anand, Tara Maddala, Sante Gnerre, Ravi Vijaya Satya, Qin‐Wen Liu, Ling Shen, Nicholas Eattock, Jeanne Yue, Alexander W. Blocker, Mark Lee, Amy J. Sehnert, Hui Xu, Megan P. Hall, Angie Santiago-Zayas, William Novotny, James M. Isbell, Valerie W. Rusch, George Plitas, Alexandra S. Heerdt, Marc Ladanyi, David M. Hyman, David R. Jones, Monica Morrow, Gregory J. Riely, Howard I. Scher, Charles M. Rudin, Mark E. Robson, Luis A. Díaz, David B. Solit, Alexander M. Aravanis, Jorge S. Reis‐Filho

    出版 2019
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  16. 16
    Automated real-world data integration improves cancer outcome prediction

    Automated real-world data integration improves cancer outcome prediction 由 Justin Jee, Christopher J. Fong, Karl Pichotta, Thinh Ngoc Tran, Anisha Luthra, Michele Waters, Chenlian Fu, Mirella L. Altoé, Siyang Liu, Steven B. Maron, Mehnaj Ahmed, Susie Kim, Mono Pirun, Walid K. Chatila, Ino de Bruijn, Arfath Pasha, Ritika Kundra, Benjamin Groß, Brooke Mastrogiacomo, Tyler Aprati, David Liu, Jianjiong Gao, Marzia Capelletti, Kelly Pekala, Lisa Loudon, Maria Perry, Chaitanya Bandlamudi, Mark T.A. Donoghue, Baby A. Satravada, Axel Martin, Ronglai Shen, Yuan Chen, A. Rose Brannon, Jason C. Chang, Lior Z. Braunstein, Anyi Li, Anton Safonov, Aaron J. Stonestrom, Pablo Sánchez Vela, Clare Wilhelm, Mark E. Robson, Howard I. Scher, Marc Ladanyi, Jorge S. Reis‐Filho, David B. Solit, David R. Jones, Daniel R. Gomez, Helena A. Yu, Debyani Chakravarty, Rona Yaeger, Wassim Abida, Wungki Park, Eileen M. O’Reilly, Julio García‐Aguilar, Nicholas D. Socci, Francisco Sánchez-Vega, Jian Carrot‐Zhang, Peter D. Stetson, Ross L. Levine, Charles M. Rudin, Michael F. Berger, Sohrab P. Shah, Deborah Schrag, Pedram Razavi, Kenneth L. Kehl, Bob T. Li, Gregory J. Riely, Nikolaus Schultz, Aaron Lisman, Gaofei Zhao, Ino de Bruijn, Walid K. Chatila, Xiang Li, Anita Kohli, Darin Moore, Raymond Lim, Tom Pollard, Robert E. Sheridan, Avery Wang, Calla Chennault, Manda Wilson, Hongxin Zhang, Robert Pimienta, Surya Narayana Rangavajhala, Gayathri Subramanian, J.A. Valverde García, Naveen Rachuri, Kevin M. Boehm, Mitchell I. Parker, Henry Walch, Subhiksha Nandakumar, Jordan Eichholz, Ayush Kris, Paolo Manca, Xuechun Bai, Tejiri Agbamu, U Justin, Xiao-Jun Bi

    出版 2024
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  17. 17
    Enhanced clinical assessment of hematologic malignancies through routine paired tumor:normal sequencing

    Enhanced clinical assessment of hematologic malignancies through routine paired tumor:normal sequencing 由 Ryan Ptashkin, Mark D. Ewalt, Gowtham Jayakumaran, Iwona Kiecka, Anita S. Bowman, JinJuan Yao, Jacklyn Casanova, Yun-Te David Lin, Kseniya Petrova‐Drus, Abhinita Mohanty, Ruben Bacares, Jamal Benhamida, Satshil Rana, Anna Razumova, Chad Vanderbilt, Anoop Balakrishnan Rema, Ivelise Rijo, Julie Son-Garcia, Ino de Bruijn, Menglei Zhu, Sean Lachhander, Wei Wang, Mohammad Mahfuzul Haque, Venkatraman Seshan, Jiajing Wang, Ying Liu, Khédoudja Nafa, Laetitia Borsu, Yanming Zhang, Umut Aypar, Sarah P. Suehnholz, Debyani Chakravarty, Jae H. Park, Omar Abdel‐Wahab, Anthony Mato, Wenbin Xiao, Mikhail Roshal, Mariko Yabe, Connie Lee Batlevi, Sergio Giralt, Gilles Salles, Raajit K. Rampal, Martin S. Tallman, Eytan M. Stein, Anas Younes, Ross L. Levine, Miguel‐Angel Perales, Marcel R.M. van den Brink, Ahmet Doǧan, Marc Ladanyi, Michael F. Berger, A. Rose Brannon, Ryma Benayed, Ahmet Zehir, Maria E. Arcila

    出版 2022
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  18. 18
    Enhanced clinical assessment of hematologic malignancies through routine paired tumor and normal sequencing

    Enhanced clinical assessment of hematologic malignancies through routine paired tumor and normal sequencing 由 Ryan Ptashkin, Mark D. Ewalt, Gowtham Jayakumaran, Iwona Kiecka, Anita S. Bowman, JinJuan Yao, Jacklyn Casanova, Yun-Te David Lin, Kseniya Petrova‐Drus, Abhinita Mohanty, Ruben Bacares, Jamal Benhamida, Satshil Rana, Anna Razumova, Chad Vanderbilt, Anoop Balakrishnan Rema, Ivelise Rijo, Julie Son-Garcia, Ino de Bruijn, Menglei Zhu, Sean Lachhander, Wei Wang, Mohammad Shamsul Haque, Venkatraman Seshan, Jiajing Wang, Ying Liu, Khédoudja Nafa, Laetitia Borsu, Yanming Zhang, Umut Aypar, Sarah P. Suehnholz, Debyani Chakravarty, Jae H. Park, Omar Abdel‐Wahab, Anthony R. Mato, Wenbin Xiao, Mikhail Roshal, Mariko Yabe, Connie Lee Batlevi, Sergio Giralt, Gilles Salles, Raajit K. Rampal, Martin S. Tallman, Eytan M. Stein, Anas Younes, Ross L. Levine, Miguel‐Angel Perales, Marcel R.M. van den Brink, Ahmet Doǧan, Marc Ladanyi, Michael F. Berger, A. Rose Brannon, Ryma Benayed, Ahmet Zehir, Maria E. Arcila

    出版 2023
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  19. 19
    Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal

    Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal 由 Ino de Bruijn, Ritika Kundra, Brooke Mastrogiacomo, Thinh Ngoc Tran, Luke Sikina, Tali Mazor, Xiang Li, Angelica Ochoa, Gaofei Zhao, Bryan Lai, Adam Abeshouse, Diana Baiceanu, Ersin Ciftci, Uḡur Doḡrusöz, Andrew Dufilie, Ziya Erkoç, Elena Garcia Lara, Zhaoyuan Fu, Benjamin E. Gross, Charles Haynes, Allison P. Heath, David Higgins, Prasanna Jagannathan, Karthik Kalletla, Priti Kumari, James Lindsay, Aaron Lisman, Bas Leenknegt, Pieter Lukasse, Divya Madela, Ramyasree Madupuri, Pim van Nierop, Oleguer Plantalech, Joyce Quach, Adam Resnick, Sander Y.A. Rodenburg, Baby A. Satravada, Fedde Schaeffer, Robert L. Sheridan, Jessica Singh, Rajat Sirohi, S. Onur Sumer, Sjoerd van Hagen, Avery Wang, Manda Wilson, Hongxin Zhang, Kelsey Zhu, Nicole Rusk, Samantha Brown, Jessica A. Lavery, Katherine S. Panageas, Julia E. Rudolph, Michele L. Lenoue-Newton, Jeremy L. Warner, Xindi Guo, Haley Hunter-Zinck, Thomas Yu, Shirin Pilai, Chelsea Nichols, Stuart M. Gardos, John Philip, Kenneth L. Kehl, Gregory J. Riely, Deborah Schrag, Jocelyn Lee, Michael V. Fiandalo, Shawn M. Sweeney, Trevor J. Pugh, Chris Sander, Ethan Cerami, Jianjiong Gao, Nikolaus Schultz

    出版 2023
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  20. 20
    Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines

    Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines 由 Kyle Ellrott, Matthew H. Bailey, Gordon Saksena, Kyle R. Covington, Cyriac Kandoth, Chip Stewart, Julian M. Hess, Singer Ma, Kami Chiotti, Michael D. McLellan, Heidi J. Sofia, Carolyn Hutter, Gad Getz, David A. Wheeler, Li Ding, Rory Johnson, John A. Demchok, Ina Felau, Melpomeni Kasapi, Martin L. Ferguson, Carolyn M. Hutter, Heidi J. Sofia, Roy Tarnuzzer, Zhining Wang, Liming Yang, Jean C. Zenklusen, Jiashan Zhang, Sudha Chudamani, Jia Liu, Laxmi Lolla, Rashi Naresh, Todd Pihl, Qiang Sun, Yunhu Wan, Ye Wu, Juok Cho, Timothy Defreitas, Scott Frazer, Nils Gehlenborg, Gad Getz, David I. Heiman, Jaegil Kim, Michael S. Lawrence, Pei Lin, Thomas J. Giordano, Michael S. Noble, Gordon Saksena, Doug Voet, Hailei Zhang, Brady Bernard, Nyasha Chambwe, Varsha Dhankani, Theo Knijnenburg, Roger Kramer, Kalle Leinonen, Yuexin Liu, Michael I. Miller, Sheila M. Reynolds, Ilya Shmulevich, Vésteinn Thórsson, Wei Zhang, Rehan Akbani, Bradley M. Broom, Apurva M. Hegde, Zhenlin Ju, Rupa S. Kanchi, Anil Korkut, Jun Li, Han Liang, Shiyun Ling, Wenbin Liu, Yiling Lu, Gordon B. Mills, Kwok-Shing Ng, Arvind Rao, Michaël Ryan, Jing Wang, John N. Weinstein, Jiexin Zhang, Adam Abeshouse, Joshua Armenia, Debyani Chakravarty, Walid K. Chatila, Ino de Bruijn, Galen F. Gao, Benjamin E. Gross, Zachary Heins, Ritika Kundra, Konnor La, Marc Ladanyi, Augustin Luna, Moriah G. Nissan, Angelica Ochoa, Sarah Phillips, Ed Reznik, Francisco Sánchez-Vega, Chris Sander, Nikolaus Schultz, Robert P. Sheridan, S. Onur Sumer

    出版 2018
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