Search Results - I-Min A. Chen

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  1. 1
    IMG ER: A System for Microbial Genome Annotation Expert Review and Curation

    IMG ER: A System for Microbial Genome Annotation Expert Review and Curation by Victor Markowitz, Konstantinos Mavromatis, Natalia Ivanova, I-Min A. Chen, Ken Chu, Nikos C. Kyrpides

    Published 2009
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  2. 2
    The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes

    The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes by Konstantinos Mavromatis, Natalia Ivanova, I-Min A. Chen, Ernest Szeto, Victor Markowitz, Nikos C. Kyrpides

    Published 2009
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  3. 3
    IMG ER: a system for microbial genome annotation expert review and curation

    IMG ER: a system for microbial genome annotation expert review and curation by Victor Markowitz, Konstantinos Mavromatis, Natalia Ivanova, I-Min A. Chen, Ken Chu, Nikos C. Kyrpides

    Published 2009
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  4. 4
    The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata

    The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata by Konstantinos Liolios, I-Min A. Chen, Konstantinos Mavromatis, Nektarios Tavernarakis, Philip Hugenholtz, Victor Markowitz, Nikos C. Kyrpides

    Published 2009
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  5. 5
    Improving Microbial Genome Annotations in an Integrated Database Context

    Improving Microbial Genome Annotations in an Integrated Database Context by I-Min A. Chen, Victor Markowitz, Ken Chu, Iain Anderson, Konstantinos Mavromatis, Nikos C. Kyrpides, Natalia Ivanova

    Published 2013
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  6. 6
    The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata.

    The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata. by Ioanna Pagani, Konstantinos Liolios, Jakob Jansson, I-Min A. Chen, Tatyana I. Smirnova, Bahador Nosrat, Victor Markowitz, Nikos C. Kyrpides

    Published 2012
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  7. 7
    IMG-ABC v.5.0: an update to the IMG/Atlas of Biosynthetic Gene Clusters Knowledgebase

    IMG-ABC v.5.0: an update to the IMG/Atlas of Biosynthetic Gene Clusters Knowledgebase by Krishna Palaniappan, I-Min A. Chen, Ken Chu, Anna Ratner, R. Seshadri, Nikos C. Kyrpides, Natalia Ivanova, Nigel J. Mouncey

    Published 2019
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  8. 8
    IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes

    IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes by Michalis Hadjithomas, I-Min A. Chen, Ken Chu, Jinghua Huang, Anna Ratner, Krishna Palaniappan, Evan Andersen, Victor Markowitz, Nikos C. Kyrpides, Natalia Ivanova

    Published 2016
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  9. 9
    Genomes OnLine database (GOLD) v.7: updates and new features

    Genomes OnLine database (GOLD) v.7: updates and new features by Supratim Mukherjee, Dimitri Stamatis, Jon Bertsch, Galina Ovchinnikova, Hema Y Katta, Alejandro Mojica, I-Min A. Chen, Nikos C. Kyrpides, T. B. K. Reddy

    Published 2018
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  10. 10
    Genomes OnLine Database (GOLD) v.8: overview and updates

    Genomes OnLine Database (GOLD) v.8: overview and updates by Supratim Mukherjee, Dimitri Stamatis, Jon Bertsch, Galina Ovchinnikova, Jagadish Chandrabose Sundaramurthi, Janey Lee, Mahathi Kandimalla, I-Min A. Chen, Nikos C. Kyrpides, T. B. K. Reddy

    Published 2020
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  11. 11
    The integrated microbial genomes system: an expanding comparative analysis resource

    The integrated microbial genomes system: an expanding comparative analysis resource by Victor Markowitz, I-Min A. Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto, Yuri Grechkin, Anna Ratner, Iain Anderson, Athanasios Lykidis, Konstantinos Mavromatis, Natalia Ivanova, Nikos C. Kyrpides

    Published 2009
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  12. 12
    The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)

    The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4) by Marcel Huntemann, Natalia Ivanova, Konstantinos Mavromatis, H. James Tripp, David Páez-Espino, Krishna Palaniappan, Ernest Szeto, Manoj Pillay, I-Min A. Chen, Amrita Pati, Torben Nielsen, Victor Markowitz, Nikos C. Kyrpides

    Published 2015
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  13. 13
    Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system

    Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system by I-Min A. Chen, Victor Markowitz, Krishna Palaniappan, Ernest Szeto, Ken Chu, Jinghua Huang, Anna Ratner, Manoj Pillay, Michalis Hadjithomas, Marcel Huntemann, Natalia Mikhailova, Galina Ovchinnikova, Natalia Ivanova, Nikos C. Kyrpides

    Published 2016
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  14. 14
    Twenty-five years of Genomes OnLine Database (GOLD): data updates and new features in v.9

    Twenty-five years of Genomes OnLine Database (GOLD): data updates and new features in v.9 by Supratim Mukherjee, Dimitri Stamatis, Cindy Tianqing Li, Galina Ovchinnikova, Jon Bertsch, Jagadish Chandrabose Sundaramurthi, Mahathi Kandimalla, Paul A Nicolopoulos, Alessandro Favognano, I-Min A. Chen, Nikos C. Kyrpides, T. B. K. Reddy

    Published 2022
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  15. 15
    The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)

    The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4) by Marcel Huntemann, Natalia Ivanova, Konstantinos Mavromatis, H. James Tripp, David Páez-Espino, Kristin Tennessen, Krishna Palaniappan, Ernest Szeto, Manoj Pillay, I-Min A. Chen, Amrita Pati, Torben Nielsen, Victor Markowitz, Nikos C. Kyrpides

    Published 2016
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  16. 16
    The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities

    The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities by I-Min A. Chen, Ken Chu, Krishna Palaniappan, Anna Ratner, Jinghua Huang, Marcel Huntemann, Patrick Hajek, Stephan Ritter, Neha Varghese, R. Seshadri, Simon Roux, Tanja Woyke, Emiley A. Eloe‐Fadrosh, Natalia Ivanova, Nikos C. Kyrpides

    Published 2020
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  17. 17
    IMG 4 version of the integrated microbial genomes comparative analysis system

    IMG 4 version of the integrated microbial genomes comparative analysis system by Victor Markowitz, I-Min A. Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto, Manoj Pillay, Anna Ratner, Jinghua Huang, Tanja Woyke, Marcel Huntemann, Iain Anderson, Konstantinos Billis, Neha Varghese, Konstantinos Mavromatis, Amrita Pati, Natalia Ivanova, Nikos C. Kyrpides

    Published 2013
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  18. 18
    IMG/M 4 version of the integrated metagenome comparative analysis system

    IMG/M 4 version of the integrated metagenome comparative analysis system by Victor Markowitz, I-Min A. Chen, Ken Chu, Ernest Szeto, Krishna Palaniappan, Manoj Pillay, Anna Ratner, Jinghua Huang, Ioanna Pagani, Susannah G. Tringe, Marcel Huntemann, Konstantinos Billis, Neha Varghese, Kristin Tennessen, Konstantinos Mavromatis, Amrita Pati, Natalia Ivanova, Nikos C. Kyrpides

    Published 2013
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  19. 19
    IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes

    IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes by I-Min A. Chen, Ken Chu, Krishna Palaniappan, Manoj Pillay, Anna Ratner, Jinghua Huang, Marcel Huntemann, Neha Varghese, James R. White, R. Seshadri, Tatyana I. Smirnova, Edward Kirton, Sean P. Jungbluth, Tanja Woyke, Emiley A. Eloe‐Fadrosh, Natalia Ivanova, Nikos C. Kyrpides

    Published 2018
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  20. 20
    DOE JGI Metagenome Workflow

    DOE JGI Metagenome Workflow by Alicia Clum, Marcel Huntemann, Brian Bushnell, Brian Foster, Bryce Foster, Simon Roux, Patrick Hajek, Neha Varghese, Supratim Mukherjee, T. B. K. Reddy, Chris Daum, Yuko Yoshinaga, Ronan C. O’Malley, R. Seshadri, Nikos C. Kyrpides, Emiley A. Eloe‐Fadrosh, I-Min A. Chen, Alex Copeland, Natalia Ivanova

    Published 2021
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