Ohcanbohtosat - Huang, Tim HM

Identifying differentially methylated genes using mixed effect and generalized least square models Dahkki Sun, Shuying, Yan, Pearlly S, Huang, Tim HM, Lin, Shili

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Construction and evaluation of robust interpretation models for breast cancer metastasis prediction Dahkki Adnan, Nahim, Zand, Maryam, Huang, Tim HM, Ruan, Jianhua

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Probe signal correction for differential methylation hybridization experiments Dahkki Potter, Dustin P, Yan, Pearlly, Huang, Tim HM, Lin, Shili

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Comparative evaluation of network features for the prediction of breast cancer metastasis Dahkki Adnan, Nahim, Liu, Zhijie, Huang, Tim H.M., Ruan, Jianhua

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Preprocessing differential methylation hybridization microarray data Dahkki Sun, Shuying, Huang, Yi-Wen, Yan, Pearlly S, Huang, Tim HM, Lin, Shili

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A Poisson mixture model to identify changes in RNA polymerase II binding quantity using high-throughput sequencing technology Dahkki Feng, Weixing, Liu, Yunlong, Wu, Jiejun, Nephew, Kenneth P, Huang, Tim HM, Li, Lang

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Identifying hypermethylated CpG islands using a quantile regression model Dahkki Sun, Shuying, Chen, Zhengyi, Yan, Pearlly S, Huang, Yi-Wen, Huang, Tim HM, Lin, Shili

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Genome-wide analysis of alternative promoters of human genes using a custom promoter tiling array Dahkki Singer, Gregory AC, Wu, Jiejun, Yan, Pearlly, Plass, Christoph, Huang, Tim HM, Davuluri, Ramana V

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A modulator based regulatory network for ERα signaling pathway Dahkki Wu, Heng-Yi, Zheng, Pengyue, Jiang, Guanglong, Liu, Yunlong, Nephew, Kenneth P, Huang, Tim HM, Li, Lang

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QChIPat: a quantitative method to identify distinct binding patterns for two biological ChIP-seq samples in different experimental conditions Dahkki Liu, Bin, Yi, Jimmy, SV, Aishwarya, Lan, Xun, Ma, Yilin, Huang, Tim HM, Leone, Gustavo, Jin, Victor X

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Methylation Linear Discriminant Analysis (MLDA) for identifying differentially methylated CpG islands Dahkki Dai, Wei, Teodoridis, Jens M, Graham, Janet, Zeller, Constanze, Huang, Tim HM, Yan, Pearlly, Vass, J Keith, Brown, Robert, Paul, Jim

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STAT3 can be activated through paracrine signaling in breast epithelial cells Dahkki Lieblein, Jacqueline C, Ball, Sarah, Hutzen, Brian, Sasser, A Kate, Lin, Huey-Jen, Huang, Tim HM, Hall, Brett M, Lin, Jiayuh

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Integrated analysis of DNA methylation and gene expression reveals specific signaling pathways associated with platinum resistance in ovarian cancer Dahkki Li, Meng, Balch, Curt, Montgomery, John S, Jeong, Mikyoung, Chung, Jae Hoon, Yan, Pearlly, Huang, Tim HM, Kim, Sun, Nephew, Kenneth P

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Identification of novel DNA methylation inhibitors via a two-component reporter gene system Dahkki Lin, Yi-Shiuan, Shaw, Arthur Y, Wang, Shi-Gang, Hsu, Chia-Chen, Teng, I-Wen, Tseng, Min-Jen, Huang, Tim HM, Chen, Ching-Shih, Leu, Yu-Wei, Hsiao, Shu-Huei

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Multivalent epigenetic marks confer microenvironment-responsive epigenetic plasticity to ovarian cancer cells Dahkki Bapat, Sharmila A, Jin, Victor, Berry, Nicholas, Balch, Curt, Sharma, Neeti, Kurrey, Nawneet, Zhang, Shu, Fang, Fang, Lan, Xun, Li, Meng, Kennedy, Brian, Bigsby, Robert M, Huang, Tim HM, Nephew, Kenneth P

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A modulated empirical Bayes model for identifying topological and temporal estrogen receptor α regulatory networks in breast cancer Dahkki Shen, Changyu, Huang, Yiwen, Liu, Yunlong, Wang, Guohua, Zhao, Yuming, Wang, Zhiping, Teng, Mingxiang, Wang, Yadong, Flockhart, David A, Skaar, Todd C, Yan, Pearlly, Nephew, Kenneth P, Huang, Tim HM, Li, Lang

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An integrative ChIP-chip and gene expression profiling to model SMAD regulatory modules Dahkki Qin, Huaxia, Chan, Michael WY, Liyanarachchi, Sandya, Balch, Curtis, Potter, Dustin, Souriraj, Irene J, Cheng, Alfred SL, Agosto-Perez, Francisco J, Nikonova, Elena V, Yan, Pearlly S, Lin, Huey-Jen, Nephew, Kenneth P, Saltz, Joel H, Showe, Louise C, Huang, Tim HM, Davuluri, Ramana V

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